RPSBLAST alignment of GI: 254780610 and protein with PDBid: 1v9k
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A Length = 228
Score = 162 bits (410), Expect = 1e-40
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 25/246 (10%)
Query: 92 ILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKD 151
I+YEDD I+V+NKP+G VH G G + + +VHRLD+D
Sbjct: 4 IMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA--------RFLELVHRLDRD 55
Query: 152 TTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNR 211
T+GV++VAK A + L EQ + G ++ Y A+V G + APL +
Sbjct: 56 TSGVLLVAKKRSALRSLHEQLREKGM----QKDYLALVRGQWQSHVKSVQAPLLKNILQS 111
Query: 212 LRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPL 271
R V+ + + T ++ E Y +L++C TGRTHQIRVH + G+P+
Sbjct: 112 GERIVR--VSQEGKPSETRFKVEERYAFA-----TLVRCSPVTGRTHQIRVHTQYAGHPI 164
Query: 272 IGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDML 331
D YG + A L R LHA +L F+HP + M + P+ E +
Sbjct: 165 AFDDRYGDREFDR------QLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 218
Query: 332 TVIRKL 337
++K+
Sbjct: 219 RCLQKM 224