HHsearch alignment for GI: 254780611 and conserved domain: PRK09047
>PRK09047 RNA polymerase factor sigma-70; Validated.
Probab=99.42 E-value=1.3e-11 Score=97.22 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66666677799999962199999999999827888889899999977899999999999999999999974
Q gi|254780611|r 217 EKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 217 e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 89 ~~~~~~e~~~~l~~ai~~Lp~~qR~vl~L~~~eg--ls~~EIA~~l~is~~tVk~~l~RAr~~Lr~~Le~~ 157 (161)
T PRK09047 89 DRLERAQVLQLIEEAIQKLPARQREAFLLRYWED--MDVAETAAAMGCSEGSVKTHCSRATHTLAKALEAK 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999819999999989999987--79999999989699999999999999999999986