HHsearch alignment for GI: 254780611 and conserved domain: PRK13919

>PRK13919 putative RNA polymerase sigma E protein; Provisional.
Probab=99.77  E-value=9.2e-17  Score=131.57  Aligned_cols=176  Identities=22%  Similarity=0.237  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999828599999999943077875655557999988899999988899898621853456899975778999999
Q gi|254780611|r   35 YVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQ  114 (302)
Q Consensus        35 ~~l~~~~~~~gd~~Ar~~Li~~nlrlV~~iA~~y~~~g~~~~DLiQeG~iGLi~Ai~kFDp~kG~~FsTYA~~wIr~~I~  114 (302)
T Consensus        11 ~eLi~~~~-~GD~~Af~~L~~ry~~~l~~~~~~~~~d~~~AEDivQe~flki~~~~~~~~~~~~-~~~~wL~~ia~n~~~   88 (187)
T PRK13919         11 EALLALVA-RGDEEAFRALFRRYAGSFLALARRMGLDGAAAEDVVQEAMIRVWQKAKEFDPRRG-SARAFLLTLGHHAAV   88 (187)
T ss_pred             HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHH
T ss_conf             99999999-4779999999999999999999999099999999999999999999987687646-499999999999999


Q ss_pred             HHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             85320246001102300358999999997887866244788824677888618983211000000122343355202323
Q gi|254780611|r  115 EYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSD  194 (302)
Q Consensus       115 ~~i~~~~~~IRiP~~~~~r~l~~~~rk~~~~~~~~~~~~~~~~~~~eiA~~Lgis~~~v~~l~~~~~~~~SLd~~i~~~d  194 (302)
T Consensus        89 d~~Rk~~~~---~---------------------~-~~~-~~~~~----------------------~~~~~~-------  113 (187)
T PRK13919         89 DEVRRRAAR---P---------------------L-PLE-PDPER----------------------EEEAFD-------  113 (187)
T ss_pred             HHHHHHHCC---C---------------------C-CCC-CCCHH----------------------HHHHCC-------
T ss_conf             999976267---7---------------------8-777-66101----------------------133204-------


Q ss_pred             CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             45320000012356870565566666667779999996219999999999982788888989999997789999999999
Q gi|254780611|r  195 KNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEA  274 (302)
Q Consensus       195 ~~~~~~~d~l~~~~~~~~~~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~  274 (302)
T Consensus       114 ---------~~~~~~~~e--------~~~~~~~l~~al~~L~~~~r~vi~L~~~~g--~s~~EIA~~L~is~~TVk~~l~  174 (187)
T PRK13919        114 ---------LPGPGLDEE--------GHLDRTRLGRALKALSPEERRVIEVLYYQG--YTHREAARLLGLPLGTLKTWAR  174 (187)
T ss_pred             ---------CCCCCCCHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHH
T ss_conf             ---------688640278--------789999999999849999999999999859--9999999998939999999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999997
Q gi|254780611|r  275 RAFKKVQESIQK  286 (302)
Q Consensus       275 ~AL~kLR~~l~~  286 (302)
T Consensus       175 rA~k~Lr~~Lke  186 (187)
T PRK13919        175 RALSKLKEVLRE  186 (187)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998459