RPSBLAST alignment for GI: 254780611 and conserved domain: PRK05657
>gnl|CDD|180185 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated. Length = 325
Score = 125 bits (315), Expect = 2e-29
Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 49/289 (16%)
Query: 19 YIHEIRKIPMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLPISEV 78
Y++EI P+L +EE A+R GD +A R++ S+LRLVVKIA Y GL + ++
Sbjct: 58 YLNEIGYSPLLTAEEEVYFARRALR-GDFAARQRMIESNLRLVVKIAKRYLNRGLALLDL 116
Query: 79 VSEGNIGLMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFN 138
+ EGN+GL++AV+KFDPERGFR +TY+ WWI+ ++ I+ NQ R
Sbjct: 117 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM------------NQTR---T 161
Query: 139 LR-------------RLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDE- 184
+R R L+ D+ E+ IA+ L+ +V M LA +E
Sbjct: 162 IRLPVHVVKELNVYLRAARELEHKLDHEPSAEE---IAELLDKPVDDVSRM---LALNER 215
Query: 185 --SLNALINSSDKNSSQWQDWLVYDHDGQEQVLIEKEERKNR-RNMLTRSMSVLNPRERR 241
SL+ + D S D L + + + + ++ K L LN ++R
Sbjct: 216 ITSLDTPL-GGDPEKS-LLDILADEQENGPEDTTQDDDMKQSIVKWLFE----LNDKQRE 269
Query: 242 IFEARRLQEN---PVTLENLSSEFEVSRERVRQIEARAFKKVQESIQKQ 287
+ RR TLE+++ E ++RERVRQI+ A ++++E +Q Q
Sbjct: 270 VLA-RRFGLLGYEAATLEDVAREIGLTRERVRQIQVEALRRLREILQTQ 317