HHsearch alignment for GI: 254780611 and conserved domain: PRK13919
>PRK13919 putative RNA polymerase sigma E protein; Provisional.
Probab=99.77 E-value=9.2e-17 Score=131.57 Aligned_cols=176 Identities=22% Similarity=0.237 Sum_probs=125.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999828599999999943077875655557999988899999988899898621853456899975778999999
Q gi|254780611|r 35 YVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQ 114 (302)
Q Consensus 35 ~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~ 114 (302)
T Consensus 11 ~eLi~~~~-~GD~~Af~~L~~ry~~~l~~~~~~~~~d~~~AEDivQe~flki~~~~~~~~~~~~-~~~~wL~~ia~n~~~ 88 (187)
T PRK13919 11 EALLALVA-RGDEEAFRALFRRYAGSFLALARRMGLDGAAAEDVVQEAMIRVWQKAKEFDPRRG-SARAFLLTLGHHAAV 88 (187)
T ss_pred HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 99999999-4779999999999999999999999099999999999999999999987687646-499999999999999
Q ss_pred HHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 85320246001102300358999999997887866244788824677888618983211000000122343355202323
Q gi|254780611|r 115 EYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSD 194 (302)
Q Consensus 115 ~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d 194 (302)
T Consensus 89 d~~Rk~~~~---~---------------------~-~~~-~~~~~----------------------~~~~~~------- 113 (187)
T PRK13919 89 DEVRRRAAR---P---------------------L-PLE-PDPER----------------------EEEAFD------- 113 (187)
T ss_pred HHHHHHHCC---C---------------------C-CCC-CCCHH----------------------HHHHCC-------
T ss_conf 999976267---7---------------------8-777-66101----------------------133204-------
Q ss_pred CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 45320000012356870565566666667779999996219999999999982788888989999997789999999999
Q gi|254780611|r 195 KNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEA 274 (302)
Q Consensus 195 ~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~ 274 (302)
T Consensus 114 ---------~~~~~~~~e--------~~~~~~~l~~al~~L~~~~r~vi~L~~~~g--~s~~EIA~~L~is~~TVk~~l~ 174 (187)
T PRK13919 114 ---------LPGPGLDEE--------GHLDRTRLGRALKALSPEERRVIEVLYYQG--YTHREAARLLGLPLGTLKTWAR 174 (187)
T ss_pred ---------CCCCCCCHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHH
T ss_conf ---------688640278--------789999999999849999999999999859--9999999998939999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254780611|r 275 RAFKKVQESIQK 286 (302)
Q Consensus 275 ~AL~kLR~~l~~ 286 (302)
T Consensus 175 rA~k~Lr~~Lke 186 (187)
T PRK13919 175 RALSKLKEVLRE 186 (187)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998459