HHsearch alignment for GI: 254780611 and conserved domain: PRK07921
>PRK07921 RNA polymerase sigma factor SigB; Reviewed.
Probab=100.00 E-value=0 Score=520.72 Aligned_cols=272 Identities=24% Similarity=0.402 Sum_probs=238.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHH
Q ss_conf 655745587405999999840799999899999999999828---------------------------59999999994
Q gi|254780611|r 4 KNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHG---------------------------DLSAAHRLVTS 56 (302)
Q Consensus 4 ~~~~~~~~~~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~g---------------------------d~~Ar~~Li~~ 56 (302)
T Consensus 12 ~~~~~~~p~~D~~~~Yl~ei~~~~lLt~eeE~~La~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~A~~~lI~a 90 (320)
T PRK07921 12 SDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEA-GLYAEHLLETRKRLGEARKRDLAAVVRDGEAARRHLLEA 90 (320)
T ss_pred HCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4489999898819999997188789899999999999997-377898875111001677889998776069999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHH
Q ss_conf 30778756555579999888999999888998986218534568999757789999998532024600110230035899
Q gi|254780611|r 57 HLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLF 136 (302)
Q Consensus 57 nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~ 136 (302)
T Consensus 91 NLRLVvsIAk~Y~~~Gl~~~DLIQEGniGLirAvekFDp~rG~rFSTYA~wWIRq~I~r~i~~~~r~IRlP~~~~~---- 166 (320)
T PRK07921 91 NLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE---- 166 (320)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH----
T ss_conf 1899999998565899998999998389999888516899998128777999999999999970862147188999----
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHH
Q ss_conf 99999978878662447888246778886189832110000001223433552023234532000001235687056556
Q gi|254780611|r 137 FNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLI 216 (302)
Q Consensus 137 ~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~~~~~~~ 216 (302)
T Consensus 167 -~~~ki~~~~~~l~~~lGR~Pt~eEIA~~lgi~~~~v~~~l~~~~~~~SLD~~vg~--d~~~~l~d~i~D~~~~~~e~~- 242 (320)
T PRK07921 167 -QVNKLARIKREMHQHLGREATDEELAEESGIPEEKINDLLEHSRDPVSLDMPVGS--DEEAPLGDFIEDAEAMSAENA- 242 (320)
T ss_pred -HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCHHHHHHCCCCCCHHHH-
T ss_conf -9999999999999983899989999988199999999999972888366776688--875303324405678998999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6666667779999996219999999999982788--888989999997789999999999999999999997
Q gi|254780611|r 217 EKEERKNRRNMLTRSMSVLNPRERRIFEARRLQE--NPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 217 e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~--~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 243 --~~~~~l~~~L~~~L~~L~eREr~IL~~RfGl~~~~~~TL~EIg~~lgvSrERVRQIE~~AL~KLR~~~~~ 312 (320)
T PRK07921 243 --VIAELLHTDIRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRHGERA 312 (320)
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf --9999999999999975999999999997489998974799999897969999999999999997072888