HHsearch alignment for GI: 254780611 and conserved domain: PRK09651

>PRK09651 RNA polymerase sigma factor FecI; Provisional.
Probab=99.37  E-value=7.7e-11  Score=91.99  Aligned_cols=165  Identities=13%  Similarity=0.097  Sum_probs=118.1

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             28599999999943077875655557999988899999988899898621853456899975778999999853202460
Q gi|254780611|r   44 HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSL  123 (302)
Q Consensus        44 ~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~  123 (302)
T Consensus         6 ~~~~~AFe~Ly~~~~~~l~~~~~~~~~~~~~AeDivQe~Flr~~~~-~~~~~~~--~~~a~L~~iarn~~id~~Rr~~~-   81 (172)
T PRK09651          6 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR--DPRSFLCTIAKRVMVDLFRRNAL-   81 (172)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             5586699999999999999999999598868999999999999863-8523346--88999999999999999999888-


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCC
Q ss_conf             01102300358999999997887866244788824677888618983211000000122343355202323453200000
Q gi|254780611|r  124 VKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDW  203 (302)
Q Consensus       124 IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~  203 (302)
T Consensus        82 -------------------~~~~------------~~~~~~-------------------------~~------------   93 (172)
T PRK09651         82 -------------------EKAY------------LEMLAL-------------------------MP------------   93 (172)
T ss_pred             -------------------HHHH------------HHHHHH-------------------------CC------------
T ss_conf             -------------------8878------------888874-------------------------75------------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             12356870565566666667779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r  204 LVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES  283 (302)
Q Consensus       204 l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~  283 (302)
T Consensus        94 -~~~~~~~e~~~----~~~e~~~~l~~~l~~Lp~~~R~v~~L~~~eg--ls~~EIA~~lgiS~~tVk~~l~rAlk~c~~~  166 (172)
T PRK09651         94 -EGGAPSPEERE----SQLETLQLLDSMLDGLNGKTREAFLLSQLDG--LTYSEIAHKLGVSISSVKKYVAKAVEHCLLF  166 (172)
T ss_pred             -CCCCCCHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -54599988999----9999999999998709999999999998839--9999999998939999999999999999999


Q ss_pred             HHHH
Q ss_conf             9974
Q gi|254780611|r  284 IQKQ  287 (302)
Q Consensus       284 l~~~  287 (302)
T Consensus       167 ~~~~  170 (172)
T PRK09651        167 RLEY  170 (172)
T ss_pred             HHHC
T ss_conf             9873