HHsearch alignment for GI: 254780611 and conserved domain: PRK00118
>PRK00118 putative DNA-binding protein; Validated.
Probab=97.74 E-value=0.00011 Score=50.85 Aligned_cols=54 Identities=28% Similarity=0.360 Sum_probs=46.0
Q ss_pred HHHHH-HCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99996-219999999999982788888989999997789999999999999999999
Q gi|254780611|r 228 LTRSM-SVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283 (302)
Q Consensus 228 L~~~l-~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~ 283 (302)
T Consensus 10 L~D~Yg~LLT~kQ~~~~~lyy~~D--lSl~EIAe~~~iSRQaV~D~ikr~~~~L~~y 64 (105)
T PRK00118 10 LFDFYQSLLTEKQRNYMELYYLDD--YSLGEIAEEFNVSRQAVYDNIKRTEKLLEDY 64 (105)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999989875599999999998854--9999998996985999999999999999999