HHsearch alignment for GI: 254780611 and conserved domain: PRK09646
>PRK09646 RNA polymerase sigma factor SigK; Reviewed.
Probab=99.77 E-value=5.9e-17 Score=132.86 Aligned_cols=182 Identities=16% Similarity=0.209 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99998999999999998285999999999430778756555579999888999999888998986218534568999757
Q gi|254780611|r 27 PMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSM 106 (302)
Q Consensus 27 ~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~ 106 (302)
T Consensus 10 ~~~~~~d~~~Li~~~~-~GD~~Af~~Ly~~y~~~l~~~~~~~~~d~~~AeDivQevFl~~~~~~~~~~~~~~-~~~~WL~ 87 (194)
T PRK09646 10 PPAPSPDLDALLRRVA-RGDQDAFAELYDRTASRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPARG-SALAWLL 87 (194)
T ss_pred CCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHH
T ss_conf 6437966999999999-3679999999999999999999999299999999999999999997521475426-5999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 78999999853202460011023003589999999978878662447888246778886189832110000001223433
Q gi|254780611|r 107 WWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESL 186 (302)
Q Consensus 107 ~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SL 186 (302)
T Consensus 88 ~Ia~n~~~d----------------------~~R~~~~~~~~--------~~--------------------~~-~~~~~ 116 (194)
T PRK09646 88 TLAHRRAVD----------------------RVRSEQAASQR--------EV--------------------RY-GARNV 116 (194)
T ss_pred HHHHHHHHH----------------------HHHHHHHHHHH--------HH--------------------HH-CCCCC
T ss_conf 999999999----------------------99998741324--------43--------------------20-00236
Q ss_pred HHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 55202323453200000123568705655666666677799999962199999999999827888889899999977899
Q gi|254780611|r 187 NALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSR 266 (302)
Q Consensus 187 d~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~ 266 (302)
T Consensus 117 ~-------~---------~--~~~~~----e~~~~~~~~~~l~~~l~~Lp~~~R~vi~L~~~~g--~s~~EIA~~Lgis~ 172 (194)
T PRK09646 117 D-------P---------A--FDQVA----EEVEARLERERVRGCLDALTDTQREAITLAYYGG--LTYREVAERLAVPL 172 (194)
T ss_pred C-------C---------C--CCCCH----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCH
T ss_conf 8-------8---------7--55314----7899899999999999867815789999999939--99999999989199
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780611|r 267 ERVRQIEARAFKKVQESIQ 285 (302)
Q Consensus 267 eRVrQI~~~AL~kLR~~l~ 285 (302)
T Consensus 173 ~TVk~rl~rA~~~LR~~LG 191 (194)
T PRK09646 173 GTVKTRMRDGLRRLRDCLG 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999837