HHsearch alignment for GI: 254780611 and conserved domain: PRK07598

>PRK07598 RNA polymerase sigma factor SigC; Validated.
Probab=100.00  E-value=0  Score=507.48  Aligned_cols=269  Identities=28%  Similarity=0.495  Sum_probs=234.5

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------------------------------
Q ss_conf             7455874059999998407999998999999999998-------------------------------------------
Q gi|254780611|r    7 SIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYRE-------------------------------------------   43 (302)
Q Consensus         7 ~~~~~~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~-------------------------------------------   43 (302)
T Consensus        48 ~~~~~s~D~vr~YL~eIgrvpLLt~eeEv~la~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  127 (410)
T PRK07598         48 SRNRRSTDLVRLYLQEIGRVPLLGRDEEVSEAQKVQRYMKLVVLANAAKEGDEVIKPYLRLIEVRDRLTAELGHRPSLER  127 (410)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             77999997199999982877789858999999999999999999876520220245667788899999987356851788


Q ss_pred             --------------------------------------HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             --------------------------------------285999999999430778756555579999888999999888
Q gi|254780611|r   44 --------------------------------------HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIG   85 (302)
Q Consensus        44 --------------------------------------~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iG   85 (302)
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~G~~Ar~kLI~aNLRLVVsIAkkY~~rGl~l~DLIQEGniG  207 (410)
T PRK07598        128 WAAIADISLADLKPTLAEGKRRWAEIAKLTVEELEQIQKQGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG  207 (410)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             87740331234556655445556664014699999999999999999999989999999986578998989999874899


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             99898621853456899975778999999853202460011023003589999999978878662447888246778886
Q gi|254780611|r   86 LMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKK  165 (302)
Q Consensus        86 Li~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~  165 (302)
T Consensus       208 LirAVEKFDp~rG~RFSTYA~WWIRQaI~RaI~~~~r~IRlP~h~~e-----~l~ki~r~~r~L~q~lGR~Pt~eEIA~~  282 (410)
T PRK07598        208 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITE-----KLNKIKKAQRKISQEKGRTPTIEDIAQE  282 (410)
T ss_pred             HHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCEECCCCHHHH-----HHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             99999970965597257621899999999999980880204602999-----9999999999999875999979999988


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             18983211000000122343355202323453200000123568705655666666677799999962199999999999
Q gi|254780611|r  166 LNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEA  245 (302)
Q Consensus       166 Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~  245 (302)
T Consensus       283 lg~s~e~V~~~l~~~~~~vSLd~pvg~--d~d~~l~dll~~~~~~pee~~~----~~~l~~~L~~lL~~L~~REr~IL~l  356 (410)
T PRK07598        283 LEMTPTQVREVLLRVPRSVSLETKVGK--DKDTELGDLLETDDVSPEEMLM----RESLQRDLQQLLADLTSRERDVIRM  356 (410)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHHCCCCCCHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             099999999999872788553678888--8864188874458999899999----9999999999983699999999999


Q ss_pred             HHCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8278--8888989999997789999999999999999999997
Q gi|254780611|r  246 RRLQ--ENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK  286 (302)
Q Consensus       246 ry~~--~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~  286 (302)
T Consensus       357 RfGL~dg~~~TL~EIG~~lgISRERVRQIE~kAL~KLR~p~r~  399 (410)
T PRK07598        357 RFGLADGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRR  399 (410)
T ss_pred             HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             6489997966899999897969999999999999996773778