BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(503 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040289|gb|ACT57085.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA
Sbjct: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS
Sbjct: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF
Sbjct: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG
Sbjct: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF
Sbjct: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK
Sbjct: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
Query: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT
Sbjct: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
Query: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI
Sbjct: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
Query: 481 DKGKKGADIFKSAIMQWENRSNN 503
DKGKKGADIFKSAIMQWENRSNN
Sbjct: 481 DKGKKGADIFKSAIMQWENRSNN 503
>gi|315121812|ref|YP_004062301.1| putative transmembrane protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495214|gb|ADR51813.1| putative transmembrane protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 500
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/504 (58%), Positives = 382/504 (75%), Gaps = 8/504 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+LVIQRAVDNL ENTPE RSHIYE AR +V+R+LESM PR P++ILERQ +KLE+A
Sbjct: 1 MVDFVLVIQRAVDNLSENTPEMRSHIYERARVAVSRQLESMNPRTPRDILERQLSKLEKA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
ILQVE++N+K +D+ PKS V SK+N+FL RL SISSILR+ K K+ +I+S
Sbjct: 61 ILQVERKNKKFPRALDKDRVLLAPKSHVNSKKNVFLTSRLTSISSILRNRKRKRTVDIVS 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+G +T T+ P +LR+IL S N Q ++ + + +IE++K+RLRR KL F
Sbjct: 121 TKGNKKTTTH-RP----YQLRDILHLSSNVQQGSNAQILSMESIEYNKNRLRRDKLLRKF 175
Query: 181 SFPTG-SIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
S + SIF+ + +YF NK R +SFY+AL E+H FK VFL++ LGM +G+SYS ++K
Sbjct: 176 SVSSSRSIFFLLQSYFSNKIRVFISFYTALLEYHFFKQSVFLVVFLGMMMGLSYSFWQNK 235
Query: 240 GSITHFLRRESLDGGNVDKKNVFS-GIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNI 298
S +H L + L+ + +KK + + G RPKITRRLL +GSEVD+G + + +NTSN+
Sbjct: 236 VSFSHILENKILNRDSDNKKVLHALGSRPKITRRLLANGSEVDMGTAISSPINSSNTSNV 295
Query: 299 AFKNYI-GGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQ 357
FKN+I D+ + +L +K+ NP+ +GRVFIN+G G+SSI +G I WSLQ+EK+Q
Sbjct: 296 FFKNHIDSNDQAVSHILERKKSGTENPIDEDGRVFINQGSGRSSIFAGNIFWSLQKEKTQ 355
Query: 358 GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISM 417
GLKGLVIKGDIP I+NAFSAS+TLKCNADI+LS+TH+MEI FSFPKESQ+++VDLR+ISM
Sbjct: 356 GLKGLVIKGDIPTINNAFSASITLKCNADIALSVTHLMEITFSFPKESQNSIVDLRQISM 415
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKIL 477
RKT+NSPS+LIDSNIF ISKNSYLISLKG ED RNSKILEEYR+IDIPITY SGQKI
Sbjct: 416 RKTENSPSILIDSNIFRISKNSYLISLKGDAEDFLRNSKILEEYRWIDIPITYHSGQKIT 475
Query: 478 FTIDKGKKGADIFKSAIMQWENRS 501
TIDKGK G+D+FKSA+M W++ S
Sbjct: 476 LTIDKGKVGSDVFKSAVMDWKDHS 499
>gi|116253508|ref|YP_769346.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115258156|emb|CAK09257.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 851
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 133/256 (51%), Gaps = 34/256 (13%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGN---- 323
K T+RLL DG+EVD GP+T+P A ++A +N D G +
Sbjct: 594 KFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPASAQGDAAPADARTPNG 653
Query: 324 ---------PLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQ-GLKGLVIKGDIPM 370
P+ ++F+ + R GQSS + G ++WS+Q E Q G + ++G++ +
Sbjct: 654 PVASPPQTAPVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQDGRQEATVQGNVTV 713
Query: 371 IDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS------ 423
+ SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 714 PERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALI 773
Query: 424 --PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTID 481
P+ + D + +I+ N Y + K N ++ +IDIPITYR+G++ L T++
Sbjct: 774 AVPAKITD-DFHMIALNDYPDARKA-------NLDLMSTRNWIDIPITYRNGRRALLTME 825
Query: 482 KGKKGADIFKSAIMQW 497
KG G D F +AI +W
Sbjct: 826 KGGTGTDAFNTAIKEW 841
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ +++
Sbjct: 61 IREVEGEHSEAM 72
>gi|241206035|ref|YP_002977131.1| hypothetical protein Rleg_3345 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859925|gb|ACS57592.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 841
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 36/257 (14%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPL-- 325
K T+RLL DG+EVD GP+T+P A ++A +N D G P
Sbjct: 584 KFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPASAQGDA-APAATPTPN 642
Query: 326 -----------IGEG-RVFINKGR-GQSS--ILSGKILWSLQQEKSQG-LKGLVIKGDIP 369
+G ++F+ + R GQSS + G ++WS+Q E QG + ++G++
Sbjct: 643 GAAASPPQAAPVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQGGRQEATVQGNVT 702
Query: 370 MIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS----- 423
+ + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 703 VPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDAL 762
Query: 424 ---PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
P+ + D + +I+ N Y + K N ++ +IDIPITYR+G++ L T+
Sbjct: 763 IAVPAKITD-DFHMIALNDYPDARKA-------NLDLMSTRNWIDIPITYRNGRRALLTM 814
Query: 481 DKGKKGADIFKSAIMQW 497
+KG G D F +AI +W
Sbjct: 815 EKGGTGTDAFNTAIKEW 831
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 7/93 (7%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKEN 93
I +VE ++ +++ D P ++VT+ E+
Sbjct: 61 IREVEGEHSEAMPL-------DEPVAAVTASES 86
>gi|190893169|ref|YP_001979711.1| hypothetical protein RHECIAT_CH0003587 [Rhizobium etli CIAT 652]
gi|190698448|gb|ACE92533.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 837
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 133/248 (53%), Gaps = 18/248 (7%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG---------GDENSTFVL---- 314
K T+RLL DG+EVD GP+ +P A ++A +N GD L
Sbjct: 580 KFTQRLLSDGTEVDSGPAAVPGTPTAEGKSVAEQNVAAADTPAASAQGDAARPETLTPNG 639
Query: 315 GKKEIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQG-LKGLVIKGDIPM 370
++ P+ ++F+ + R GQSS + G ++WS+Q E QG + ++G+I +
Sbjct: 640 PAASPQQTAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQGNITV 699
Query: 371 IDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLID 429
+ SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+ +
Sbjct: 700 PERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALI 759
Query: 430 SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADI 489
+ I+ + ++I+L + N ++ +IDIPITYR+G++ L T+DKG G D
Sbjct: 760 AVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRNGRRALLTMDKGGTGTDA 819
Query: 490 FKSAIMQW 497
F +AI +W
Sbjct: 820 FNTAIKEW 827
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEAL 72
>gi|327190965|gb|EGE58019.1| hypothetical protein RHECNPAF_3500073 [Rhizobium etli CNPAF512]
Length = 837
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 18/248 (7%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG---------GDENSTFVL---- 314
K T+RLL DG+EVD GP+ +P A ++A +N GD L
Sbjct: 580 KFTQRLLSDGTEVDSGPAAVPGTPTAEGKSVAEQNVAAADAPAASAQGDAARPETLTPNG 639
Query: 315 GKKEIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQG-LKGLVIKGDIPM 370
++ P+ ++F+ + R GQSS + G ++WS+Q E QG + ++G+I +
Sbjct: 640 PAASPQQTAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQGNITV 699
Query: 371 IDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLID 429
+ SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+ +
Sbjct: 700 PERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALI 759
Query: 430 SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADI 489
+ I+ + ++I+L + N ++ +IDIP+TYR+G++ L T+DKG G D
Sbjct: 760 AVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPVTYRNGRRALLTMDKGGTGTDA 819
Query: 490 FKSAIMQW 497
F +AI +W
Sbjct: 820 FNTAIKEW 827
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEAL 72
>gi|209550664|ref|YP_002282581.1| hypothetical protein Rleg2_3088 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536420|gb|ACI56355.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 836
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 136/257 (52%), Gaps = 35/257 (13%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG----------GD---ENSTFVL 314
K T+RLL DG+EVD GP+T+P A ++A +N GD +
