HHsearch alignment for GI: 254780611 and conserved domain: PRK07598
>PRK07598 RNA polymerase sigma factor SigC; Validated.
Probab=100.00 E-value=0 Score=507.48 Aligned_cols=269 Identities=28% Similarity=0.495 Sum_probs=234.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------------------------------
Q ss_conf 7455874059999998407999998999999999998-------------------------------------------
Q gi|254780611|r 7 SIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYRE------------------------------------------- 43 (302)
Q Consensus 7 ~~~~~~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~------------------------------------------- 43 (302)
T Consensus 48 ~~~~~s~D~vr~YL~eIgrvpLLt~eeEv~la~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 127 (410)
T PRK07598 48 SRNRRSTDLVRLYLQEIGRVPLLGRDEEVSEAQKVQRYMKLVVLANAAKEGDEVIKPYLRLIEVRDRLTAELGHRPSLER 127 (410)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 77999997199999982877789858999999999999999999876520220245667788899999987356851788
Q ss_pred --------------------------------------HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf --------------------------------------285999999999430778756555579999888999999888
Q gi|254780611|r 44 --------------------------------------HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIG 85 (302)
Q Consensus 44 --------------------------------------~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iG 85 (302)
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~G~~Ar~kLI~aNLRLVVsIAkkY~~rGl~l~DLIQEGniG 207 (410)
T PRK07598 128 WAAIADISLADLKPTLAEGKRRWAEIAKLTVEELEQIQKQGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG 207 (410)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87740331234556655445556664014699999999999999999999989999999986578998989999874899
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99898621853456899975778999999853202460011023003589999999978878662447888246778886
Q gi|254780611|r 86 LMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKK 165 (302)
Q Consensus 86 Li~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~ 165 (302)
T Consensus 208 LirAVEKFDp~rG~RFSTYA~WWIRQaI~RaI~~~~r~IRlP~h~~e-----~l~ki~r~~r~L~q~lGR~Pt~eEIA~~ 282 (410)
T PRK07598 208 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITE-----KLNKIKKAQRKISQEKGRTPTIEDIAQE 282 (410)
T ss_pred HHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCEECCCCHHHH-----HHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999970965597257621899999999999980880204602999-----9999999999999875999979999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 18983211000000122343355202323453200000123568705655666666677799999962199999999999
Q gi|254780611|r 166 LNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEA 245 (302)
Q Consensus 166 Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ 245 (302)
T Consensus 283 lg~s~e~V~~~l~~~~~~vSLd~pvg~--d~d~~l~dll~~~~~~pee~~~----~~~l~~~L~~lL~~L~~REr~IL~l 356 (410)
T PRK07598 283 LEMTPTQVREVLLRVPRSVSLETKVGK--DKDTELGDLLETDDVSPEEMLM----RESLQRDLQQLLADLTSRERDVIRM 356 (410)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHHCCCCCCHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 099999999999872788553678888--8864188874458999899999----9999999999983699999999999
Q ss_pred HHCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8278--8888989999997789999999999999999999997
Q gi|254780611|r 246 RRLQ--ENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 246 ry~~--~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 357 RfGL~dg~~~TL~EIG~~lgISRERVRQIE~kAL~KLR~p~r~ 399 (410)
T PRK07598 357 RFGLADGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRR 399 (410)
T ss_pred HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6489997966899999897969999999999999996773778