RPSBLAST alignment of GI: 254780610 and protein with PDBid: 1v9f

>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325
 Score =  192 bits (489), Expect = 7e-50
 Identities = 120/328 (36%), Positives = 172/328 (52%), Gaps = 21/328 (6%)

Query: 11  IKISLLSDSTAEG-RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD 69
           ++++        G R+D+ LA    + +SRS +K  IL+  + +NG V   P  KV+ G+
Sbjct: 4   VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 62

Query: 70  SFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHC 129
              I     ++     ++IPLDI+YED+DII+INKP  LVVHP  GN  GT++N      
Sbjct: 63  QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN----AL 118

Query: 130 HNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMV 189
            +    I  V R GIVHRLDKDTTG+MVVAK   A  +L E               Y  V
Sbjct: 119 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE-----ITREYEAV 173

Query: 190 WGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLK 249
               +   G ++ P+ R  + R   AV          A+THY+ +E +  +     + L+
Sbjct: 174 AIGHMTAGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-----TRLR 224

Query: 250 CHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSL 309
             LETGRTHQIRVHMAH  +PL+GDP+YG   +      +    S +    RQALHA  L
Sbjct: 225 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATML 283

Query: 310 SFSHPRNNQDMDFQVPIPEDMLTVIRKL 337
              HP +  +M++  PIP+DM+ +I  +
Sbjct: 284 RLYHPISGIEMEWHAPIPQDMVELIEVM 311