HHsearch alignment for GI: 254780611 and conserved domain: PRK09635
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional.
Probab=98.50 E-value=2e-05 Score=55.85 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 99999430778756555579999888999999888998986218534568999757789999998532024600110230
Q gi|254780611|r 51 HRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTA 130 (302)
Q Consensus 51 ~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~~ 130 (302)
T Consensus 8 ~~~fe~hR~~L~~~ayRmlGs~~dAED~VQEa~lr~~~~~~~~---~-~~~~awL~ri~tn~c----------------- 66 (290)
T PRK09635 8 SAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVGD---I-DDERGWLIVVTSRLC----------------- 66 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC---C-CCHHHHHHHHHHHHH-----------------
T ss_conf 9999998999999999980898789999999999997477312---3-578889999999999-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 03589999999978878662447888246778886189832110000001223433552023234532000001235687
Q gi|254780611|r 131 NQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHDG 210 (302)
Q Consensus 131 ~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~~ 210 (302)
T Consensus 67 -----ld~LR~~r~rre~--------~~~------~~----------------~~~-----~~--------~~-~~~~~d 97 (290)
T PRK09635 67 -----LDHIKSASTRRER--------PQD------IA----------------AWH-----DG--------DA-SVSSVD 97 (290)
T ss_pred -----HHHHHHHHHCCCC--------CCC------CC----------------CCC-----CC--------CC-CCCCCC
T ss_conf -----9998766522678--------766------67----------------778-----76--------77-788898
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0565566666667779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r 211 QEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283 (302)
Q Consensus 211 ~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~ 283 (302)
T Consensus 98 p~~~~---~~~~~v~~All~~Le~L~P~eRaa~vLrdvfg--~~~~EIA~~Lg~s~~a~Rqll~RAR~~l~~~ 165 (290)
T PRK09635 98 PADRV---TLDDEVRLALLIMLERLGPAERVVFVLHEIFG--LPYQQIATTIGSQASTCRQLAHRARRKINES 165 (290)
T ss_pred HHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 28898---87778999999998629986854552698608--9889999996899899999999999987323