RPSBLAST alignment for GI: 254780610 and conserved domain: TIGR00005

>gnl|CDD|161659 TIGR00005, rluA_subfam, pseudouridine synthase, RluA family. modifies uracil-65 in transfer RNAs to pseudouridine. Length = 299

 Score =  315 bits (809), Expect = 1e-86
 Identities = 138/316 (43%), Positives = 191/316 (60%), Gaps = 24/316 (7%)

Query: 24  RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNI 83
           R+D +LA+ L +  SRS ++ LI NG + +NG V+ NP  KV  GD   + VP  ++  +
Sbjct: 7   RLDDFLASLLPD-LSRSRIQKLIENGQVKVNGKVTANPKLKVKDGDRITVRVPEEEEHEV 65

Query: 84  AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPG 143
             ++IPLDIL+ED+DIIVINKP+GLVVHP  GN  GT++NALL HC      I GV+R G
Sbjct: 66  PPQDIPLDILFEDEDIIVINKPSGLVVHPGGGNPFGTVLNALLAHC----PPIAGVERVG 121

Query: 144 IVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAP 203
           IVHRLD+DT+G+MVVAK  LA ++L  Q  +      + + Y A+V G      G ++AP
Sbjct: 122 IVHRLDRDTSGLMVVAKTPLALRELQRQLKNRT----VTKEYVALVHGQFDSGGGTVDAP 177

Query: 204 LGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVH 263
           LGR  +NR   AV          A+TH++ +E    N+    SL++C LETGRTHQIRVH
Sbjct: 178 LGRVPNNRGLMAVH--PSSEGKPAVTHFRVLE-RFGNA----SLVECELETGRTHQIRVH 230

Query: 264 MAHKGNPLIGDPLYG-KGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDF 322
           + + G+PL GDPLYG K           N         RQALHA+ L F HP   + ++F
Sbjct: 231 LQYLGHPLAGDPLYGNKPVPGNNLNGLLN-------FDRQALHAYELGFIHPATGEILEF 283

Query: 323 QVPIPEDMLTVIRKLN 338
           + P+P D++ ++  L 
Sbjct: 284 EAPLPADLVLLLEALR 299