HHsearch alignment for GI: 254780611 and conserved domain: PRK12527
>PRK12527 RNA polymerase sigma factor; Reviewed.
Probab=99.27 E-value=3.1e-10 Score=87.95 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677799999962199999999999827888889899999977899999999999999999999974
Q gi|254780611|r 222 KNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 222 ~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 93 ~e~~~~l~~al~~Lp~~~R~v~~L~~~eg--ls~~EIA~~lgis~~tVk~~l~rA~k~Lr~~L~~~ 156 (159)
T PRK12527 93 GQRLALLQRALAELPPICRESFLLRKLEG--LSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMRQW 156 (159)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999869999989998898739--79999999989199999999999999999999977