HHsearch alignment for GI: 254780611 and conserved domain: PRK07500
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed.
Probab=100.00 E-value=0 Score=526.68 Aligned_cols=278 Identities=41% Similarity=0.677 Sum_probs=257.6
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74059999998407999998999999999998285999999999430778756555579999888999999888998986
Q gi|254780611|r 12 GEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVK 91 (302)
Q Consensus 12 ~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~ 91 (302)
T Consensus 4 ~~~~~~~y~~~~~~~plLt~eeE~~L~~~~~~~gD~~Ar~~LI~~NLRLV~~iA~ry~~~g~~l~DLIQeG~iGLi~Ave 83 (289)
T PRK07500 4 DASADRSMIRSAMKAPYLEREEEHALAYRWKDTRDEDALHRIISAHMRLVISMAGKFRRFGLPMNDLIQEGYVGLLEAAA 83 (289)
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 53468999999633799999999999999987779999999999858999999987458998978999986999999997
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 21853456899975778999999853202460011023003589999999978878662447888246778886189832
Q gi|254780611|r 92 KFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSES 171 (302)
Q Consensus 92 kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~ 171 (302)
T Consensus 84 kFDp~rG~rFSTYA~wWIr~aI~r~i~~~~~~iR~p~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~eiA~~l~~~~~ 163 (289)
T PRK07500 84 RFDPDRDVRFSTYATWWIRASIQDYILRNWSIVRGGTSSAQKALFFNLRRLRARLAQSDEQLTKHEIHREIATALGVSLS 163 (289)
T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHH
T ss_conf 36988899721101999999998877736651000038878999999999999999861545655439999988099999
Q ss_pred CCCCCCCCCC-CCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 1100000012-234335520232345320000012356870565566666667779999996219999999999982788
Q gi|254780611|r 172 EVISMNCRLA-GDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQE 250 (302)
Q Consensus 172 ~v~~l~~~~~-~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~ 250 (302)
T Consensus 164 ~v~~~~~~~~~~~~SL~~~~~~d~~~~~~~~d~l~d~~~~p~~~~e~~~~~~~~~~~L~~~l~~L~eREr~Ii~~r~~~~ 243 (289)
T PRK07500 164 DVEMMDARLSGPDSSLNAPQSEEDEGRSERMDFLVDDSPLPDEIVESSIDGERRRQWLTQALQTLNERELFIIRERRLRE 243 (289)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 99999999737986666806787777401555404688983899999999999999999998549999999999976689
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 888989999997789999999999999999999997401
Q gi|254780611|r 251 NPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE 289 (302)
Q Consensus 251 ~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~~~ 289 (302)
T Consensus 244 e~~TL~EIg~~lgvSreRVRQIe~kAL~KLR~~L~~~~~ 282 (289)
T PRK07500 244 DGATLEALGEELGISKERVRQIEARALEKLRRALLSQSP 282 (289)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 985899999997979999999999999999999998477