RPSBLAST alignment for GI: 254780610 and conserved domain: cd02557
>gnl|CDD|73313 cd02557, PseudoU_synth_ScRIB2, PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.. Length = 213
Score = 119 bits (301), Expect = 8e-28
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 87 NIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVH 146
N P+ I++EDDD++V++KP+G+ VHP G + V +L L+ + RP H
Sbjct: 13 NDPIKIVHEDDDLLVVDKPSGIPVHPT-GRYRYNTVTEILKS-EYGLTEL----RP--CH 64
Query: 147 RLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGR 206
RLD+ T+G+++ AK +L +Q +K+ Y A V G +++ P+G
Sbjct: 65 RLDRLTSGLLLFAKTSQTASRLQQQIRSR----EVKKEYLARVKGEFPDGEVVVDQPIG- 119
Query: 207 CKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAH 266
+ ++ D+ A T ++ + YN + N S++ C TGRTHQIRVH+ +
Sbjct: 120 --LVSPKGGLRNDVDEKGKDARTIFKRL-SYNGDLNT--SVVLCKPITGRTHQIRVHLQY 174
Query: 267 KGNPLIGDPLYG 278
G+P++ DP+Y
Sbjct: 175 LGHPIVNDPIYN 186