Sbjct: 578 KFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPAATAQGDVAPAETPTPN 637
Query: 315 GKKEIEEGNPLIGEG-RVFINKGR-GQSS--ILSGKILWSLQQEKSQ-GLKGLVIKGDIP 369
G + L+G ++F+ + R GQSS + G ++WS+Q E Q G + ++G++
Sbjct: 638 GPAASPQQTALVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQDGRQEATVQGNVT 697
Query: 370 MIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS----- 423
+ + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 698 VPERNLSALVTFKRNSDPSLPASHLVEIVFSLPPNFEGGSIDSVQRISMKRTEQDRGDAL 757
Query: 424 ---PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
P+ + D + +I+ N Y + K N ++ +IDIP+TYR+G++ L T+
Sbjct: 758 IAVPAKITD-DFHMIALNDYPDARKA-------NLDLMSTRSWIDIPVTYRNGRRALLTM 809
Query: 481 DKGKKGADIFKSAIMQW 497
+KG G D F +AI +W
Sbjct: 810 EKGNTGTDAFNTAIKEW 826
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHAEAL 72
>gi|86358941|ref|YP_470833.1| hypothetical protein RHE_CH03343 [Rhizobium etli CFN 42]
gi|86283043|gb|ABC92106.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 828
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 34/256 (13%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG---------GDENSTFVL---- 314
K T+RLL DG+EVD GP+T+P A ++A +N GD L
Sbjct: 571 KFTQRLLSDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPAASAQGDAAPPETLTPNG 630
Query: 315 GKKEIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQ-GLKGLVIKGDIPM 370
++ P+ ++F+ + R GQSS + G ++WS+Q E Q G + I+G++ +
Sbjct: 631 PAASPQQAAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQNGRQEATIQGNVTV 690
Query: 371 IDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS------ 423
+ SA +T K N+D SL +H++EI+FS P + ++ ++RISM++T+
Sbjct: 691 PERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIESVQRISMKRTEQDRGDALI 750
Query: 424 --PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTID 481
P+ + D + +I+ N Y + K N +L +IDIPITYR+G++ L T++
Sbjct: 751 AVPAKITD-DFHMIALNDYPDARKA-------NLDLLSTRNWIDIPITYRNGRRALLTME 802
Query: 482 KGKKGADIFKSAIMQW 497
KG G + F +AI +W
Sbjct: 803 KGGTGTNAFNTAIKEW 818
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEAEHSEAL 72
>gi|15966480|ref|NP_386833.1| hypothetical protein SMc00644 [Sinorhizobium meliloti 1021]
gi|307300483|ref|ZP_07580263.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307318348|ref|ZP_07597783.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15075751|emb|CAC47306.1| Hypothetical protein SMc00644 [Sinorhizobium meliloti 1021]
gi|306896030|gb|EFN26781.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306904649|gb|EFN35233.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 753
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 37/260 (14%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVAD-----------FANTSNIAFKNYIGG------DENS 310
K T+RLL DG+E+D GP+ VA+ A T + N G D+ +
Sbjct: 490 KFTQRLLADGTEMDEGPA---VANETAASQEGKSVAARTHAVEPPNANAGVQQAAADQTA 546
Query: 311 TFVLGKKEIEEGNPLI----GEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQG--LKG 361
+ G+ E P + GE ++F+ + R GQSS + G + WS+++E G
Sbjct: 547 SPGPGQAASEAAQPEVSVADGE-KMFLYEERLGQSSPTAIPGTVAWSIKEESPGGDAKPE 605
Query: 362 LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKT 420
I+ I + D +A MT+K NAD SL +HV+E +FS P+ + +D ++R+SM++T
Sbjct: 606 PAIQAQITVPDRGLTALMTIKRNADPSLPASHVIEFVFSLPESFEGGAIDGVQRVSMKRT 665
Query: 421 DNS---PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKIL 477
+ P + + + I + + ++I+L E N+++L +IDIPITYR+G++ L
Sbjct: 666 EQDRGDPLIAVPAKI---TDDFHMIALNDFAEAVSNNTELLRSRSWIDIPITYRNGRRAL 722
Query: 478 FTIDKGKKGADIFKSAIMQW 497
T++KG+ GAD F A+ W
Sbjct: 723 LTLEKGQGGADAFNKALQAW 742
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENT E R +YE AR +V R+LESM PR +++ RQ NKLEQA
Sbjct: 1 MADFVAVIRRTVDGLSENTLEMRGRVYEKARGAVRRQLESMNPRPSDDMINRQLNKLEQA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 ISEVESEHAEAL 72
>gi|150397813|ref|YP_001328280.1| hypothetical protein Smed_2615 [Sinorhizobium medicae WSM419]
gi|150029328|gb|ABR61445.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 766
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 138/259 (53%), Gaps = 35/259 (13%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTS----NIAFKNYIGGDENSTFVLGKKEI-EEG 322
K T+RLL +G+E D GP+ VA+ S ++A + + G EN+ L + E
Sbjct: 503 KFTQRLLANGTERDEGPA---VANDTAASQEGKSVAARTHAGEPENTDAGLQQAAAGETA 559
Query: 323 NPLIGEG---------------RVFINKGR-GQSS--ILSGKILWSLQQEKSQG--LKGL 362
+P G+ ++F+ + R GQSS + G + WS+++E G
Sbjct: 560 SPAAGQAPSETAQPEVSVADGEKMFLYEERLGQSSPTAIPGAVAWSVKEESPGGDAKPEP 619
Query: 363 VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTD 421
I+ I + D +A +T+K NAD SL +HV+E +FS P+ + +D ++R+SM++T+
Sbjct: 620 AIQAQITVPDRGLTALLTIKRNADPSLPASHVIEFVFSLPENFEGGAIDGVQRVSMKRTE 679
Query: 422 NS---PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILF 478
P + + + I + + ++I+L E N+++L +IDIPITYR+G++ L
Sbjct: 680 QDRGDPLIAVPAKI---TDDFHMIALNDFAEAVSNNTELLRSRSWIDIPITYRNGRRALL 736
Query: 479 TIDKGKKGADIFKSAIMQW 497
T++KG+ GA+ F A+ W
Sbjct: 737 TLEKGQSGAEAFNKALQAW 755
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENTPE R +YE AR +V R+LESM PR +++ RQ NKLEQA
Sbjct: 1 MADFVAVIRRTVDGLSENTPEMRGRVYEKARGAVRRQLESMNPRPSDDMIGRQLNKLEQA 60
Query: 61 ILQVEKQNQKSL 72
I +VE + ++L
Sbjct: 61 ISEVEGEYAEAL 72
>gi|163758774|ref|ZP_02165861.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
gi|162284064|gb|EDQ34348.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
Length = 531
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 21/248 (8%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFA--NTSNIAFKNYIGGDE--------NSTFVLGKK 317
K T+RL DG+E D GP+ P D S + DE + +
Sbjct: 282 KFTQRLNADGTETDAGPAPGPATDAPVEGRSVAGLTDTTPADEAIAEESTAEAEVTTEEA 341
Query: 318 EIEEGNPL-IGEGRVFINKGRGQSS--ILSGKILWSLQQEKS-QGLKGLVIKGDIPMIDN 373
+ + +PL + + + + GQ S + G ++W+L E S +G VI+G+I D
Sbjct: 342 AVPQSDPLGVSQKMILYEERLGQQSLEVKPGTVVWTLVSEPSSEGPDSPVIRGEINNPDT 401
Query: 374 AFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTD---NSPSVLID 429
SA +T+K N D SL +H++EI+F+ P+ +D L+RIS ++T+ SP + +
Sbjct: 402 GLSALLTIKKNNDPSLPASHLVEIVFAVPEGFSGGSIDQLQRISFKQTEADQGSPLIAVP 461
Query: 430 SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADI 489
+ I +++ Y+++L E N+ ++ + +IDIP+ Y +G++ L T++KG G ++
Sbjct: 462 AKI---TQDFYMVALNDLPEAAEANTGLMRQRSWIDIPVVYANGRQALITLEKGTTGTEV 518
Query: 490 FKSAIMQW 497
F A+ W
Sbjct: 519 FNQALDAW 526
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 51/72 (70%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVDNL ENTPE R+ +Y+ AR ++ R+LE++ P E++ Q +KL A
Sbjct: 1 MADFVAVIRKAVDNLSENTPENRAKVYDKARAAIRRQLEAINPPPSDEVMASQLDKLGAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IDEVESEHAEAL 72
>gi|222149602|ref|YP_002550559.1| hypothetical protein Avi_3542 [Agrobacterium vitis S4]
gi|221736584|gb|ACM37547.1| conserved hypothetical Protein [Agrobacterium vitis S4]
Length = 715
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 18/251 (7%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T++L+ DG+EVD G S A+ ++A +N GG + V G
Sbjct: 464 KFTQKLMPDGTEVDEGASNA-AANSGEGRSVAQQN--GGANPAAPVSGGAASAPATTTPV 520
Query: 328 EGRVFINKGRGQSSIL-------------SGKILWSLQQEKSQ-GLKGLVIKGDIPMIDN 373
+G F GQ + L G I+W ++E G I+G + + +
Sbjct: 521 QGAPFTVPENGQKAYLYEERLGQTTPTTVQGYIVWEARRETGDSGKPEPEIQGKLTIPER 580
Query: 374 AFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSNI 432
+A +T K N D SL +H+MEI+FS P+ + +D ++R++M+ ++ I +
Sbjct: 581 GLTALITFKRNTDSSLPASHLMEIVFSVPQNFEGGGIDSVQRVAMKTSEQDRGDPIVAVP 640
Query: 433 FVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKS 492
I+ ++++I+ E RN +L +IDIP+TYR+G++ L T+DKG G IF S
Sbjct: 641 AKITDDTFMIAFNDFAEVVARNVDLLRSRDWIDIPVTYRNGRRALITLDKGVAGKPIFDS 700
Query: 493 AIMQWENRSNN 503
I +W NN
Sbjct: 701 VIKEWAALGNN 711
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+RAVD L NTPE R +YE AR +V R+L++M P+ +++L RQ +KL+ A
Sbjct: 1 MADFVAVIRRAVDGLSNNTPEMRVKVYEKARGAVMRQLDNMTPKPSEDMLRRQLDKLDAA 60
Query: 61 ILQVEKQNQKSLHTSKQD 78
I +VE ++L ++D
Sbjct: 61 IAEVEADYAEALPAVEED 78
>gi|218508086|ref|ZP_03505964.1| hypothetical protein RetlB5_11022 [Rhizobium etli Brasil 5]
Length = 182
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 338 GQSS--ILSGKILWSLQQEKSQGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHV 394
GQSS + G ++WS+Q E QG + ++G+I + + SA +T K N+D SL +H+
