HHsearch alignment for GI: 254780611 and conserved domain: PRK09647
>PRK09647 RNA polymerase sigma factor SigE; Reviewed.
Probab=99.68 E-value=1.5e-14 Score=116.72 Aligned_cols=184 Identities=14% Similarity=0.206 Sum_probs=129.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99998999999999998285999999999430778756555579999888999999888998986218534568999757
Q gi|254780611|r 27 PMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSM 106 (302)
Q Consensus 27 ~~Lt~eee~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~ 106 (302)
T Consensus 26 ~~~~~~~~~~~~~~~~~~~d~~AF~eLv~rh~~~vy~~a~r~~gn~~dAEDlvQEtFlka~r~l~~f~~~---sf~tWL~ 102 (222)
T PRK09647 26 EPSDELTGTAVFDATGDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPG---TFEGWLH 102 (222)
T ss_pred CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHH
T ss_conf 9865444448887414524589999999999999999999985999899999999999999862224773---0899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 78999999853202460011023003589999999978878662447888246778886189832110000001223433
Q gi|254780611|r 107 WWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESL 186 (302)
Q Consensus 107 ~wIr~~I~~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SL 186 (302)
T Consensus 103 rIA~N~~iD~----------------------~Rr~~r-~--------~~---------------------------~~~ 124 (222)
T PRK09647 103 RITTNLFLDM----------------------VRRRQR-I--------RM---------------------------EAL 124 (222)
T ss_pred HHHHHHHHHH----------------------HHHCCC-C--------CC---------------------------CCC
T ss_conf 9999999999----------------------981124-6--------65---------------------------556
Q ss_pred HHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 55202323453200000123568705655666666677799999962199999999999827888889899999977899
Q gi|254780611|r 187 NALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSR 266 (302)
Q Consensus 187 d~~i~~~d~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~ 266 (302)
T Consensus 125 ~e------~-----~e~~~~~~~~pe~~~~~----~~~~~~L~~al~~Lp~~qR~vl~Lr~~eg--lS~~EIAe~Lgis~ 187 (222)
T PRK09647 125 PE------D-----YDRVPADEPNPEQIYHD----ARLDPDLQAALDSLPPEFRAAVVLCDIEG--LSYEEIAATLGVKL 187 (222)
T ss_pred CC------H-----HHHCCCCCCCHHHHHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCH
T ss_conf 11------3-----44256678997899999----99999999999829999988998799639--99999999989399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999740
Q gi|254780611|r 267 ERVRQIEARAFKKVQESIQKQV 288 (302)
Q Consensus 267 eRVrQI~~~AL~kLR~~l~~~~ 288 (302)
T Consensus 188 gTVKsrl~RAr~~LR~~Lea~~ 209 (222)
T PRK09647 188 GTVRSRIHRGRQALRAYLAAHA 209 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999987109