HHsearch alignment for GI: 254780611 and conserved domain: PRK09645
>PRK09645 RNA polymerase sigma factor SigL; Provisional.
Probab=99.51 E-value=2.2e-12 Score=102.24 Aligned_cols=165 Identities=10% Similarity=0.123 Sum_probs=115.1
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 28599999999943077875655557999988899999988899898621853456899975778999999853202460
Q gi|254780611|r 44 HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSL 123 (302)
Q Consensus 44 ~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~ 123 (302)
T Consensus 3 ~gD~~af~~Ly~~~~~~l~~~~~~~~~d~~~AeDivQe~F~k~~~~~~~~~~~-~~~~~~wL~~Ia~n~~~d~~------ 75 (171)
T PRK09645 3 DAEAALMRALYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWQHPEVLADP-TRSARAWLFTVARNLVIDER------ 75 (171)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH------
T ss_conf 63999999999999999999999990999999999999999999858870664-14199999999999999999------
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCC
Q ss_conf 01102300358999999997887866244788824677888618983211000000122343355202323453200000
Q gi|254780611|r 124 VKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDW 203 (302)
Q Consensus 124 IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~ 203 (302)
T Consensus 76 ----------------R~~~~~~-----~~~~---------------------------~~~~~~--------------- 92 (171)
T PRK09645 76 ----------------RSARARP-----VEGS---------------------------PDVLGV--------------- 92 (171)
T ss_pred ----------------HHHHCCC-----CCCC---------------------------CCHHHH---------------
T ss_conf ----------------9875475-----4344---------------------------423320---------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12356870565566666667779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r 204 LVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283 (302)
Q Consensus 204 l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~ 283 (302)
T Consensus 93 -~--~~~~~~~~~~----~~~~~~l~~ai~~L~~~~r~v~~l~~~~g--~s~~EIA~~l~is~~tVk~~l~ra~~~Lr~~ 163 (171)
T PRK09645 93 -P--EQSTPDEVDA----ALDRLLIADALAQLSPEHRAVLVRSYYRG--WSTAQIAADLGIPEGTVKSRLHYAVRALRLT 163 (171)
T ss_pred -C--CCCCCCHHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf -2--5688316889----99999999999759999887989999869--9999999998929999999999999999999
Q ss_pred HHHH
Q ss_conf 9974
Q gi|254780611|r 284 IQKQ 287 (302)
Q Consensus 284 l~~~ 287 (302)
T Consensus 164 L~~~ 167 (171)
T PRK09645 164 LQEM 167 (171)
T ss_pred HHHC
T ss_conf 9970