HHsearch alignment for GI: 254780611 and conserved domain: TIGR02233
>TIGR02233 Myxo_sigma_rel Myxococcus probable DNA-binding regulatory protein.
Probab=97.96 E-value=6.9e-05 Score=52.19 Aligned_cols=77 Identities=18% Similarity=0.418 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHC
Q ss_conf 55666666677799999962199999999999827888889899999977899999----99999999999999997401
Q gi|254780611|r 214 VLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERV----RQIEARAFKKVQESIQKQVE 289 (302)
Q Consensus 214 ~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRV----rQI~~~AL~kLR~~l~~~~~ 289 (302)
T Consensus 4 ~~lr~~~R~~~~~al~~Ala~L~~~eR~lLRLH~~~g--LsldR~~~lY~~hrStvaR~v~~are~Ll~~Tr~~LaeRL~ 81 (106)
T TIGR02233 4 AYLREEARQHLSAALSEALAALSERERTLLRLHHVEG--LSLDRLGTLYGVHRSTVARWVAGARELLLERTRQELAERLR 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6788999999999999997528963335666776236--55899998847886169999999999999998998767407
Q ss_pred CCC
Q ss_conf 224
Q gi|254780611|r 290 LSS 292 (302)
Q Consensus 290 ~~~ 292 (302)
T Consensus 82 L~~ 84 (106)
T TIGR02233 82 LTS 84 (106)
T ss_pred CCH
T ss_conf 886