RPSBLAST alignment of GI: 254780610 and MMDB domain: 1v9f_A_

>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli}Length = 325

 Score =  164 bits (416), Expect = 1e-41
 Identities = 114/330 (34%), Positives = 159/330 (48%), Gaps = 21/330 (6%)

Query: 9   SSIKISLLSDSTAEG-RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVP 67
             ++++        G R+D+ LA    + +SRS +K  IL+  + +NG V   P  KV+ 
Sbjct: 2   QRVQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 60

Query: 68  GDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLY 127
           G+   I     ++     ++IPLDI+YED+DII+INKP  LVVHP  GN  GT++NALL+
Sbjct: 61  GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 120

Query: 128 HCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYA 187
           +       I  V R GIVHRLDKDTTG+MVVAK   A  +L E            R Y A
Sbjct: 121 YYPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI----TREYEA 172

Query: 188 MVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSL 247
           +  G       +                                              + 
Sbjct: 173 VAIGHMTAGGTVDEPISRHPTKRTHMAVHPM----------GKPAVTHYRIMEHFRVHTR 222

Query: 248 LKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAH 307
           L+  LETGRTHQIRVHMAH  +PL+GDP+YG   +      +    S +    RQALHA 
Sbjct: 223 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHAT 281

Query: 308 SLSFSHPRNNQDMDFQVPIPEDMLTVIRKL 337
            L   HP +  +M++  PIP+DM+ +I  +
Sbjct: 282 MLRLYHPISGIEMEWHAPIPQDMVELIEVM 311