Sbjct: 9 GQSSPTAIEGSVVWSVQHEAGQGGRQEATVQGNITVPERNLSALVTFKRNSDPSLPASHL 68
Query: 395 MEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFR 453
+EI+FS P + +D ++RISM++T+ + + I+ + ++I+L +
Sbjct: 69 VEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKA 128
Query: 454 NSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
N ++ +IDIPITYR+G++ L T+DKG G D F +AI +W
Sbjct: 129 NLDLMSTRNWIDIPITYRNGRRALLTMDKGGTGTDAFNTAIKEW 172
>gi|227823296|ref|YP_002827268.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
gi|227342297|gb|ACP26515.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
Length = 787
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 49/265 (18%)
Query: 268 KITRRLLEDGSEVDVGP-------------STIPVADFANTSN-------------IAFK 301
K T+RLL DGSE D GP S P + A +
Sbjct: 525 KFTQRLLADGSERDEGPAGANGTEIAQEGKSVAPQTEAAQPQSDAAGSQQAAAQTAQPPA 584
Query: 302 NYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQG 358
N GG + + E ++F+ + R GQSS + G WS+++E G
Sbjct: 585 NQDGGAPQTEVSIADGE-----------KMFLYEERLGQSSPTAVPGAAAWSIKEESPGG 633
Query: 359 --LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRI 415
I+ I + D +A MT+K N D SL +HV+E +FS P+ + ++ ++R+
Sbjct: 634 DAKPEPAIQAQITVPDRGLTALMTIKRNVDPSLPASHVIEFVFSLPENFEGGAIEGVQRV 693
Query: 416 SMRKTDNS---PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRS 472
SM++T+ P + + + I + + ++I+L E N+++L +IDIPITYR+
Sbjct: 694 SMKRTEQDRGDPLIAVPAKI---TDDFHMIALNDFAEAVGSNTELLRSRSWIDIPITYRN 750
Query: 473 GQKILFTIDKGKKGADIFKSAIMQW 497
G++ L T++KG G + F A+ W
Sbjct: 751 GRRALLTLEKGASGTEAFSKAMQAW 775
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 52/72 (72%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENTPE R +YE AR++V R+LE+M PR +++ RQ NKLE A
Sbjct: 6 MADFVAVIRRTVDGLSENTPEMRGRVYEKARSAVRRQLENMTPRPSDDMINRQLNKLELA 65
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 66 ITEVESEHAEAL 77
>gi|319403702|emb|CBI77287.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 477
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 128/523 (24%), Positives = 236/523 (45%), Gaps = 71/523 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M+DF+ +++ ++ + TP R IYEHA ++ + +MK LPKE +E Q + L+ A
Sbjct: 1 MIDFVGILKNKINAQKDITPRLRKQIYEHATKTLEHTIVNMK--LPKEAIEAQRSALQSA 58
Query: 61 ILQVEKQ------NQKSL-----HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS 109
I VE++ Q SL T + E + +SS++S EN +S+L +
Sbjct: 59 ITIVEEEYLAVEKEQLSLIIGWNCTDRNSGEKN-EQSSISSLENN---------ASVLAT 108
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
K ++L+ V + ++ L ++ +F+ HE D ++ K
Sbjct: 109 EKQQQLSIPHLVDNEICDEASVMSDIPDAELVKLDAFNA---HEKDQNIK--------KD 157
Query: 170 RLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAI 229
L I + + + S+L +H L F I++ +
Sbjct: 158 MSNNALLVSTSQVDNAHIVSHIFSQALRRAN-----RSSLQKHILVSVVSFFTIIILFS- 211
Query: 230 GVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGP---ST 286
G+ + G+ S L+ +++ N +K + K+T+RLLEDGSEVDVGP +
Sbjct: 212 GIFFVSGRIFISGNKNLQEKNIQTSNALQKA--TQTNRKLTQRLLEDGSEVDVGPAERTE 269
Query: 287 IPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGK 346
P A+ TS + N + VL + + + G+ +G
Sbjct: 270 SPSAE--GTSTVVATNLKSFGQVGEVVLYQMATKH------------DSGKAT----TGS 311
Query: 347 ILWSLQQEKS-QGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP-K 403
+ WSL E S +G++G L I+GDI + D S +TL+ N D +L ++++++F K
Sbjct: 312 VSWSLITEDSVKGIQGELAIRGDITIPDEGLSLRLTLRRNTDEALHAAYIIDLIFIISDK 371
Query: 404 ESQDAVVDLRRISMRKTDNSPS-VLIDSNIFVISKNSYLISLKGSEEDPF--RNSKILEE 460
S A+ +++ ++ +++ S S L+ + I + ++ +L G+ PF RN +++ +
Sbjct: 372 FSGQAINNIKSLTFKESGKSISQTLVGTVTAKIDNDFFVFALVGNH--PFLDRNLQLIRD 429
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSNN 503
+ + I+ ++G+ KG G IFK I +W + NN
Sbjct: 430 LDWFHLVISDKNGRMHELNFAKGPAGQAIFKEVIGKWLMKENN 472
>gi|319408109|emb|CBI81762.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 481
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 133/518 (25%), Positives = 239/518 (46%), Gaps = 69/518 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFI ++++ +D TP+ R IY+ A + + ++ ++PK++ + Q L+ A
Sbjct: 1 MVDFIGILKKKIDAQNNITPQLRERIYKQAFEILEHKF--LEIKMPKKVADAQRQALQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I+ +E++ T++++ S + +T K+N E +SI S + A +++
Sbjct: 59 IVAIEEE----YLTAEKELLSSVMGWDLTGKDNNN-ENVQKSILS-----QSGDTAAVVT 108
Query: 121 VQGK-----SRTNTNLSPKNFSCRLREILSFSVNTQ-HEYDSSVSPVAAIEHD---KSRL 171
+ K SR + +P N S I S NT+ + ++S++P ++ H K+
Sbjct: 109 EEKKQQPPVSRRKSKKTPDNLS-----IESKMSNTEPTDMNTSLAPCSSKVHSNIKKNTR 163
Query: 172 RRGKLAGIFSFPTGSIFWSV---HNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMA 228
+ L S IF N K R L+ + + VFLI+L+G
Sbjct: 164 KNVALQTDTSHVVSHIFAQALRRANRSIVKKRILIG---------IVIFIVFLILLIG-- 212
Query: 229 IGVSYSIGKSK-GSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTI 287
++ +G+ S + ++ ++ N +K K+T+RLLEDGSEVD G +I
Sbjct: 213 ---AFFVGEYMFTSYNNQIQEVNIQASNGLQKE--GQANQKLTQRLLEDGSEVDAG--SI 265
Query: 288 PVADFANTSNIAFKNYIGGDENSTFVLGK-KEIEEGNPLIGEGRVFINKGRGQSS-ILSG 345
D ++ +E ST V G K IE +P GE + S ++ G
Sbjct: 266 ERTDKKT-------EFLSEEETSTVVTGNSKTIE--HP--GEAIFYKTHADHDSEKVVMG 314
Query: 346 KILWSLQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF-SFP 402
+ WSL +E S + L I+GDI + +TL+ N D S ++M+++F +
Sbjct: 315 NVWWSLIKEASVKNAPEELAIRGDINIPSEGLLLQLTLRRNVDPSFPTAYIMDLVFMTTD 374
Query: 403 KESQDAVVDLRRISMRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPF--RNSKILE 459
K S A+ D++ ++ + + S ++ ++I I + +L +L S PF +N +I+
Sbjct: 375 KFSGQAIHDIKELTFKASKQSVGQPLERASIAKIDDDFFLFAL--SNNHPFLDQNLQIIR 432
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
E +I + I+ ++G T KG G IF I QW
Sbjct: 433 ELDWIHLVISDKNGHMSELTFAKGPTGKAIFNEVIEQW 470
>gi|121602864|ref|YP_988609.1| hypothetical protein BARBAKC583_0286 [Bartonella bacilliformis
KC583]
gi|120615041|gb|ABM45642.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 499
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 123/245 (50%), Gaps = 29/245 (11%)
Query: 267 PKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLI 326
PK+T+RLLEDGSE++VGP A G++ ++ V+ + N +
Sbjct: 247 PKLTQRLLEDGSEINVGPVEEEEAQ--------------GEKGTSTVVAN----DINSMK 288
Query: 327 GEGRVFINKGRGQ---SSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTL 381
G V + R + +G LWSL +E S + L I+GDI + D S +TL
Sbjct: 289 HAGEVVFYQSRTDYDAEKVATGSALWSLVKETSVNGQSEELAIRGDIKIPDEGLSLRLTL 348
Query: 382 KCNADISLSITHVMEIMF-SFPKESQDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNS 439
+ N D+SL ++M+++F + K S A+ D++ ++ + ++ S L + + I +
Sbjct: 349 RRNTDLSLPAAYIMDLIFITSDKFSGQAISDIKTLTFKASEQSVGQALTRTVVAKIDDDF 408
Query: 440 YLISLKGSEEDPF--RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+L++L G PF RN +++ E +I + + ++G+ T KG+ G IF I QW
Sbjct: 409 FLVALSGHY--PFLNRNLQLIRELDWIRLVMNDKNGRVNELTFAKGETGEAIFNQVIGQW 466
Query: 498 ENRSN 502
++N
Sbjct: 467 LAQTN 471
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++ +D TP+ R +YE A ++ +L ++ +P+ +++ Q L+ A
Sbjct: 1 MVDFVGILKKTIDAQNNVTPQVRKQVYERAIETLEHKL--VEANMPETVIDAQRQALQSA 58
Query: 61 ILQVEKQ 67
I VE++
Sbjct: 59 ISVVEEE 65
>gi|222086842|ref|YP_002545376.1| hypothetical protein Arad_3514 [Agrobacterium radiobacter K84]
gi|221724290|gb|ACM27446.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 718
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 99/180 (55%), Gaps = 5/180 (2%)
Query: 324 PLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEK-SQGLKGLVIKGDIPMIDNAFSASM 379
P+ +VF+ + R GQ+S G + WSLQ+ K + G ++G I + +A++
Sbjct: 529 PVADGQKVFLYEERLGQTSPTAFEGTVTWSLQEGKGADGRPEPSVQGLINVPQRGLTATI 588
Query: 380 TLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSNIFVISKN 438
T+ N D SL +H++E+ F P + +D ++RI+++ T+ + + ++ +
Sbjct: 589 TVSRNTDSSLPASHLVELAFQVPPNFEGGAIDNVQRIALKSTEQDRGDALIAVPAKVTDD 648
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
Y+++L + N +L+ +IDIP+ YR+G++ L T++KG G+D F AI +W+
Sbjct: 649 VYMVALNDFPDARKTNLDLLKTRNWIDIPVVYRNGRRALLTMEKGPTGSDAFNKAIAEWQ 708
>gi|319898404|ref|YP_004158497.1| hypothetical protein BARCL_0226 [Bartonella clarridgeiae 73]
gi|319402368|emb|CBI75907.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 474
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 235/519 (45%), Gaps = 74/519 (14%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ +++ ++ + TP+ R +YE A ++ ++ +MK LPKE +E Q L+ A
