RPSBLAST alignment for GI: 254780611 and conserved domain: PRK06986

>gnl|CDD|180784 PRK06986, fliA, flagellar biosynthesis sigma factor; Validated. Length = 236
 Score = 38.7 bits (91), Expect = 0.002
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 40/251 (15%)

Query: 51  HRLVTSHLRLVVKIAMGYRGYGLPIS----EVVSEGNIGLMQAVKKFDPERGFRLATYSM 106
             LV  +  LV +IA+  +   LP S    +++  G IGL++A +++D E+G    TY+ 
Sbjct: 11  DELVEQYAPLVKRIALRLKAR-LPASVDLDDLIQAGMIGLLEAARRYDGEQGASFETYAG 69

Query: 107 WWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGHLQ-AITDNNLKPEQVVAIAKK 165
             I+ AM +  LRS   V      N + +   +R+L+  L    TD          +A+K
Sbjct: 70  QRIRGAMLDE-LRSLDWVPRSVRRNAREVAQAIRQLEQELGREPTDTE--------VAEK 120

Query: 166 LNVSESEVISMNCRLAGDESLNALINSS----DKNSSQWQDWLVYDHDGQEQVLIEKEER 221
           L +S  E   M         L     S     D+   +  D ++   D Q++  +++ E 
Sbjct: 121 LGLSLEEYREM---------LLDTNISQLFSIDELRGEHGDSILVTEDHQDEDPLQQLED 171

Query: 222 KNRRNMLTRSMSVLNPRERRI-----FEARRLQENPVTLENLSSEFEVSRERVRQIEARA 276
           +  R  L  ++  L  RE+ +      E   L+E    L        VS  RV QI ++A
Sbjct: 172 EELREALVEAIESLPEREQLVLSLYYQEELNLKEIGAVL-------GVSESRVSQIHSQA 224

Query: 277 FKKVQESIQKQ 287
            K+++  + + 
Sbjct: 225 IKRLRARLGEW 235