HHsearch alignment for GI: 254780611 and conserved domain: PRK08241
>PRK08241 RNA polymerase factor sigma-70; Validated.
Probab=99.13 E-value=5.6e-09 Score=79.53 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=120.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999828599999999943077875655557999988899999988899898621853456899975778999999
Q gi|254780611|r 35 YVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQ 114 (302)
Q Consensus 35 ~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~ 114 (302)
T Consensus 10 ~~~~a~a~-~GD~~Af~~Lv~~~r~~L~~~cyRmlGs~~dAED~vQEt~lrawr~~~~f~~~--~~~rtWL~rIatn~cL 86 (341)
T PRK08241 10 VAGLAAAA-DGDRDAFLALAEPHRRELLAHCYRMLGSLHDAEDLVQETLLRAWRSYDRFEGR--SSLRTWLYRIATNVCL 86 (341)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEHHHHHHHHH
T ss_conf 99999997-47999999999999999999999980999899999999999998513222655--6641310198999999
Q ss_pred HHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 85320246001102300358999999997887866244788824677888618983211000000122343355202323
Q gi|254780611|r 115 EYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSD 194 (302)
Q Consensus 115 ~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d 194 (302)
T Consensus 87 d~Lr~r~R---------------------R~--~~~~-l~-~~~------------~~------------~~~~~-~--~ 114 (341)
T PRK08241 87 DALEGRAR---------------------RP--LPTG-LG-PPS------------AD------------PSAAL-V--E 114 (341)
T ss_pred HHHHHHHC---------------------CC--CCCC-CC-CCC------------CC------------CCCCC-C--C
T ss_conf 99987424---------------------46--7444-56-665------------66------------54455-5--5
Q ss_pred CCCCCHHC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 45320000-----0123568705655666666677799999962199999999999827888889899999977899999
Q gi|254780611|r 195 KNSSQWQD-----WLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERV 269 (302)
Q Consensus 195 ~~~~~~~d-----~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRV 269 (302)
T Consensus 115 ~~~~~WleP~Pd~~~~~~~~dP~~~~~~r---Esv~lA~laaLq~Lpp~QRavlvLRdV~g--~s~~EiAe~Lg~S~aAV 189 (341)
T PRK08241 115 RPEVPWLEPLPDALLDPAAADPAAIVVAR---ESVRLAFVAALQHLPPRQRAVLLLRDVLG--WSAAEVAEALGTSTAAV 189 (341)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHCCHHHHEEEEHHHHCC--CCHHHHHHHHCCCHHHH
T ss_conf 55666546677534566779988998887---78999999999839997902001297529--98899999978999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780611|r 270 RQIEARAFKKVQESIQ 285 (302)
Q Consensus 270 rQI~~~AL~kLR~~l~ 285 (302)
T Consensus 190 ks~L~RARa~L~~~~p 205 (341)
T PRK08241 190 NSALQRARATLAERRP 205 (341)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999986477