Sbjct: 1 MVDFVGILKNTINAQKDATPKLRERVYERATETLEHKIVNMK--LPKEAIEAQRRALQSA 58
Query: 61 I-------LQVEKQNQKSL----HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS 109
I L VEK+ S+ +T K++ E + ++S+ S EN S ++
Sbjct: 59 ITTVEEEYLAVEKELLSSIMGWNYTEKRNDEKN-AQNSLLSLEN--------DGSVLVTE 109
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
+ ++L+ SV + N ++ +L I S ++ +E ++ ++S
Sbjct: 110 KQQQQLSVTNSVDNEIFDNASVISDMPDAKLVNIDSLNI---YEKGQNI--------EES 158
Query: 170 RLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVF--LIILLGM 227
+ LA I + + + S+L + L VF LIIL
Sbjct: 159 MSKNALLASNLQADNSHIVSHIFSQALRRAN-----RSSLQKRILIGVIVFFSLIILFS- 212
Query: 228 AIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPS-- 285
G + G+ S L+ +++ N +K + K+T+RLLEDGSEVDVGP+
Sbjct: 213 --GTFFVSGRIFISGDQNLQEKNIQISNTLQK--AAQTNRKLTQRLLEDGSEVDVGPAEK 268
Query: 286 TIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSS-ILS 344
T+ ++ ++ +A + G +GE ++ + + + +
Sbjct: 269 TVSSSEEGTSTVVATNLKLFGQ------------------VGEAVLYQMRTKHDAEKVTK 310
Query: 345 GKILWSLQQEKS-QGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF-SF 401
G WSL +E S +G G L ++GDI + S +TL+ N D SL ++++++F +
Sbjct: 311 GSASWSLIEEDSVKGASGELALRGDITIPSEGLSLRLTLRRNTDESLCAAYIIDLIFITS 370
Query: 402 PKESQDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNSYLISLKGSEEDPF--RNSKIL 458
K S + +++ ++ + + S L + I + +L +L G+ PF RN +++
Sbjct: 371 DKFSGQTINNIKSLTFKANEKSIGQTLFGTVTAKIDNDFFLFALTGNH--PFLDRNLQLI 428
Query: 459 EEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ ++ + ++ ++G+ T KG G IF I QW
Sbjct: 429 RDLDWLRLVMSDKNGRVHELTFAKGPAGEAIFNKVIGQW 467
>gi|325293797|ref|YP_004279661.1| hypothetical protein AGROH133_08313 [Agrobacterium sp. H13-3]
gi|325061650|gb|ADY65341.1| hypothetical protein AGROH133_08313 [Agrobacterium sp. H13-3]
Length = 767
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 98/181 (54%), Gaps = 21/181 (11%)
Query: 330 RVFINK---GRGQSSILSGKILWSLQQE-KSQGLKGLVIKGDIPMIDNAFSASMTLKCNA 385
R+F+ + G+ + + G + WSLQQE ++G ++G I + SA +T K N
Sbjct: 586 RMFLYEEVLGQTVPTAIQGSVSWSLQQENDNEGRPSATVQGQITVPGRGLSALITFKRNT 645
Query: 386 DISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS--------PSVLIDSNIFVIS 436
D SL +H++EI+FS + +D ++RI+M+ T+ P+ + D + +I+
Sbjct: 646 DPSLPASHLIEIVFSVSPGFEGGAIDSVQRIAMKSTEQDRGNALIAVPAKITD-DFHMIA 704
Query: 437 KNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQ 496
N + ++K N ++L+ +IDIP++YR+G++ L T+ KG G F +A+ +
Sbjct: 705 LNDFPDAMK-------TNLELLKSRNWIDIPVSYRNGRRALLTLQKGNDGIAAFDTALRE 757
Query: 497 W 497
W
Sbjct: 758 W 758
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVD L NTPE R+ +Y+ AR++V R+LE+MKPR P+E+L RQ KL+ A
Sbjct: 1 MADFVAVIRKAVDGLANNTPENRAKVYDKARSAVVRQLENMKPRPPEELLRRQIAKLDAA 60
Query: 61 ILQVEKQNQKSLHTSKQD 78
I +V+ + ++L ++D
Sbjct: 61 IAEVDSEYAEALPALEED 78
>gi|218671440|ref|ZP_03521110.1| hypothetical protein RetlG_07163 [Rhizobium etli GR56]
Length = 400
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 18/219 (8%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG---------GD----ENSTFVL 314
K T+RLL DGSEVD GP+ +P A ++A +N GD E T
Sbjct: 182 KFTQRLLSDGSEVDSGPAAVPGTPTAEGKSVAEQNVAAADTPAASAQGDTARPETLTPNG 241
Query: 315 GKKEIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQEKSQGLKG-LVIKGDIPM 370
++ P+ ++F+ + R GQSS + G ++WS+Q E QG + ++G+I +
Sbjct: 242 SAASPQQAAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQGNITV 301
Query: 371 IDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLID 429
+ SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+ +
Sbjct: 302 PERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALI 361
Query: 430 SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPI 468
+ I+ + ++I+L + N ++ +IDIPI
Sbjct: 362 AVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPI 400
>gi|218680745|ref|ZP_03528642.1| putative transmembrane protein [Rhizobium etli CIAT 894]
Length = 111
Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSS 87
I +VE ++ ++L P+ S
Sbjct: 61 IREVEGEHSEALPLDASAAAVAAPEPS 87
>gi|15889717|ref|NP_355398.1| hypothetical protein Atu2446 [Agrobacterium tumefaciens str. C58]
gi|15157629|gb|AAK88183.1| conserved hypothetical Protein [Agrobacterium tumefaciens str. C58]
Length = 778
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 21/181 (11%)
Query: 330 RVFINK---GRGQSSILSGKILWSLQQE-KSQGLKGLVIKGDIPMIDNAFSASMTLKCNA 385
R+F+ + G+ + + G + WSLQQE ++G ++G I + SA +T K N
Sbjct: 596 RMFLYEEVLGQTVPTAIQGSVSWSLQQENDAEGKPSPTVQGQITVPGRGLSALITFKRNT 655
Query: 386 DISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS--------PSVLIDSNIFVIS 436
D SL +H++EI+FS + +D ++RI+M+ T+ P+ + D + +I+
Sbjct: 656 DPSLPASHLIEIVFSVSPGFEGGAIDSVQRIAMKSTEQDRGNALIAVPAKITD-DFHMIA 714
Query: 437 KNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQ 496
N + ++K N ++L+ +IDIP++YR+G++ L T+ KG G F A+ +
Sbjct: 715 LNDFPDAMK-------TNLELLKSRNWIDIPVSYRNGRRALLTLQKGNDGIAAFDKALSE 767
Query: 497 W 497
W
Sbjct: 768 W 768
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVD L NTPE R+ +Y+ AR++V R+LE+MKPR P+E+L RQ KL+ A
Sbjct: 3 MADFVAVIRKAVDGLANNTPENRAKVYDKARSAVVRQLENMKPRPPEELLRRQIAKLDAA 62
Query: 61 ILQVEKQNQKSLHTSKQD 78
I +V+ + ++L +D
Sbjct: 63 IAEVDSEYAEALPALTED 80
>gi|90418988|ref|ZP_01226899.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337068|gb|EAS50773.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 661
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 49/282 (17%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLI- 326
+ T+RLL DG+EVD GP+ + F +NIA + + + S EI E NP +
Sbjct: 381 QFTQRLLPDGTEVDEGPAEVAPNAFDEGTNIAAASPVETPDLSGSPTVASEIGE-NPEVV 439
Query: 327 -------------------------GEGRVFI------NKGRGQSSIL------------ 343
GE V G Q ++
Sbjct: 440 GAPAETPAETAAETPDAAPAEDAAAGETEVAAVDPSEDGVGVAQDAVFYQERTETVPGTQ 499
Query: 344 -SGKILWSLQQE-KSQGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
SG ++WS+ E ++G I+ + + D +MT++ NAD +L +HV+E++F+
Sbjct: 500 ESGDVVWSVVNESPTEGQPPEPAIRAEAEIPDENLKMTMTIRRNADPTLPASHVIELLFT 559
Query: 401 FPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P+ + +V +++R++++ ++ + + IS ++I+L E+ N +L+
Sbjct: 560 TPENFAGGSVANVQRLALKPSEQARGEPLIGVAGKISDGFFIIALNNLEQAMQNNMALLQ 619
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
++IDIPI Y SG++ L +I+KG G +FK AI W+ ++
Sbjct: 620 NEQWIDIPIAYASGRRALMSIEKGVPGDRVFKEAIEAWKAKT 661
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D V+++ +D LP TP+ R+ +YE AR ++ R++++ P L +E++ + + LE A
Sbjct: 1 MADLSGVLRKTIDGLPRATPQMRAKVYEKARAAIQRQIQAANPPLAEEVVAARQSALEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESD 82
I + E+ H Q E+D
Sbjct: 61 IARTEQ------HYLDQGAEAD 76
>gi|218661960|ref|ZP_03517890.1| hypothetical protein RetlI_21973 [Rhizobium etli IE4771]
Length = 94
Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIP 84
I +VE ++ ++L + + P
Sbjct: 61 IREVEGEHSEALSVGEASEAVAAP 84
>gi|49473930|ref|YP_031972.1| hypothetical protein BQ02810 [Bartonella quintana str. Toulouse]
gi|49239433|emb|CAF25782.1| hypothetical protein BQ02810 [Bartonella quintana str. Toulouse]
Length = 475
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 39/289 (13%)
Query: 220 FLIILLGMAIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFS---GIRPKITRRLLED 276
F+++++G+ Y IG L L GGNV ++ ++ K+T+RLLED
Sbjct: 201 FVMLIIGI-----YFIGVR----VFVLNDHQLSGGNVQASHLLPKAPAVKRKLTKRLLED 251
Query: 277 GSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGK-KEIEE-GNPLIGEGRVFIN 334
GSEVDVG + P AD +N I ST V + IE+ G + + R +
Sbjct: 252 GSEVDVGLN--PTADSSNEEGI-----------STVVTSNLQSIEQPGEAVFYQARTNYD 298
Query: 335 KGRGQSSILSGKILWSLQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSIT 392
+ + +G W+L +E S G + I+GDI + D S + L+ N D+S
Sbjct: 299 AEK----VATGNARWTLIKESSVKGGPEESAIQGDITIPDKGLSLRLILRRNTDLSFPAA 354
Query: 393 HVMEIMFSFP-KESQDAVVDLRRISMRKTDNSPSVLIDSNIFV-ISKNSYLISLKGSEED 450
++M+++F K S A+ +++ ++ + ++ S + + I + +L++L G+
Sbjct: 355 YIMDLIFILSDKFSGQAIRNVQAVTFKASEQSVGQALKRAVAAKIDDDFFLVALSGNH-- 412
Query: 451 PF--RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
PF RN +++ E ++ + +T ++G+ T KG G IF I QW
Sbjct: 413 PFLNRNLQLMRELDWMRLVLTDKNGRINELTFAKGPTGKSIFNEVIGQW 461
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++A+D TP+ R +Y+ A ++ + + +PK I + Q L+ A
Sbjct: 1 MVDFVGILKKAIDAQINVTPQVRERVYKRAIETLEHQFAAAT--IPKAIADEQKKILQSA 58
Query: 61 ILQVEKQ 67
I VE++
