RPSBLAST alignment for GI: 254780611 and conserved domain: TIGR02941
>gnl|CDD|131987 TIGR02941, Sigma_B, RNA polymerase sigma-B factor. This sigma factor is restricted to certain lineages of the order Bacillales including Staphylococcus, Listeria and Bacillus. Length = 255
Score = 57.6 bits (139), Expect = 4e-09
Identities = 58/270 (21%), Positives = 120/270 (44%), Gaps = 36/270 (13%)
Query: 29 LEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEVVSEGNIGLMQ 88
L K++ ++++ + A +LV + LV IA Y G ++V G +GL+
Sbjct: 10 LTKEDVIQWIAEFQQNQNGEAQEKLVDHYQNLVYSIAYKYSKGGPMHEDLVQVGMLGLLG 69
Query: 89 AVKKFDPERGFRLATYSMWWIKAAMQEYIL-RSWSLVKIGTTANQKRLFFNLRRLKGHLQ 147
A++++D G +++ I ++ Y+ ++WS+ +R+ ++K +
Sbjct: 70 AIRRYDYSIGNAFEPFAIPTIIGEIKRYLRDKTWSV------HVPRRIKELGPKIKKAID 123
Query: 148 AITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALI------NSSDKNSSQWQ 201
+TD+ + +++ IA L +SE EV+ + + +S AL SD ++
Sbjct: 124 ELTDHLQRSPKIIEIADHLGLSEEEVLEI---MEMGQSYRALSVDDVIEADSDGSTVARL 180
Query: 202 DWLVYDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSE 261
D + DG +Q RR +L + + +L+ RE+ I ENLS +
Sbjct: 181 DSVGEVEDGYDQT--------ERRMVLEKILPILSEREKSIIHC-------TFEENLSQK 225
Query: 262 -----FEVSRERVRQIEARAFKKVQESIQK 286
+S+ V +++ +A K++E+
Sbjct: 226 ETGERLGISQMHVSRLQRQAISKLKEAAFL 255