HHsearch alignment for GI: 254780611 and conserved domain: PRK08295

>PRK08295 RNA polymerase factor sigma-70; Validated.
Probab=99.97  E-value=3.5e-28  Score=207.92  Aligned_cols=201  Identities=19%  Similarity=0.265  Sum_probs=152.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             99999899999999999828599999999943077875655557999988899999988899898621853456899975
Q gi|254780611|r   26 IPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYS  105 (302)
Q Consensus        26 ~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA  105 (302)
T Consensus         4 ~~-~~~~~d~~Li~~~~-~GD~~Af~~L~~~y~~~v~~~~~~~~~~~~d~EDlvQe~~i~l~kai~~f~~~k~~~F~t~~   81 (209)
T PRK08295          4 YN-LRDKEDEELVELAQ-SGDTEALEYLIEKYKNFVRAKARSYFLIGAEREDIVQEGMIGLYKAIRDYDEDKLSSFKSFA   81 (209)
T ss_pred             CC-CCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             89-87201999999999-16799999999998999999999982898779999999999999999856865487289999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77899999985320246001102300358999999997887866244788824677888618983211000000122343
Q gi|254780611|r  106 MWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDES  185 (302)
Q Consensus       106 ~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~S  185 (302)
T Consensus        82 ~~~i~~~i~~~ir~~~r~k~~~----------------------------------------------------~~~~~s  109 (209)
T PRK08295         82 ELCITRQIITAIKTANRQKHIP----------------------------------------------------LNSYVS  109 (209)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC----------------------------------------------------CCHHHC
T ss_conf             9999999999999983304545----------------------------------------------------202414


Q ss_pred             HHHHCCCCCCCCCCHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf             35520232345320000012356-87056556666666777999999621999999999998278888898999999778
Q gi|254780611|r  186 LNALINSSDKNSSQWQDWLVYDH-DGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEV  264 (302)
Q Consensus       186 Ld~~i~~~d~~~~~~~d~l~~~~-~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgi  264 (302)
T Consensus       110 ld~~~~~~~-~~~~~~~~~~~~~~~~pe~~~~~~e~~---~~i~~~i~~~l~~~e~~V~~~~-~--eg~s~~EIA~~l~i  182 (209)
T PRK08295        110 LDKPIYDEE-SDRTLLDVISGAKVTDPEELIISKEEL---EIIEEKILELLSDLEKEVLELY-L--DGKSYQEIAEELNR  182 (209)
T ss_pred             CCCCCCCCC-CHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHH-H--CCCCHHHHHHHHCC
T ss_conf             566645554-203565430467789999999999999---9999999846918999999999-8--69999999999892


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999974
Q gi|254780611|r  265 SRERVRQIEARAFKKVQESIQKQ  287 (302)
Q Consensus       265 S~eRVrQI~~~AL~kLR~~l~~~  287 (302)
T Consensus       183 s~~tV~~~l~RarkkLr~~L~~~  205 (209)
T PRK08295        183 HVKSIDNALQRVKRKLEKYLEIR  205 (209)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999998744