HHsearch alignment for GI: 254780611 and conserved domain: TIGR01637
>TIGR01637 phage_arpU phage transcriptional regulator, ArpU family; InterPro: IPR006524 These sequences represent a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. This group of sequences could be a phage transcriptional activator family..
Probab=96.45 E-value=0.034 Score=34.20 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999962199999999999827888889899999977899999999999999999999974
Q gi|254780611|r 224 RRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287 (302)
Q Consensus 224 ~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRVrQI~~~AL~kLR~~l~~~ 287 (302)
T Consensus 73 ~~~~v~~~~~~L~~~~R~Il~~~Y~~~~~~~D~~i~~el~~s~~~Yy~~K~rA~l~lA~~l~~~ 136 (139)
T TIGR01637 73 IVNAVSKAINQLDEISRQILYDKYLEEDKKSDYQIMNELGYSHSQYYRIKKRALLRLAEALKIG 136 (139)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999984088889999999710455303788888743777899999999999999985221