HHsearch alignment for GI: 254780611 and conserved domain: PRK09652
>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=99.78 E-value=5.7e-17 Score=132.95 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=130.6
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999828599999999943077875655557999988899999988899898621853456899975778999999
Q gi|254780611|r 35 YVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQ 114 (302)
Q Consensus 35 ~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~ 114 (302)
T Consensus 7 ~~Li~~~~-~Gd~~A~~~L~~~y~~~l~~~~~~~~~~~~~aeDv~Qe~fl~l~~~~~~~~~~--~~~~~wL~~iarn~~~ 83 (192)
T PRK09652 7 QELVERVQ-QGDRAAFELLVRKYQPRLYRLLSRLVRDPADAEDLAQETFIKAYRALPSFRGG--AAFYTWLYRIAVNTAI 83 (192)
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHH
T ss_conf 99999998-38899999999999999999999996999999998759999988711345771--1799999999999999
Q ss_pred HHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 85320246001102300358999999997887866244788824677888618983211000000122343355202323
Q gi|254780611|r 115 EYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSD 194 (302)
Q Consensus 115 ~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d 194 (302)
T Consensus 84 d~~r~~~r~----------------------~~~--------~---------------------------~~~~~~~~-- 104 (192)
T PRK09652 84 NYLRKQGRR----------------------PPE--------S---------------------------DLDAEDAE-- 104 (192)
T ss_pred HHHHHHHCC----------------------CCC--------C---------------------------CCCHHHHH--
T ss_conf 999997165----------------------665--------5---------------------------40023454--
Q ss_pred CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 45320000012356870565566666667779999996219999999999982788888989999997789999999999
Q gi|254780611|r 195 KNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEA 274 (302)
Q Consensus 195 ~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~ 274 (302)
T Consensus 105 ---~~~~~~~~~~~~~~e~~~----~~~e~~~~l~~~l~~L~~~~r~v~~l~~~~~--~s~~EIA~~lgis~~tVk~~l~ 175 (192)
T PRK09652 105 ---YFEDADALREISSPEEEL----LSQELEQRVRRAIESLPEELRTAITLREIEG--LSYEEIAEIMGCPIGTVRSRIF 175 (192)
T ss_pred ---HHCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHH
T ss_conf ---300000355557679999----9999999999999839999998888999729--9999999998939999999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999997401
Q gi|254780611|r 275 RAFKKVQESIQKQVE 289 (302)
Q Consensus 275 ~AL~kLR~~l~~~~~ 289 (302)
T Consensus 176 Ra~~~Lr~~L~~~~~ 190 (192)
T PRK09652 176 RAREALRAKLQPLLD 190 (192)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999898771