HHsearch alignment for GI: 254780611 and conserved domain: PRK05572
>PRK05572 sporulation sigma factor SigF; Validated.
Probab=100.00 E-value=0 Score=450.28 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=209.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 84079999989999999999982859999999994307787565555799998889999998889989862185345689
Q gi|254780611|r 22 EIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRL 101 (302)
Q Consensus 22 ~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~F 101 (302)
T Consensus 5 ~~~~~~~Ls~eee~~L~~~~~-~Gd~~Ar~~Li~~nlrLV~siA~ry~~~g~~~~DLiQeG~iGLi~A~ekFDp~~G~rF 83 (251)
T PRK05572 5 NEVKKEQLKDEENKELIKKAQ-DGDKEARDKLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKFDLSYDVKF 83 (251)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 124689999999999999998-0799999999998599999999877589999889999999999999622598989840
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99757789999998532024600110230035899999999788786624478882467788861898321100000012
Q gi|254780611|r 102 ATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLA 181 (302)
Q Consensus 102 sTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~ 181 (302)
T Consensus 84 sTYA~~wIr~~I~~~ir~~~-~irvp~~~~-----~~~~ki~~~~~~l~~~~~r~ps~~eia~~lg~~~~~v~~~~~~~~ 157 (251)
T PRK05572 84 STYAVPMIIGEIQRFLRDDG-IIKVSRSLK-----ELANKIRKDKEELSKELGRAPTIEELAEYLGVTPEEVVLAQEASR 157 (251)
T ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 22009999999999998578-766868899-----999889999999999878899899999997939999999998817
Q ss_pred CCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 23433552023234532000001235687056556666666777999999621999999999998278888898999999
Q gi|254780611|r 182 GDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSE 261 (302)
Q Consensus 182 ~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~ 261 (302)
T Consensus 158 ~~~sl~~~~~~~d~~~~~l~d~~~~~~--~~~~~-------~~~~~L~~~l~~L~~rEr~Vi~~ry~~~--~tl~EIa~~ 226 (251)
T PRK05572 158 SPQSIHETVHENDGDPITLLDQIADQS--EEDDW-------FDKIALKEAIRELDERERLIIYLRYFKD--KTQSEVAKR 226 (251)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCC--HHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCHHHHHHH
T ss_conf 987534666678997156654126873--46899-------9999999999728999999999981789--889999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789999999999999999999997
Q gi|254780611|r 262 FEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 262 lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 227 lgiS~eRVrQI~~~Al~kLR~~L~e 251 (251)
T PRK05572 227 LGISQVQVSRLEKKILKQMKEKLDE 251 (251)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7979999999999999999998529