HHsearch alignment for GI: 254780611 and conserved domain: PRK09644
>PRK09644 RNA polymerase sigma factor SigM; Provisional.
Probab=99.46 E-value=7.7e-12 Score=98.64 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 99999943077875655557999988899999988899898621853456899975778999999853202460011023
Q gi|254780611|r 50 AHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTT 129 (302)
Q Consensus 50 r~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~IRiP~~ 129 (302)
T Consensus 3 ~E~ly~~y~~~l~~~~~~~~~d~~~AeDl~Qe~flk~~~~~~~~~~~---~~~~WL~~Ia~n~~~d~~Rk~~r~~~---- 75 (165)
T PRK09644 3 IEEIYKMYINDVYRYLFSLTKSHHLAEDLLQETFYRAYIYLEDYDNQ---KVKPWLFKVAYHTFIDFVRKEKKVVF---- 75 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHCCCCC----
T ss_conf 99999999999999999990999999999999999999988766813---18999999999999999997447577----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCCCCC
Q ss_conf 00358999999997887866244788824677888618983211000000122343355202323453200000123568
Q gi|254780611|r 130 ANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLVYDHD 209 (302)
Q Consensus 130 ~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~l~~~~~ 209 (302)
T Consensus 76 --------------------------------------~~~~-------------~~~~---------------~~--~~ 87 (165)
T PRK09644 76 --------------------------------------VGTD-------------EIET---------------IQ--AE 87 (165)
T ss_pred --------------------------------------CCHH-------------HHCC---------------CC--CC
T ss_conf --------------------------------------6521-------------1001---------------13--58
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 705655666666677799999962199999999999827888889899999977899999999999999999999974
Q gi|254780611|r 210 GQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 210 ~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 88 ~~~~~~----~~~e~~~~l~~~l~~Lp~~~r~v~~L~~~~~--~s~~EIA~~l~is~~tVk~rl~RAr~~Lr~~L~~e 159 (165)
T PRK09644 88 STEEYA----VAKNSYEKLIQIIHTLPVIEAQAILLCDVHE--LTYEEAASVLDLKENTYKSHLFRGRKRLKALLKEE 159 (165)
T ss_pred CHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 801499----9899999999998729999999999999988--89999999989399999999999999999999987