Sbjct: 59 IAAVEEE 65
>gi|114704941|ref|ZP_01437849.1| hypothetical protein FP2506_08391 [Fulvimarina pelagi HTCC2506]
gi|114539726|gb|EAU42846.1| hypothetical protein FP2506_08391 [Fulvimarina pelagi HTCC2506]
Length = 661
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 47/275 (17%)
Query: 270 TRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY-----------------------IGG 306
T+RLL DG+EVD GP+ F +++A +GG
Sbjct: 391 TQRLLPDGTEVDEGPAERQPNQFGEGTDVAAATTAEDPVSEGTSPTLSSEIGRDPEIVGG 450
Query: 307 -----------DENSTFVLGKKEIEEGNPLIGEGRVFINK--GRGQSSILSGKILWSLQQ 353
D +T V E GN + + VF + + +G ++WS+ +
Sbjct: 451 ETAEGTPEADADGENTDVAAVDPGENGNVPVAQRTVFYQERTSDQPGTQETGNVVWSVVE 510
Query: 354 EKSQGLKGLVIK------GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE-SQ 406
E ++G + +IP D + +MT++ NAD +L +HV+E+MF P +
Sbjct: 511 EPP--IEGQPPEPAIRAVAEIPEED--VTMTMTIRRNADPTLPASHVIELMFDTPDSFAG 566
Query: 407 DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDI 466
V ++R+++++T+ + + IS ++I+L ++ N +LE ++IDI
Sbjct: 567 GNVATVQRLALKRTEQARGEPLIGVAGKISDGFFIIALNNLDQAVENNLALLEGQQWIDI 626
Query: 467 PITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
PI Y SG++ L +I+KG G FK AI W++R+
Sbjct: 627 PIAYASGRRALVSIEKGVPGDRAFKEAIAAWDSRT 661
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D V+++ +D LP +TP+ RS +Y+ AR ++ R+++ P L ++ + N LE+A
Sbjct: 1 MADLSGVLRKTIDGLPRSTPDMRSRVYDKARAAIQRQIQVANPPLGDDVAAARLNALEEA 60
Query: 61 ILQVEK 66
I + E+
Sbjct: 61 IERTEQ 66
>gi|110635486|ref|YP_675694.1| hypothetical protein Meso_3157 [Mesorhizobium sp. BNC1]
gi|110286470|gb|ABG64529.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 544
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 28/248 (11%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENST--FVLGKKEIEEGNP- 324
K T+RLL DG EVD GP+ TS + G E G E E P
Sbjct: 301 KFTQRLLPDGREVDEGPAGGEAGLGEGTS---VAQAVQGSEAPVQGRPGGSAEPAESQPD 357
Query: 325 ---LIGEGRVFINKGRGQSSIL-----SGKILWSLQQEKSQG---LKGLVIKGDIPMIDN 373
IG+ +F + ++S L +G ++WS+ +E S G I+ + + +
Sbjct: 358 QSLPIGQKAIFYEE---RTSALEGYAENGSVVWSVVEE-SPGENLPPEPAIQAEATIPEK 413
Query: 374 AFSASMTLKCNADISLSITHVMEIMFSFPKE-SQDAVVDLRRISMRKTDN---SPSVLID 429
MT++ N D SL +H++E++F P+ + ++ RI+M++++ SP + I
Sbjct: 414 GLQLRMTIRRNTDQSLPASHIVELIFLTPENFPGGGINNVLRINMKRSEQDTGSPLLGIP 473
Query: 430 SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADI 489
+ I + +L++L ++ED NS +L +IDIPI Y SG++ L T++KG G I
Sbjct: 474 AKI---ADGFFLVALSDTQEDQRVNSTLLRRQSWIDIPIVYSSGRRALITMEKGLPGERI 530
Query: 490 FKSAIMQW 497
F A+ W
Sbjct: 531 FNEALDAW 538
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF V+++AV+ L ENTPE R IY AR+++ +L ++ P EI +RQ +E A
Sbjct: 1 MADFAAVLRKAVEALKENTPEAREKIYTKARSTIEAKLAAVS--SPPEIADRQRRLIEDA 58
Query: 61 ILQVEKQ 67
I V+ +
Sbjct: 59 IATVKAE 65
>gi|218672898|ref|ZP_03522567.1| hypothetical protein RetlG_15348 [Rhizobium etli GR56]
Length = 321
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEAL 72
>gi|148252860|ref|YP_001237445.1| hypothetical protein BBta_1299 [Bradyrhizobium sp. BTAi1]
gi|146405033|gb|ABQ33539.1| hypothetical protein BBta_1299 [Bradyrhizobium sp. BTAi1]
Length = 1763
Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 343 LSGKILWSLQQEKSQGLKGL-VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
+GK+ WSL+Q K + V+KG+I I+N A+++L+ N D L +HV+++ F++
Sbjct: 1608 FAGKVTWSLEQGKGPRVNAAPVLKGEIE-IENGMKATLSLRRNDDQELPASHVLDLSFAW 1666
Query: 402 PKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
P ++ + +R I ++ + + + ++ ++++L +E D RN +L+
Sbjct: 1667 PDQTT-GLSSMRGIGLKGAEAERGTALATQTARVTPRMFMVALSANEVDAKRNVLLLKGK 1725
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
++ DIPI Y G + L +I+KG G +F A W
Sbjct: 1726 QWFDIPIVYEGGNRALLSIEKGPDGDRVFNDAFANW 1761
>gi|239832769|ref|ZP_04681098.1| Myristoylated alanine-rich C-kinase substrate [Ochrobactrum
intermedium LMG 3301]
gi|239825036|gb|EEQ96604.1| Myristoylated alanine-rich C-kinase substrate [Ochrobactrum
intermedium LMG 3301]
Length = 475
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 28/238 (11%)
Query: 268 KITRRLLEDGSEVDVGPSTIP------VADFANTSNIAFKNYIGG---DENSTFVLGKKE 318
K+T+RL+ DGSE D GP+ + A+T A N G +N T +G++
Sbjct: 244 KLTQRLMPDGSETDSGPAGGANGIGEGTSTAASTPAPAETNSPAGAQPGQNQTVAVGQQA 303
Query: 319 IEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFS 376
L+ E R G G S+ G ++WS+ +E + + ++ + M +
Sbjct: 304 ------LLYEER----GGAGSDSVERGNVVWSVIEESPEDGQPAQPAVRATVTMPTSKVE 353
Query: 377 ASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNI 432
MT++ N D S+ +H++E++F+ P+ VVD ++R++ + T+ + P + + S I
Sbjct: 354 LKMTIRKNTDQSIPASHLIEMVFTVPEGFSGGVVDNVQRVTFKDTEQAAGNPLIAVPSKI 413
Query: 433 FVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
N +++ L + N ++ ++IDIPI+YR+G++ L +++KG G F
Sbjct: 414 ---GDNFFIVWLNDARTAQDTNLSLMRRLQWIDIPISYRNGRRALISLEKGVPGEKAF 468
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNILEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|218514056|ref|ZP_03510896.1| hypothetical protein Retl8_10302 [Rhizobium etli 8C-3]
Length = 182
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEAL 72
>gi|146343109|ref|YP_001208157.1| hypothetical protein BRADO6306 [Bradyrhizobium sp. ORS278]
gi|146195915|emb|CAL79942.1| hypothetical protein BRADO6306 [Bradyrhizobium sp. ORS278]
Length = 1738
Score = 85.1 bits (209), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 2/154 (1%)
Query: 345 GKILWSLQQEKS-QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK 403
GK+ WSL+ K + IKG+I I+N ++ L+ N ++ L +HVME+ F++
Sbjct: 1584 GKVTWSLEPSKGPRADASAAIKGEIE-IENGAKVTIALRRNTELELPASHVMELSFNWAD 1642
Query: 404 ESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
S + +R I ++ + + + ++ ++++L +E D RN +L+ ++
Sbjct: 1643 PSVTGLSSMRGIGLKGEEAERGTALVTQTAKVTPKYFMVALSANEVDAKRNMMLLKGKQW 1702
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
DIPI Y G + L +I+KG +G +FK A W
Sbjct: 1703 FDIPIVYEGGSRALLSIEKGSEGERVFKDAFASW 1736
>gi|146338377|ref|YP_001203425.1| helicase [Bradyrhizobium sp. ORS278]
gi|146191183|emb|CAL75188.1| hypothetical protein; putative helicase [Bradyrhizobium sp. ORS278]
Length = 1644
Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 345 GKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
GK+ W + E++ G IKGD+ ID A+++L+ N + + +H+ME+ F++P +
Sbjct: 1492 GKVTWRV--ERAAGSVPASIKGDVE-IDRQMKATLSLRPNKEADMPASHIMEVKFNWPDD 1548
Query: 405 SQDAVVD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
A VD L+ +SM+ + + + ++ ++I+L +E D RN +L+ +
Sbjct: 1549 PSHAGVDSLKGVSMKAKEAGRGSALSTLTAKVTPEFFMIALSANEVDKTRNVLLLKGKEW 1608
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
IDIPI Y G + + I+KG G F A W
Sbjct: 1609 IDIPIVYNGGSRAVLAIEKGADGERAFADAFTAW 1642
>gi|218509560|ref|ZP_03507438.1| hypothetical protein RetlB5_19713 [Rhizobium etli Brasil 5]
Length = 179
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSL 72
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEAL 72
>gi|153008563|ref|YP_001369778.1| hypothetical protein Oant_1232 [Ochrobactrum anthropi ATCC 49188]
gi|151560451|gb|ABS13949.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 479
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 28/239 (11%)
Query: 267 PKITRRLLEDGSEVDVGPSTIP------VADFANTSNIAFKNYIGG---DENSTFVLGKK 317
PK+T+RL+ DGSE D G + + A+T A N G +N T +G++
Sbjct: 247 PKMTQRLMPDGSETDSGSAGAANGIGEGTSTAASTPAPAETNTQTGAQPGQNQTVAVGQQ 306
Query: 318 EIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAF 375
L+ E R G G S+ G ++WS +E + + ++ + M +
Sbjct: 307 A------LLYEER----GGAGSDSVERGNVVWSTIEESPEDGQPAEPAVRATVTMPTSKV 356
Query: 376 SASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSN 431
MT++ N D S+ +H++E++F+ P+ VVD ++RI+ + T+ + P + + S
Sbjct: 357 ELKMTIRKNTDQSIPASHLIELVFTVPEGFTGGVVDNVQRITFKDTEQAAGNPLIAVPSK 416
Query: 432 IFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
I N +++ L + N ++ ++IDIPI+YR+G++ L +++KG G F
Sbjct: 417 I---GDNFFIVWLNDARTAQDTNLSLMRRLQWIDIPISYRNGRRALISLEKGVPGEKAF 472
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNILEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|218680390|ref|ZP_03528287.1| hypothetical protein RetlC8_16460 [Rhizobium etli CIAT 894]
Length = 159
Score = 83.6 bits (205), Expect = 8e-14, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 351 LQQEKSQG-LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAV 409
