HHsearch alignment for GI: 254780611 and conserved domain: PRK07037
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated.
Probab=99.41 E-value=3.2e-11 Score=94.56 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 85999999999430778756555579999888999999888998986218534568999757789999998532024600
Q gi|254780611|r 45 GDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLV 124 (302)
Q Consensus 45 gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~I 124 (302)
T Consensus 9 ~~e~al~elf~~~~~~L~~~a~r~~~~~~~AEDivQe~Flkl~~~~~~~~~~~--~~-awL~~iarN~~id~lRr~~--- 82 (183)
T PRK07037 9 ACDGALLDVFVDNRSMLVKIARGIVGCASRAEDVVQDAFVKLVEAPNQDAVKQ--PV-AYLFQMVRNLAIDHCRRQS--- 82 (183)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCC--HH-HHHHHHHHHHHHHHHHHHH---
T ss_conf 60899999999999999999999979998899999999999997454344136--99-9999999999999999777---
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCC
Q ss_conf 11023003589999999978878662447888246778886189832110000001223433552023234532000001
Q gi|254780611|r 125 KIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWL 204 (302)
Q Consensus 125 RiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l 204 (302)
T Consensus 83 -------------------~~~~-----~~~-----------------------------~--------~~~~~----~~ 97 (183)
T PRK07037 83 -------------------LENK-----YHG-----------------------------D--------EDDGL----DV 97 (183)
T ss_pred -------------------HHHH-----CCC-----------------------------C--------HHHHC----CC
T ss_conf -------------------6650-----134-----------------------------2--------44421----26
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 23568705655666666677799999962199999999999827888889899999977899999999999999999999
Q gi|254780611|r 205 VYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESI 284 (302)
Q Consensus 205 ~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l 284 (302)
T Consensus 98 ~~~~~~pe~~~~~~e----~~~~l~~ai~~LP~~~R~v~~L~~~eg--~s~~EIAe~LgiS~~tVk~~l~rAl~~LR~~L 171 (183)
T PRK07037 98 PSPEASPEAALINRD----TLRHVADALDELPARTRAAFEMVRLRG--ETLQDIARELNVSQTLVNFMIRDALRHCRKCL 171 (183)
T ss_pred CCCCCCHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 788999899999999----999999999819999999989898739--89999999989299999999999999999999
Q ss_pred HHH
Q ss_conf 974
Q gi|254780611|r 285 QKQ 287 (302)
Q Consensus 285 ~~~ 287 (302)
T Consensus 172 e~~ 174 (183)
T PRK07037 172 DAC 174 (183)
T ss_pred HHH
T ss_conf 876