HHsearch alignment for GI: 254780611 and conserved domain: PRK08295
>PRK08295 RNA polymerase factor sigma-70; Validated.
Probab=99.97 E-value=3.5e-28 Score=207.92 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=152.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999899999999999828599999999943077875655557999988899999988899898621853456899975
Q gi|254780611|r 26 IPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYS 105 (302)
Q Consensus 26 ~~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA 105 (302)
T Consensus 4 ~~-~~~~~d~~Li~~~~-~GD~~Af~~L~~~y~~~v~~~~~~~~~~~~d~EDlvQe~~i~l~kai~~f~~~k~~~F~t~~ 81 (209)
T PRK08295 4 YN-LRDKEDEELVELAQ-SGDTEALEYLIEKYKNFVRAKARSYFLIGAEREDIVQEGMIGLYKAIRDYDEDKLSSFKSFA 81 (209)
T ss_pred CC-CCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89-87201999999999-16799999999998999999999982898779999999999999999856865487289999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77899999985320246001102300358999999997887866244788824677888618983211000000122343
Q gi|254780611|r 106 MWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDES 185 (302)
Q Consensus 106 ~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~S 185 (302)
T Consensus 82 ~~~i~~~i~~~ir~~~r~k~~~----------------------------------------------------~~~~~s 109 (209)
T PRK08295 82 ELCITRQIITAIKTANRQKHIP----------------------------------------------------LNSYVS 109 (209)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC----------------------------------------------------CCHHHC
T ss_conf 9999999999999983304545----------------------------------------------------202414
Q ss_pred HHHHCCCCCCCCCCHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 35520232345320000012356-87056556666666777999999621999999999998278888898999999778
Q gi|254780611|r 186 LNALINSSDKNSSQWQDWLVYDH-DGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEV 264 (302)
Q Consensus 186 Ld~~i~~~d~~~~~~~d~l~~~~-~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgi 264 (302)
T Consensus 110 ld~~~~~~~-~~~~~~~~~~~~~~~~pe~~~~~~e~~---~~i~~~i~~~l~~~e~~V~~~~-~--eg~s~~EIA~~l~i 182 (209)
T PRK08295 110 LDKPIYDEE-SDRTLLDVISGAKVTDPEELIISKEEL---EIIEEKILELLSDLEKEVLELY-L--DGKSYQEIAEELNR 182 (209)
T ss_pred CCCCCCCCC-CHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHH-H--CCCCHHHHHHHHCC
T ss_conf 566645554-203565430467789999999999999---9999999846918999999999-8--69999999999892
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999974
Q gi|254780611|r 265 SRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 265 S~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 183 s~~tV~~~l~RarkkLr~~L~~~ 205 (209)
T PRK08295 183 HVKSIDNALQRVKRKLEKYLEIR 205 (209)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998744