HHsearch alignment for GI: 254780611 and conserved domain: PRK08301
>PRK08301 sporulation sigma factor SigE; Reviewed.
Probab=100.00 E-value=0 Score=397.79 Aligned_cols=206 Identities=30% Similarity=0.449 Sum_probs=160.6
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99984079-99998999999999998285999999999430778756555579999888999999888998986218534
Q gi|254780611|r 19 YIHEIRKI-PMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPER 97 (302)
Q Consensus 19 yl~~i~~~-~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~k 97 (302)
T Consensus 28 ~~~~~~~~pp~Ls~eeE~~l~~~~~-~GD~~Ar~~LI~~NLRLVv~IAkky~~~G~~l~DLIqEGniGLikAvekFDp~k 106 (239)
T PRK08301 28 YIGGSEALPPPLSKEEEEVLLNKLP-KGDEAVRSILIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106 (239)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7478987999989999999999998-346999999999878999999975768997989999985899999999649888
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 56899975778999999853202460011023003589999999978878662447888246778886189832110000
Q gi|254780611|r 98 GFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMN 177 (302)
Q Consensus 98 G~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~ 177 (302)
T Consensus 107 G~rFSTYA~~~I~~eI~~~lr~~~~~-r~e-------------------------------------------------- 135 (239)
T PRK08301 107 KIKLATYASRCIENEILMYLRRNNKV-RSE-------------------------------------------------- 135 (239)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HCC--------------------------------------------------
T ss_conf 99716301999999999999970424-224--------------------------------------------------
Q ss_pred CCCCCCCCHHHHCCC-CCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCCCC
Q ss_conf 001223433552023-234532000001235687056556666666777999999621999999999998278--88889
Q gi|254780611|r 178 CRLAGDESLNALINS-SDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQ--ENPVT 254 (302)
Q Consensus 178 ~~~~~~~SLd~~i~~-~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~--~~~~T 254 (302)
T Consensus 136 ------vsl~epl~~d~d~~e~~l~D~l~~d~d~~~~----~~e~~~~~~~L~~al~~L~eREr~Ii~lRfGL~~~~~~T 205 (239)
T PRK08301 136 ------VSFDEPLNIDWDGNELLLSDVLGTDNDIIYK----DIEDEVDKKLLLKALKKLNDREKQIMELRFGLAGGEEKT 205 (239)
T ss_pred ------CHHCCCCCCCCCCCHHHHHHCCCCCCCHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf ------0001536877665622430114898750667----899999999999999648999999999995788998406
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999997789999999999999999999997
Q gi|254780611|r 255 LENLSSEFEVSRERVRQIEARAFKKVQESIQK 286 (302)
Q Consensus 255 l~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~ 286 (302)
T Consensus 206 l~EIa~~lgISrerVrQIe~~AL~KLR~~l~k 237 (239)
T PRK08301 206 QKEVADMLGISQSYISRLEKRIIKRLKKEINK 237 (239)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998978999999999999999999985