+Q E QG + ++G++ + + SA +T K N+D SL +H++EI+FS P +
Sbjct: 1 MQHEAGQGGRQEATVQGNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGS 60
Query: 410 VD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPI 468
+D ++RISM++T+ + + I+ + ++I+L + N ++ +IDIP+
Sbjct: 61 IDSVQRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRSWIDIPV 120
Query: 469 TYRSGQKILFTIDKGKKGADIFKSAIMQW 497
TYR+G++ L T++KG G + F +AI +W
Sbjct: 121 TYRNGRRALLTMEKGDTGTEAFNTAIKEW 149
>gi|319405170|emb|CBI78775.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 474
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 29/244 (11%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K+T+RLLEDGSEVDVGP A K+ E ++ V+ G G
Sbjct: 249 KLTQRLLEDGSEVDVGP--------------AEKSEFPSSEGTSTVIATNLKSFGQA--G 292
Query: 328 EGRVF---INKGRGQSSILSGKILWSLQQEKS-QGLKG-LVIKGDIPMIDNAFSASMTLK 382
E ++ G+++ +G WSL E S +GL+G L I+GDI + D S +TL+
Sbjct: 293 EAVLYQMPTKHDTGKAA--TGSASWSLITEDSVKGLQGELAIRGDIIIPDEGLSLRLTLR 350
Query: 383 CNADISLSITHVMEIMF-SFPKESQDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNSY 440
N D SL ++++++F + K S A+ D++ ++ ++++ S L+ + I + +
Sbjct: 351 RNTDESLHAAYIIDLIFITSDKFSGQAINDIKSLTFKESETSIGQTLVGTVTAKIDNDFF 410
Query: 441 LISLKGSEEDPF--RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+ +L GS PF RN +++ + ++ + I+ ++G+ T KG G IF I QW
Sbjct: 411 VFALIGSH--PFLDRNLQLIRDLDWLRLVISDKNGRMYELTFTKGPAGQTIFNEIIGQWL 468
Query: 499 NRSN 502
+ N
Sbjct: 469 MKKN 472
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M+DF+ +++ ++ E TP+ R +YE A + ++ ++K L K +E Q L+ A
Sbjct: 1 MIDFVGILKNTINAQKEITPKLREQVYERATKILEHKIVNIK--LSKAAIEEQRRALQSA 58
Query: 61 ILQVEKQ 67
I VE++
Sbjct: 59 ITTVEEE 65
>gi|304393310|ref|ZP_07375238.1| putative CheA signal transduction histidine kinase [Ahrensia sp.
R2A130]
gi|303294317|gb|EFL88689.1| putative CheA signal transduction histidine kinase [Ahrensia sp.
R2A130]
Length = 613
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 3/179 (1%)
Query: 322 GNPLIGEGRVFINKG--RGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASM 379
P + + + +G +S+ G+++WS+ QE G + I+ + D M
Sbjct: 430 ATPAVSQSAILYEEGGSPADNSLDQGRVIWSVVQEDVNGKQEPAIRARAEVPDRNLVLIM 489
Query: 380 TLKCNADISLSITHVMEIMFSFPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKN 438
TLK NAD +L +H++E++F+ P + S A+ ++ R ++ ++ + I+
Sbjct: 490 TLKRNADEALPASHLIELIFAVPDDFSGGAIEEINRFVLKDSEQGRGEGLVGVPAKIADG 549
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+LI+L E +N +L++ +IDIP+ YR+G++ L T++KG G +FK W
Sbjct: 550 IFLIALNNLEAAVAQNETLLQQRGWIDIPMQYRTGRRALITLEKGIPGDKVFKDVFAAW 608
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ V+QR + + P+ R +YE AR+++ R+L++ P + L+ + +KLE+A
Sbjct: 1 MADYHAVLQRTLSGFSDPKPQLREKLYERARSTIERQLKARTPAVDDATLKGELDKLEEA 60
Query: 61 ILQVE 65
I +E
Sbjct: 61 ITSIE 65
>gi|148254075|ref|YP_001238660.1| hypothetical protein BBta_2605 [Bradyrhizobium sp. BTAi1]
gi|146406248|gb|ABQ34754.1| hypothetical protein BBta_2605 [Bradyrhizobium sp. BTAi1]
Length = 1680
Score = 81.3 bits (199), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 345 GKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
GK+ W + E + G IKGD+ ID A+++L+ N + + +H++E+ F++P +
Sbjct: 1528 GKVTWRV--EPAAGSVPASIKGDVE-IDKQMKATLSLRPNKESEMPASHILEVKFNWPGD 1584
Query: 405 SQDAVVD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
A VD L+ +SM+ + + + ++ ++I+L +E D RN +L+ +
Sbjct: 1585 PSHAGVDTLKGVSMKAKEAGRGAALSTLTAKVTPEFFMIALSANEVDKTRNFLLLKGKEW 1644
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
IDIPI Y G + + I+KG G F A W
Sbjct: 1645 IDIPIVYNGGSRAVLAIEKGADGERAFTDAFTAW 1678
>gi|192293134|ref|YP_001993739.1| hypothetical protein Rpal_4773 [Rhodopseudomonas palustris TIE-1]
gi|192286883|gb|ACF03264.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 534
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 314 LGKKEIEEGNPLIGEGRVFI-----NKGRGQSSILSGKILWSLQQEKSQGLKG---LVIK 365
+G+ E+ P+ RV + N +G+ + G ++W +Q K KG + ++
Sbjct: 344 VGQPSTEQAAPVAQ--RVVLYDEDPNDPKGKQYV--GTVVWKTEQVKGASAKGGADIAVR 399
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE-SQDAVVDLRRISMRKTDNSP 424
DI + + AF +M+ + N D SL +H E+ F P + V ++ I M+ + S
Sbjct: 400 ADIEVPERAFKMTMSFRRNTDTSLPASHTAELTFILPADFPGGGVSNVPGILMKSNEQSR 459
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ ++ +L+ L E D RN ++L+E + D+PI Y +G++ + I+KG
Sbjct: 460 GTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKERSWFDVPIVYSNGRRAIIAIEKGG 519
Query: 485 KGADIFKSAIMQW 497
G F A W
Sbjct: 520 PGERAFNDAFKAW 532
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ-NQKSLHTSKQD 78
A+ +VE + Q++ S+ +
Sbjct: 61 AVRKVESEAAQRARDASRAE 80
>gi|39937354|ref|NP_949630.1| hypothetical protein RPA4294 [Rhodopseudomonas palustris CGA009]
gi|39651212|emb|CAE29735.1| unknown protein [Rhodopseudomonas palustris CGA009]
Length = 533
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 345 GKILWSLQQEKSQGLKG---LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
G ++W +Q K KG + ++ DI + + AF +M+ + N D SL +H E+ F
Sbjct: 375 GTVVWKTEQVKGASAKGGADIAVRADIEVPERAFKMTMSFRRNTDTSLPASHTAELTFIL 434
Query: 402 PKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P + V ++ I M+ + S + ++ +L+ L E D RN ++L+E
Sbjct: 435 PADFPGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKE 494
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+PI Y +G++ + I+KG G F A W
Sbjct: 495 RSWFDVPIVYSNGRRAIIAIEKGGPGERAFNDAFKAW 531
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ-NQKSLHTSKQD 78
A+ +VE + Q++ S+ +
Sbjct: 61 AVRKVESEAAQRARDASRAE 80
>gi|254719686|ref|ZP_05181497.1| hypothetical protein Bru83_09113 [Brucella sp. 83/13]
gi|265984701|ref|ZP_06097436.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306837856|ref|ZP_07470718.1| hypothetical protein BROD_0663 [Brucella sp. NF 2653]
gi|264663293|gb|EEZ33554.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306407095|gb|EFM63312.1| hypothetical protein BROD_0663 [Brucella sp. NF 2653]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSTQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
>gi|256061719|ref|ZP_05451856.1| hypothetical protein Bneo5_15366 [Brucella neotomae 5K33]
gi|261325725|ref|ZP_05964922.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261301705|gb|EEY05202.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGAETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|254700343|ref|ZP_05162171.1| hypothetical protein Bsuib55_05734 [Brucella suis bv. 5 str. 513]
gi|261750839|ref|ZP_05994548.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261740592|gb|EEY28518.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|254694343|ref|ZP_05156171.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 3 str. Tulya]
gi|261214651|ref|ZP_05928932.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260916258|gb|EEX83119.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGHASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|23502539|ref|NP_698666.1| hypothetical protein BR1681 [Brucella suis 1330]
gi|161619612|ref|YP_001593499.1| hypothetical protein BCAN_A1719 [Brucella canis ATCC 23365]
gi|163845261|ref|YP_001622916.1| hypothetical protein BSUIS_B1156 [Brucella suis ATCC 23445]
gi|225628250|ref|ZP_03786284.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|254703462|ref|ZP_05165290.1| hypothetical protein Bsuib36_05962 [Brucella suis bv. 3 str. 686]
gi|254708451|ref|ZP_05170279.1| hypothetical protein BpinM_16230 [Brucella pinnipedialis
M163/99/10]
gi|254708696|ref|ZP_05170507.1| hypothetical protein BpinB_00256 [Brucella pinnipedialis B2/94]
gi|254714543|ref|ZP_05176354.1| hypothetical protein BcetM6_14632 [Brucella ceti M644/93/1]
gi|254717441|ref|ZP_05179252.1| hypothetical protein BcetM_13761 [Brucella ceti M13/05/1]
gi|256030222|ref|ZP_05443836.1| hypothetical protein BpinM2_06176 [Brucella pinnipedialis
M292/94/1]
gi|256160396|ref|ZP_05458086.1| hypothetical protein BcetM4_15424 [Brucella ceti M490/95/1]
gi|256255604|ref|ZP_05461140.1| hypothetical protein BcetB_15248 [Brucella ceti B1/94]
gi|256370091|ref|YP_003107602.1| hypothetical protein BMI_I1702 [Brucella microti CCM 4915]
gi|260167897|ref|ZP_05754708.1| hypothetical protein BruF5_05927 [Brucella sp. F5/99]
gi|260568770|ref|ZP_05839238.1| basic-leucine zipper transcription factor [Brucella suis bv. 4 str.
