RPSBLAST alignment for GI: 254780610 and conserved domain: PRK11180

>gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional. Length = 325
 Score =  255 bits (654), Expect = 1e-68
 Identities = 128/326 (39%), Positives = 179/326 (54%), Gaps = 26/326 (7%)

Query: 17  SDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76
           S+S    R+D+ LA  L   +SRS +K  IL+  + +NG V   P  KV+ G+   I   
Sbjct: 12  SESQLGQRLDQALA-ELFPDYSRSRIKEWILDQRVLVNGKVINKPKEKVLGGEQVAIDAE 70

Query: 77  AAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSI 136
             ++     ++IPLDI+YEDDDI+VINKP  LVVHP  GN  GT++NALL++       I
Sbjct: 71  IEEEARFEPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY----PPI 126

Query: 137 NGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPD 196
             V R GIVHRLDKDTTG+MVVAK   A  +L    V+  +   + R Y A+  G  +  
Sbjct: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRL----VEALQKREITREYEAVAIGH-MTA 181

Query: 197 SGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGR 256
            G ++ P+ R  + R   AV          A+THY+ +E +        + L+  LETGR
Sbjct: 182 GGTVDEPISRHPTKRTHMAVH----PMGKPAVTHYRIMEHFR-----VHTRLRLRLETGR 232

Query: 257 THQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSL---ARQALHAHSLSFSH 313
           THQIRVHMAH  +PL+GD +YG     +       ++  I +L    RQALHA  L   H
Sbjct: 233 THQIRVHMAHITHPLVGDQVYGG----RPRPPKGASEEFISTLRKFDRQALHATMLRLYH 288

Query: 314 PRNNQDMDFQVPIPEDMLTVIRKLNE 339
           P    +M++  P+P+DM+ +I  L  
Sbjct: 289 PITGIEMEWHAPLPQDMVELIEALRA 314