RPSBLAST alignment of GI: 254780610 and protein with PDBid: 1v9f
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325
Score = 192 bits (489), Expect = 7e-50
Identities = 120/328 (36%), Positives = 172/328 (52%), Gaps = 21/328 (6%)
Query: 11 IKISLLSDSTAEG-RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGD 69
++++ G R+D+ LA + +SRS +K IL+ + +NG V P KV+ G+
Sbjct: 4 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 62
Query: 70 SFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHC 129
I ++ ++IPLDI+YED+DII+INKP LVVHP GN GT++N
Sbjct: 63 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN----AL 118
Query: 130 HNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMV 189
+ I V R GIVHRLDKDTTG+MVVAK A +L E Y V
Sbjct: 119 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE-----ITREYEAV 173
Query: 190 WGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLK 249
+ G ++ P+ R + R AV A+THY+ +E + + + L+
Sbjct: 174 AIGHMTAGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-----TRLR 224
Query: 250 CHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSL 309
LETGRTHQIRVHMAH +PL+GDP+YG + + S + RQALHA L
Sbjct: 225 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATML 283
Query: 310 SFSHPRNNQDMDFQVPIPEDMLTVIRKL 337
HP + +M++ PIP+DM+ +I +
Sbjct: 284 RLYHPISGIEMEWHAPIPQDMVELIEVM 311