40]
gi|261219273|ref|ZP_05933554.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261222809|ref|ZP_05937090.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261315949|ref|ZP_05955146.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261316189|ref|ZP_05955386.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261322334|ref|ZP_05961531.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261754092|ref|ZP_05997801.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261757337|ref|ZP_06001046.1| basic-leucine zipper transcription factor [Brucella sp. F5/99]
gi|265987252|ref|ZP_06099809.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265998767|ref|ZP_06111324.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294850934|ref|ZP_06791610.1| hypothetical protein BAZG_03064 [Brucella sp. NVSL 07-0026]
gi|23348538|gb|AAN30581.1| conserved hypothetical protein [Brucella suis 1330]
gi|161336423|gb|ABX62728.1| Hypothetical protein BCAN_A1719 [Brucella canis ATCC 23365]
gi|163675984|gb|ABY40094.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|225616096|gb|EEH13144.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|256000254|gb|ACU48653.1| hypothetical protein BMI_I1702 [Brucella microti CCM 4915]
gi|260154154|gb|EEW89236.1| basic-leucine zipper transcription factor [Brucella suis bv. 4 str.
40]
gi|260921393|gb|EEX88046.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260924362|gb|EEX90930.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295024|gb|EEX98520.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261295412|gb|EEX98908.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261304975|gb|EEY08472.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261737321|gb|EEY25317.1| basic-leucine zipper transcription factor [Brucella sp. F5/99]
gi|261743845|gb|EEY31771.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262553456|gb|EEZ09225.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264659449|gb|EEZ29710.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294821577|gb|EFG38573.1| hypothetical protein BAZG_03064 [Brucella sp. NVSL 07-0026]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|260459390|ref|ZP_05807645.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium
opportunistum WSM2075]
gi|259034944|gb|EEW36200.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium
opportunistum WSM2075]
Length = 558
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 339 QSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVME 396
Q S G ++WSL QE G + I+ + + F MT + N D +L +H++E
Sbjct: 331 QGSADPGNVIWSLVQESPGGDLPREPAIRAEATIPGKNFRLRMTFRRNTDKTLPASHIVE 390
Query: 397 IMFSFPKESQDAVVD-LRRISMRKTDN---SPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
++F P + VD + R++M+ ++ SP + I + I S +L++L ++ D
Sbjct: 391 MIFLTPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKI---SDGFFLVALNDAKADED 447
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
N +L ++ DIPI Y+SG++ L T++KG + F+ A+ W S
Sbjct: 448 ANLTLLRSQQWFDIPIVYKSGRRALMTLEKGSGAEETFQEALQAWAQLS 496
>gi|148559726|ref|YP_001259535.1| hypothetical protein BOV_1625 [Brucella ovis ATCC 25840]
gi|148370983|gb|ABQ60962.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|306841399|ref|ZP_07474102.1| Basic-leucine zipper transcription factor [Brucella sp. BO2]
gi|306288584|gb|EFM59933.1| Basic-leucine zipper transcription factor [Brucella sp. BO2]
Length = 465
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|13473316|ref|NP_104883.1| hypothetical protein mll3872 [Mesorhizobium loti MAFF303099]
gi|14024064|dbj|BAB50669.1| mll3872 [Mesorhizobium loti MAFF303099]
Length = 575
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 326 IGEGRVFINK--GRGQSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMTL 381
+G+ +F + Q S G I+WSL QE G I+ + + MT+
Sbjct: 393 VGQKAIFYEERTSTAQGSAEPGSIVWSLVQESPGGDLPPEPAIRAEATIPGKDIQLRMTI 452
Query: 382 KCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTD---NSPSVLIDSNIFVISK 437
+ N D +L +H++E++F P + VD + R++M+ ++ SP + I + I +
Sbjct: 453 RRNTDQTLPASHIIEMIFLTPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKI---AD 509
Query: 438 NSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+L++L ++ D N +L +ID+P+ Y++G++ L T++KG G +F AI W
Sbjct: 510 GFFLVALNDTKADEDANMTLLRGQDWIDVPVVYKTGRRALLTMEKGIPGEKVFDEAIKAW 569
Query: 498 ENRS 501
+ ++
Sbjct: 570 QAKT 573
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++A+D E TPE R+ Y+ AR+++ ++L P L +++ +Q LE A
Sbjct: 1 MADFVAVLKKALDKYGEPTPETRTRTYDGARSALVKKLAEFSPPLSADVVAKQKRSLEDA 60
Query: 61 ILQVEKQNQKSL 72
I VE + KS+
Sbjct: 61 IASVEHEYTKSV 72
>gi|225853139|ref|YP_002733372.1| hypothetical protein BMEA_A1735 [Brucella melitensis ATCC 23457]
gi|256114250|ref|ZP_05454995.1| hypothetical protein Bmelb3E_15653 [Brucella melitensis bv. 3 str.
Ether]
gi|256263370|ref|ZP_05465902.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
2 str. 63/9]
gi|265995556|ref|ZP_06108113.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|225641504|gb|ACO01418.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|262766840|gb|EEZ12458.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263093368|gb|EEZ17437.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
2 str. 63/9]
gi|326409695|gb|ADZ66760.1| conserved hypothetical protein [Brucella melitensis M28]
gi|326539402|gb|ADZ87617.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 465
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|256045292|ref|ZP_05448186.1| hypothetical protein Bmelb1R_12432 [Brucella melitensis bv. 1 str.
Rev.1]
gi|260565815|ref|ZP_05836298.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
1 str. 16M]
gi|265991719|ref|ZP_06104276.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|260151188|gb|EEW86283.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
1 str. 16M]
gi|263002675|gb|EEZ15078.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 465
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ DGSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVERGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|306844674|ref|ZP_07477259.1| Basic-leucine zipper transcription factor [Brucella sp. BO1]
gi|306274846|gb|EFM56616.1| Basic-leucine zipper transcription factor [Brucella sp. BO1]
Length = 465
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 254 GNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFV 313
G D+ + K T+RL+ DGSEVD G ++ TS A ST
Sbjct: 226 GGQDQASQAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA----------STAG 275
Query: 314 LGKKEIEEGNPLIGEGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDI 368
G + P+ + + + RG + S+ G ++WS+ +E + + I+ ++
Sbjct: 276 PGNPPSTQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPEDGQPAQPAIRANV 335
Query: 369 PMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---P 424
+ ++ MT++ N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P
Sbjct: 336 TIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNP 395
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + S I + N ++I L + N ++ ++IDIPI YR+G++ L +++KG
Sbjct: 396 LIAVPSKI---ADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGV 452
Query: 485 KGADIF 490
G F
Sbjct: 453 PGEKAF 458
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|316935810|ref|YP_004110792.1| hypothetical protein Rpdx1_4509 [Rhodopseudomonas palustris DX-1]
gi|315603524|gb|ADU46059.1| hypothetical protein Rpdx1_4509 [Rhodopseudomonas palustris DX-1]
Length = 534
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 345 GKILWSLQQEKSQGLKG---LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
G ++W +Q K KG + ++ DI + + F +M+ + N D SL +H E+ F
Sbjct: 376 GSVVWKTEQVKGASAKGGGDIAVRADIEVPERQFKMTMSFRRNTDTSLPASHTAELTFIL 435
Query: 402 PKESQDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P + Q V ++ I M+ + S + ++ +L+ L E D RN ++L+E
Sbjct: 436 PADFQGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVEADRSRNLQLLKE 495
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+PI Y +G++ + I+KG G F A W
Sbjct: 496 RSWFDVPIVYGNGRRAIIAIEKGGPGERAFNDAFKAW 532
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVESE 68
>gi|319781042|ref|YP_004140518.1| hypothetical protein Mesci_1308 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166930|gb|ADV10468.1| hypothetical protein Mesci_1308 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 552
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 326 IGEGRVFINK--GRGQSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMTL 381
+G+ +F + Q S G I+WSL QE G I+ + + MT+
Sbjct: 370 VGQKAIFYEERTSTAQGSAEPGNIVWSLVQESPGGDLPPEPAIRAEATIPGKDIQLRMTI 429
Query: 382 KCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTD---NSPSVLIDSNIFVISK 437
+ N D +L +H++E++F P + VD + R++M+ ++ SP + I + I +
Sbjct: 430 RRNTDQTLPASHIIEMIFLTPDGFEGGGVDNILRVAMKASEQDAGSPLIGIPAKI---AD 486
Query: 438 NSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+L++L ++ D N +L +ID+P+ Y++G++ L T++KG G +F AI W
Sbjct: 487 GFFLVALNDTKADEDANMTLLRGQDWIDVPVVYKTGRRALLTMEKGIPGEKVFDEAIKAW 546
Query: 498 ENRS 501
+ ++
Sbjct: 547 QAKT 550
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ +++ A+D + TPE+R+ IY R +A++L P E + Q LE A
Sbjct: 1 MADFVAILKNALDKHGDETPEKRTRIYASVRTMLAKKLGERSPPWAPEAIATQMRSLEDA 60
Query: 61 ILQVEKQNQKSL 72
I VE+ KS+
Sbjct: 61 ITSVERDYAKSV 72
>gi|260461444|ref|ZP_05809691.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032514|gb|EEW33778.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 205
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Query: 339 QSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVME 396
Q S G I+WSL QE G I+ + + MT++ N D +L +H++E
Sbjct: 38 QGSAEPGSIVWSLVQESPGGDLPPEPAIRAEATIPGKDIQLRMTIRRNTDQTLPASHIIE 97
Query: 397 IMFSFPKESQDAVVD-LRRISMRKTD---NSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
++F P + VD + R++M+ ++ SP + I + I + +L++L ++ D
Sbjct: 98 MIFLTPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKI---ADGFFLVALNDTKADED 154
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
N +L +ID+P+ Y++G++ L T++KG G +F AI W+ ++
Sbjct: 155 ANMTLLRGQDWIDVPVVYKTGRRALLTMEKGIPGEKVFDEAIKAWQAKT 203
>gi|62290553|ref|YP_222346.1| hypothetical protein BruAb1_1666 [Brucella abortus bv. 1 str.
