HHsearch alignment for GI: 254780611 and conserved domain: PRK12527

>PRK12527 RNA polymerase sigma factor; Reviewed.
Probab=99.27  E-value=3.1e-10  Score=87.95  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             677799999962199999999999827888889899999977899999999999999999999974
Q gi|254780611|r  222 KNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ  287 (302)
Q Consensus       222 ~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~  287 (302)
T Consensus        93 ~e~~~~l~~al~~Lp~~~R~v~~L~~~eg--ls~~EIA~~lgis~~tVk~~l~rA~k~Lr~~L~~~  156 (159)
T PRK12527         93 GQRLALLQRALAELPPICRESFLLRKLEG--LSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMRQW  156 (159)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999869999989998898739--79999999989199999999999999999999977