HHsearch alignment for GI: 254780611 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=96.81 E-value=0.0044 Score=40.15 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 199999999999827888889899999977899999999999999999
Q gi|254780611|r 234 VLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQ 281 (302)
Q Consensus 234 ~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR 281 (302)
T Consensus 149 ~Lt~RE~eVL~ll~---~G~snkeIA~~L~iS~~TV~~h~~~I~~KL~ 193 (210)
T PRK09935 149 PLSNREVTVLRYLA---NGLSNKEIAEQLLLSNKTISAHKSNIYGKLG 193 (210)
T ss_pred CCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99989999999998---6999999998949889999999999999819