HHsearch alignment for GI: 254780611 and conserved domain: PRK09651
>PRK09651 RNA polymerase sigma factor FecI; Provisional.
Probab=99.37 E-value=7.7e-11 Score=91.99 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=118.1
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 28599999999943077875655557999988899999988899898621853456899975778999999853202460
Q gi|254780611|r 44 HGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSL 123 (302)
Q Consensus 44 ~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~~~i~~~~~~ 123 (302)
T Consensus 6 ~~~~~AFe~Ly~~~~~~l~~~~~~~~~~~~~AeDivQe~Flr~~~~-~~~~~~~--~~~a~L~~iarn~~id~~Rr~~~- 81 (172)
T PRK09651 6 TTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIR--DPRSFLCTIAKRVMVDLFRRNAL- 81 (172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 5586699999999999999999999598868999999999999863-8523346--88999999999999999999888-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHCC
Q ss_conf 01102300358999999997887866244788824677888618983211000000122343355202323453200000
Q gi|254780611|r 124 VKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDW 203 (302)
Q Consensus 124 IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d~~~~~~~d~ 203 (302)
T Consensus 82 -------------------~~~~------------~~~~~~-------------------------~~------------ 93 (172)
T PRK09651 82 -------------------EKAY------------LEMLAL-------------------------MP------------ 93 (172)
T ss_pred -------------------HHHH------------HHHHHH-------------------------CC------------
T ss_conf -------------------8878------------888874-------------------------75------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12356870565566666667779999996219999999999982788888989999997789999999999999999999
Q gi|254780611|r 204 LVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQES 283 (302)
Q Consensus 204 l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~ 283 (302)
T Consensus 94 -~~~~~~~e~~~----~~~e~~~~l~~~l~~Lp~~~R~v~~L~~~eg--ls~~EIA~~lgiS~~tVk~~l~rAlk~c~~~ 166 (172)
T PRK09651 94 -EGGAPSPEERE----SQLETLQLLDSMLDGLNGKTREAFLLSQLDG--LTYSEIAHKLGVSISSVKKYVAKAVEHCLLF 166 (172)
T ss_pred -CCCCCCHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf -54599988999----9999999999998709999999999998839--9999999998939999999999999999999
Q ss_pred HHHH
Q ss_conf 9974
Q gi|254780611|r 284 IQKQ 287 (302)
Q Consensus 284 l~~~ 287 (302)
T Consensus 167 ~~~~ 170 (172)
T PRK09651 167 RLEY 170 (172)
T ss_pred HHHC
T ss_conf 9873