HHsearch alignment for GI: 254780611 and conserved domain: TIGR02233

>TIGR02233 Myxo_sigma_rel Myxococcus probable DNA-binding regulatory protein.
Probab=97.96  E-value=6.9e-05  Score=52.19  Aligned_cols=77  Identities=18%  Similarity=0.418  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHHHC
Q ss_conf             55666666677799999962199999999999827888889899999977899999----99999999999999997401
Q gi|254780611|r  214 VLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERV----RQIEARAFKKVQESIQKQVE  289 (302)
Q Consensus       214 ~~~e~~e~~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRV----rQI~~~AL~kLR~~l~~~~~  289 (302)
T Consensus         4 ~~lr~~~R~~~~~al~~Ala~L~~~eR~lLRLH~~~g--LsldR~~~lY~~hrStvaR~v~~are~Ll~~Tr~~LaeRL~   81 (106)
T TIGR02233         4 AYLREEARQHLSAALSEALAALSERERTLLRLHHVEG--LSLDRLGTLYGVHRSTVARWVAGARELLLERTRQELAERLR   81 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6788999999999999997528963335666776236--55899998847886169999999999999998998767407


Q ss_pred             CCC
Q ss_conf             224
Q gi|254780611|r  290 LSS  292 (302)
Q Consensus       290 ~~~  292 (302)
T Consensus        82 L~~   84 (106)
T TIGR02233        82 LTS   84 (106)
T ss_pred             CCH
T ss_conf             886