HHsearch alignment for GI: 254780611 and conserved domain: TIGR02959

>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family; InterPro: IPR014304 This entry is a group of RNA polymerase sigma factors where one of the members is designated as SigZ in Bacillus subtilis . This group has a very sporadic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member Dechloromonas aromatica (strain RCB), that appears to have two of these sigma factors. A member of which appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri (strain ATCC 700601 / ES114), where a second one is chromosomally encoded..
Probab=97.48  E-value=0.0004  Score=47.11  Aligned_cols=62  Identities=16%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             677799999962199999999999827888889899999977899999-99999999999999997
Q gi|254780611|r  222 KNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVSRERV-RQIEARAFKKVQESIQK  286 (302)
Q Consensus       222 ~~~~~~L~~~l~~L~~rEr~II~~ry~~~~~~Tl~EIa~~lgiS~eRV-rQI~~~AL~kLR~~l~~  286 (302)
T Consensus        88 ~e~~~Cl~~~i~~LP~~~r~a~~L~el--~G~sQ~e~A~kLGlSlSGaKSRV-QRGR~~Lk~~L~~  150 (170)
T TIGR02959        88 KELSQCLRPMIKELPDEYREAIRLTEL--EGLSQKEIAEKLGLSLSGAKSRV-QRGRKKLKELLED  150 (170)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHC--CCCCHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHC
T ss_conf             568888899887569867889888750--79982799876175335156788-9999999987742