BLAST/PSIBLAST alignment of GI: 254780611 and GI: 15889716 at iteration 1
>gi|15889716|ref|NP_355397.1| RNA polymerase factor sigma-32 [Agrobacterium tumefaciens str. C58] Length = 300
>gi|15157628|gb|AAK88182.1| RNA polymerase sigma-32 factor [Agrobacterium tumefaciens str. C58] Length = 300
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/288 (74%), Positives = 242/288 (84%)
Query: 1 MNRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRL 60
M R ++ I GE GL+RY+ EIRK PMLE QEEY+L KRY EHGD AAH+LVTSHLRL
Sbjct: 1 MARNSLPTITAGEAGLNRYLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRL 60
Query: 61 VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
V KIAMGYRGYGLPI EVVSEGN+GLMQAVKKFDPERGFRLATY+MWWIKA++QEYILRS
Sbjct: 61 VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRS 120
Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
WSLVK+GTTANQKRLFFNLRRLKG +QAI D +LKPE V IA KL VSE EVISMN RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRL 180
Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRER 240
GD SLNA I +S+ S QWQDWLV DH+ QE VLIE++E + RR ML ++M VLN RER
Sbjct: 181 HGDASLNAPIKASEGESGQWQDWLVDDHESQEAVLIEQDELETRRRMLAKAMGVLNERER 240
Query: 241 RIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQV 288
RIFEARRL E+PVTLE LSSEF++SRERVRQIE RAF+KVQE++QK+
Sbjct: 241 RIFEARRLAEDPVTLEELSSEFDISRERVRQIEVRAFEKVQEAVQKEA 288