BLAST/PSIBLAST alignment of GI: 254780611 and GI: 116253507 at iteration 1
>gi|116253507|ref|YP_769345.1| RNA polymerase factor sigma-32 [Rhizobium leguminosarum bv. viciae 3841] Length = 302
>gi|115258155|emb|CAK09256.1| putative RNA polymerase sigma-32 factor [Rhizobium leguminosarum bv. viciae 3841] Length = 302
 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/288 (73%), Positives = 244/288 (84%)

Query: 1   MNRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRL 60
           M R  +  I  GE GL+RY+ EIRK PMLE Q+EY+LAKRY EHGD  AAH+LVTSHLRL
Sbjct: 1   MARNTLPSITAGEAGLNRYLDEIRKFPMLEPQQEYMLAKRYAEHGDRDAAHKLVTSHLRL 60

Query: 61  VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
           V KIAMGYRGYGLPI EVVSEGN+GLMQAVKKFD ERGFRLATY+MWWIKA++QEYILRS
Sbjct: 61  VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDAERGFRLATYAMWWIKASIQEYILRS 120

Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
           WSLVK+GTTANQKRLFFNLRRLKG +QAI D +LKPE V  IA KLNVSE EVISMN RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVSEIATKLNVSEEEVISMNRRL 180

Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRER 240
           +GD SLNA I +++ +  QWQDWLV DHD QE VLIE++E   RR ML ++MSVLN RER
Sbjct: 181 SGDASLNAPIKAAEGDGGQWQDWLVDDHDSQEDVLIEQDELDTRRRMLAKAMSVLNERER 240

Query: 241 RIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQV 288
           RIFEARRL E+PVTLE+LS+EF++SRERVRQIE RAF+KVQ++++K+ 
Sbjct: 241 RIFEARRLAEDPVTLEDLSTEFDISRERVRQIEVRAFEKVQDAVRKEA 288