RPSBLAST alignment for GI: 254780611 and conserved domain: PRK05657

>gnl|CDD|180185 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated. Length = 325
 Score =  125 bits (315), Expect = 2e-29
 Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 49/289 (16%)

Query: 19  YIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEV 78
           Y++EI   P+L  +EE   A+R    GD +A  R++ S+LRLVVKIA  Y   GL + ++
Sbjct: 58  YLNEIGYSPLLTAEEEVYFARRALR-GDFAARQRMIESNLRLVVKIAKRYLNRGLALLDL 116

Query: 79  VSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFN 138
           + EGN+GL++AV+KFDPERGFR +TY+ WWI+  ++  I+            NQ R    
Sbjct: 117 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM------------NQTR---T 161

Query: 139 LR-------------RLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDE- 184
           +R             R    L+   D+    E+   IA+ L+    +V  M   LA +E 
Sbjct: 162 IRLPVHVVKELNVYLRAARELEHKLDHEPSAEE---IAELLDKPVDDVSRM---LALNER 215

Query: 185 --SLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNR-RNMLTRSMSVLNPRERR 241
             SL+  +   D   S   D L  + +   +   + ++ K      L      LN ++R 
Sbjct: 216 ITSLDTPL-GGDPEKS-LLDILADEQENGPEDTTQDDDMKQSIVKWLFE----LNDKQRE 269

Query: 242 IFEARRLQEN---PVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287
           +   RR         TLE+++ E  ++RERVRQI+  A ++++E +Q Q
Sbjct: 270 VLA-RRFGLLGYEAATLEDVAREIGLTRERVRQIQVEALRRLREILQTQ 317