HHsearch alignment for GI: 254780611 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=94.28 E-value=0.35 Score=27.43 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHH-HCCCHHHHHHHHHHHC---CCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996-2199999999999827---8888--89899999977899999999999999999999
Q gi|254780611|r 228 LTRSM-SVLNPRERRIFEARRL---QENP--VTLENLSSEFEVSRERVRQIEARAFKKVQESI 284 (302)
Q Consensus 228 L~~~l-~~L~~rEr~II~~ry~---~~~~--~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l 284 (302)
T Consensus 609 ~~~aL~e~LTDRQ~eaLqtAY~sGyFEwPR~sTGeElAesLgIS~pTfhqHLRaaerKL~~a~ 671 (674)
T PRK13558 609 FREELRNDLTDRQLTALQKAYVSGYFEWPRRAEGKQLAESMDIVPSTYHQHLQAAKQKLVGAF 671 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999998760498999999998647577887787899998709883889999999999999987