BLAST/PSIBLAST alignment of GI: 254780611 and GI: 209550663 at iteration 1
>gi|209550663|ref|YP_002282580.1| RNA polymerase factor sigma-32 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 302
>gi|209536419|gb|ACI56354.1| RNA polymerase, sigma 32 subunit, RpoH [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 302
 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/289 (73%), Positives = 245/289 (84%)

Query: 1   MNRKNMSIIVNGEIGLSRYIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRL 60
           M R  +  I  GE GL+RY+ EIRK PMLE Q+EY+LAKRY EHGD  AAH+LVTSHLRL
Sbjct: 1   MARNTLPSITAGEAGLNRYLDEIRKFPMLEPQQEYMLAKRYAEHGDRDAAHKLVTSHLRL 60

Query: 61  VVKIAMGYRGYGLPISEVVSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRS 120
           V KIAMGYRGYGLPI EVVSEGN+GLMQAVKKFD ERGFRLATY+MWWIKA++QEYILRS
Sbjct: 61  VAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDAERGFRLATYAMWWIKASIQEYILRS 120

Query: 121 WSLVKIGTTANQKRLFFNLRRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRL 180
           WSLVK+GTTANQKRLFFNLRRLKG +QAI D +LKPE V  IA KL VSE EVISMN RL
Sbjct: 121 WSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVSEIATKLKVSEEEVISMNRRL 180

Query: 181 AGDESLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRER 240
           +GD SLNA I +++ +S QWQDWLV DHD QE VLIE++E   RR ML ++MSVLN RER
Sbjct: 181 SGDASLNAPIKAAEGDSGQWQDWLVDDHDSQEDVLIEQDELDTRRRMLAKAMSVLNERER 240

Query: 241 RIFEARRLQENPVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQVE 289
           RIFEARRL E+PVTLE+LS+EF++SRERVRQIE RAF+KVQ++++K+ +
Sbjct: 241 RIFEARRLAEDPVTLEDLSTEFDISRERVRQIEVRAFEKVQDAVRKEAQ 289