HHsearch alignment for GI: 254780611 and conserved domain: PRK09645

>PRK09645 RNA polymerase sigma factor SigL; Provisional.
Probab=99.51  E-value=2.2e-12  Score=102.24  Aligned_cols=165  Identities=10%  Similarity=0.123  Sum_probs=115.1

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             28599999999943077875655557999988899999988899898621853456899975778999999853202460
Q gi|254780611|r   44 HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSL  123 (302)
Q Consensus        44 ~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~  123 (302)
T Consensus         3 ~gD~~af~~Ly~~~~~~l~~~~~~~~~d~~~AeDivQe~F~k~~~~~~~~~~~-~~~~~~wL~~Ia~n~~~d~~------   75 (171)
T PRK09645          3 DAEAALMRALYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWQHPEVLADP-TRSARAWLFTVARNLVIDER------   75 (171)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH------
T ss_conf             63999999999999999999999990999999999999999999858870664-14199999999999999999------


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCC
Q ss_conf             01102300358999999997887866244788824677888618983211000000122343355202323453200000
Q gi|254780611|r  124 VKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDW  203 (302)
Q Consensus       124 IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~  203 (302)
T Consensus        76 ----------------R~~~~~~-----~~~~---------------------------~~~~~~---------------   92 (171)
T PRK09645         76 ----------------RSARARP-----VEGS---------------------------PDVLGV---------------   92 (171)
T ss_pred             ----------------HHHHCCC-----CCCC---------------------------CCHHHH---------------
T ss_conf             ----------------9875475-----4344---------------------------423320---------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             12356870565566666667779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r  204 LVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES  283 (302)
Q Consensus       204 l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~  283 (302)
T Consensus        93 -~--~~~~~~~~~~----~~~~~~l~~ai~~L~~~~r~v~~l~~~~g--~s~~EIA~~l~is~~tVk~~l~ra~~~Lr~~  163 (171)
T PRK09645         93 -P--EQSTPDEVDA----ALDRLLIADALAQLSPEHRAVLVRSYYRG--WSTAQIAADLGIPEGTVKSRLHYAVRALRLT  163 (171)
T ss_pred             -C--CCCCCCHHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -2--5688316889----99999999999759999887989999869--9999999998929999999999999999999


Q ss_pred             HHHH
Q ss_conf             9974
Q gi|254780611|r  284 IQKQ  287 (302)
Q Consensus       284 l~~~  287 (302)
T Consensus       164 L~~~  167 (171)
T PRK09645        164 LQEM  167 (171)
T ss_pred             HHHC
T ss_conf             9970