RPSBLAST alignment for GI: 254780611 and conserved domain: COG1191

>gnl|CDD|31384 COG1191, FliA, DNA-directed RNA polymerase specialized sigma subunit [Transcription]. Length = 247

 Score = 86.5 bits (214), Expect = 7e-18
 Identities = 59/262 (22%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 27  PMLEKQEEYVLAKRYREHGDLSAAHRLVTSHLRLVVKIAMGYRGYGLP-ISEVVSEGNIG 85
             L K+EE  L + Y E  +   A RL+  +L LV  IA  +   G     +++  G IG
Sbjct: 4   QPLSKEEEEKLLEYYAEGDE--EARRLIERYLPLVKSIARKFENRGPSEYDDLIQIGMIG 61

Query: 86  LMQAVKKFDPERGFRLATYSMWWIKAAMQEYILRSWSLVKIGTTANQKRLFFNLRRLKGH 145
           L++A++++DP +G + +TY++  I+  + +Y LR    VK+      + L    RR++  
Sbjct: 62  LIKAIERYDPSKGTKFSTYAVRRIRGEILDY-LRKNDSVKV-----PRSLRELGRRIEEA 115

Query: 146 LQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNALINSSDKNSSQWQDWLV 205
           +  +     +      IA++L + + E I     + G + L+   +    +     D   
Sbjct: 116 IDELEQELGREPTDEEIAEELGIDKEEYIEALLAINGSQLLSLDEDVLKDDDDDVDD--- 172

Query: 206 YDHDGQEQVLIEKEERKNRRNMLTRSMSVLNPRERRIFEARRLQENPVTLENLSSEFEVS 265
                Q +   +  E++    +L  ++  L  RE+ +   R  +E  +T + ++    +S
Sbjct: 173 -----QIENPDDGVEKEELLEILKEAIEPLPEREKLVLVLRYKEE--LTQKEIAEVLGIS 225

Query: 266 RERVRQIEARAFKKVQESIQKQ 287
             RV ++  +A KK+++ + K 
Sbjct: 226 ESRVSRLHKKAIKKLRKELNKA 247