BLAST/PSIBLAST alignment of GI: 254780611 and GI: 116253507 at iteration 1
>gi|116253507|ref|YP_769345.1| RNA polymerase factor sigma-32 [Rhizobium leguminosarum bv. viciae 3841] Length = 302
>gi|115258155|emb|CAK09256.1| putative RNA polymerase sigma-32 factor [Rhizobium leguminosarum bv. viciae 3841] Length = 302
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/288 (73%), Positives = 244/288 (84%)
Query: 1 MNRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRL 60
M R + I GE GL+RY+ EIRK PMLE Q+EY+LAKRY EHGD AAH+LVTSHLRL
Sbjct: 1 MARNTLPSITAGEAGLNRYLDEIRKFPMLEPQQEYMLAKRYAEHGDRDAAHKLVTSHLRL 60
Query: 61 VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
V KIAMGYRGYGLPI EVVSEGN+GLMQAVKKFD ERGFRLATY+MWWIKA++QEYILRS
Sbjct: 61 VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDAERGFRLATYAMWWIKASIQEYILRS 120
Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
WSLVK+GTTANQKRLFFNLRRLKG +QAI D +LKPE V IA KLNVSE EVISMN RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVSEIATKLNVSEEEVISMNRRL 180
Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRER 240
+GD SLNA I +++ + QWQDWLV DHD QE VLIE++E RR ML ++MSVLN RER
Sbjct: 181 SGDASLNAPIKAAEGDGGQWQDWLVDDHDSQEDVLIEQDELDTRRRMLAKAMSVLNERER 240
Query: 241 RIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQV 288
RIFEARRL E+PVTLE+LS+EF++SRERVRQIE RAF+KVQ++++K+
Sbjct: 241 RIFEARRLAEDPVTLEDLSTEFDISRERVRQIEVRAFEKVQDAVRKEA 288