HHsearch alignment for GI: 254780611 and conserved domain: pfam00140

>pfam00140 Sigma70_r1_2 Sigma-70 factor, region 1.2.
Probab=98.07  E-value=4e-06  Score=60.49  Aligned_cols=36  Identities=36%  Similarity=0.574  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
Q ss_conf             4059999998407999998999999999998285999
Q gi|254780611|r   13 EIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSA   49 (302)
Q Consensus        13 ~~~~~~yl~~i~~~~~Lt~eee~~l~~~~~~~gd~~A   49 (302)
T Consensus         1 ~D~v~~YL~eIg~~pLLt~eEEi~LA~~i~~-g~~~~   36 (37)
T pfam00140         1 SDSVRLYLREIGRVPLLTAEEEVELARRIEA-GDELA   36 (37)
T ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-CCHHH
T ss_conf             9709999998377678998999999999981-63731