9-941]
gi|82700469|ref|YP_415043.1| basic-leucine zipper (bZIP) transcription factor [Brucella
melitensis biovar Abortus 2308]
gi|189024774|ref|YP_001935542.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
S19]
gi|237816059|ref|ZP_04595055.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254689851|ref|ZP_05153105.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 6 str. 870]
gi|254697999|ref|ZP_05159827.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 2 str. 86/8/59]
gi|254730885|ref|ZP_05189463.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 4 str. 292]
gi|256258104|ref|ZP_05463640.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 9 str. C68]
gi|260547200|ref|ZP_05822938.1| basic-leucine zipper transcription factor [Brucella abortus NCTC
8038]
gi|260755383|ref|ZP_05867731.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260758604|ref|ZP_05870952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762436|ref|ZP_05874773.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884399|ref|ZP_05896013.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|297248954|ref|ZP_06932662.1| basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 5 str. B3196]
gi|62196685|gb|AAX74985.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82616570|emb|CAJ11649.1| Basic-leucine zipper (bZIP) transcription factor [Brucella
melitensis biovar Abortus 2308]
gi|189020346|gb|ACD73068.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
S19]
gi|237788722|gb|EEP62934.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260095565|gb|EEW79443.1| basic-leucine zipper transcription factor [Brucella abortus NCTC
8038]
gi|260668922|gb|EEX55862.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260672862|gb|EEX59683.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260675491|gb|EEX62312.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260873927|gb|EEX80996.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|297174087|gb|EFH33444.1| basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 5 str. B3196]
Length = 465
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
K T+RL+ +GSEVD G ++ TS A ST G + P+
Sbjct: 240 KFTQRLMPNGSEVDAGHASGAPGIGEGTSTAA----------STAGPGNPPSAQEQPVAV 289
Query: 328 EGRVFINKGRGQS---SILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLK 382
+ + + RG + S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 290 GQQALLYEERGGTETGSVQRGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIR 349
Query: 383 CNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKN 438
N D S+ +H++E++F+ P+ +D ++RI+ + T+ + P + + S I + N
Sbjct: 350 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADN 406
Query: 439 SYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
++I L + N ++ ++IDIPI YR+G++ L +++KG G F
Sbjct: 407 FFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAF 458
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKL--VTANASQAVAVRQRNLLEDA 58
Query: 61 ILQVE 65
I +VE
Sbjct: 59 IAEVE 63
>gi|86748456|ref|YP_484952.1| hypothetical protein RPB_1331 [Rhodopseudomonas palustris HaA2]
gi|86571484|gb|ABD06041.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 540
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 345 GKILWSLQQEKSQGLKG---LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
G ++W +Q K KG L ++ DI + + F +M+ + N D SL +H E+ F
Sbjct: 382 GTVVWRTEQIKGASAKGGADLAVRADIEVPERKFKMTMSFRRNTDTSLPASHTAELTFIL 441
Query: 402 PKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P++ S V ++ I M+ + + + ++ +L+ L E D RN ++L+E
Sbjct: 442 PQDFSGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKE 501
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+PI Y + ++ + I+KG G F A W
Sbjct: 502 RSWFDVPIVYTNQRRAIIAIEKGPPGERAFGEAFAAW 538
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E+R IYE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDPSAPGEQRRAIYERARSALITQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ-NQKSLHTSKQD 78
A+ +VE + Q+S ++ +
Sbjct: 61 AVRKVESEAAQRSRDAARAE 80
>gi|91978356|ref|YP_571015.1| hypothetical protein RPD_3893 [Rhodopseudomonas palustris BisB5]
gi|91684812|gb|ABE41114.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 541
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 345 GKILWSLQQEKSQGLKG---LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
G ++W +Q K KG L ++ DI + + F +M+ + N D SL +H E+ F
Sbjct: 383 GTVVWRTEQIKGASAKGGADLAVRADIEVPERKFKMTMSFRRNTDTSLPASHTAELTFIL 442
Query: 402 PKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P++ + V ++ I M+ + + + ++ +L+ L E D RN ++L+E
Sbjct: 443 PQDFTGGGVANVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKE 502
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+PI Y + ++ + I+KG G F A W
Sbjct: 503 RSWFDVPIVYTNQRRAIIAIEKGPPGERAFSEAFGAW 539
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ-NQKSLHTSKQD 78
A+ +VE + Q+S S+ +
Sbjct: 61 AVRKVESEAAQRSRDASRAE 80
>gi|163867807|ref|YP_001609011.1| hypothetical protein Btr_0568 [Bartonella tribocorum CIP 105476]
gi|161017458|emb|CAK01016.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 473
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 31/280 (11%)
Query: 227 MAIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVG-PS 285
+ +G+ + G+ S H L E+L K + ++ K+T+RLLEDGSEVDVG
Sbjct: 200 LTVGIFFIGGRVFVSNDHQLLGETLQASQGVPKAL--SVKRKLTQRLLEDGSEVDVGLKQ 257
Query: 286 TIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSG 345
D S + KN +++ G + + R + + + +G
Sbjct: 258 AADSYDEEGISKVVAKNLQSLEKS------------GEAVFYQARTNYDAEK----VATG 301
Query: 346 KILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
W+L +E +KG + I+GDI + D S + L+ NAD S ++M+++F
Sbjct: 302 SARWTLIRESH--VKGASEEMAIQGDITIPDEGLSLRLILRRNADRSFPAAYIMDLIFIL 359
Query: 402 P-KESQDAVVDLRRISMRKTDNSPSVLIDSNIFV-ISKNSYLISLKGSEEDPF--RNSKI 457
K S A+ +++ ++ + ++ S + I I+ + +L++L G+ PF RN ++
Sbjct: 360 SDKFSGKAISNVQALTFKASEQSIGQALTRTISAKINDDFFLVALSGNH--PFLDRNLQL 417
Query: 458 LEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ E +I + +T ++G+ T KG G IF I QW
Sbjct: 418 MRELNWIRLVLTDKNGRINELTFAKGPTGESIFNEVIGQW 457
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFI ++++A++ TP+ R IY+ A ++ + + ++P+ I + Q L+ A
Sbjct: 1 MVDFIGILKKAINAQNNVTPQVRQRIYKRATETLEHQF--LTAKIPQAIADEQRRILQSA 58
Query: 61 ILQVEKQ 67
I VE++
Sbjct: 59 ITTVEEE 65
>gi|254473130|ref|ZP_05086528.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957851|gb|EEA93053.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 592
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 345 GKILWSLQQEKSQGLKGL-VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK 403
G ++W+L + + G VIK + S MTLK N+D SL +H++E+ F FP+
Sbjct: 442 GNVVWTLDE-----VNGTSVIKAVATLPSRNLSVEMTLKPNSDQSLPASHLLELNFIFPE 496
Query: 404 E-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYR 462
V + + ++KT++ +D +S + I+L S E+ +N + L E
Sbjct: 497 GFDGKGVEKVPGLILKKTESEAGDPLDGAAVKVSDTLFWIALSDSNEEKAKNLQRLAERE 556
Query: 463 FIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ID+P+ Y SG++ + T +KG G + AI W
Sbjct: 557 WIDVPLLYNSGRRAMLTFEKGTTGNKVVAQAIKSW 591
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL-PKEILERQFNKLEQ 59
M D+ V+++AV L ENT R +Y+ ARN++ ++L+S P L P +I E Q KLE+
Sbjct: 1 MADYNSVLKKAVAGLQENTGSARRAVYQRARNAIVKQLKSYDPPLSPSQITEEQL-KLEE 59
Query: 60 AILQVEKQ 67
AI +VE +
Sbjct: 60 AIRKVEAE 67
>gi|148253375|ref|YP_001237960.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1]
gi|146405548|gb|ABQ34054.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1]
Length = 546
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
Query: 345 GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP 402
G ++W +Q K+ G + + ++ DI + D F +M+ + N D SL +H E+ F P
Sbjct: 389 GSVVWRTEQIKATGTQKADIAVRADIEIPDRKFKMTMSFRRNTDTSLPASHTAELTFILP 448
Query: 403 KE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
++ S V ++ I M+ + S + ++ +L+ L + D RN ++L+E
Sbjct: 449 QDFSGGGVGNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVDADRTRNVQLLKER 508
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+P+ Y + ++ + I+KG G F A W
Sbjct: 509 SWFDVPLVYTNQRRAIIAIEKGAPGERAFNDAFTLW 544
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGESRRALYERARAALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQV 64
A+ +V
Sbjct: 61 AVRKV 65
>gi|328542555|ref|YP_004302664.1| hypothetical protein SL003B_0935 [polymorphum gilvum SL003B-26A1]
gi|326412301|gb|ADZ69364.1| hypothetical protein SL003B_0935 [Polymorphum gilvum SL003B-26A1]
Length = 588
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 338 GQSSILSGKILWSLQQEK-SQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVME 396
G + G++ WS+ +E + G K V+ + + D S ++ +K N D SL +H++E
Sbjct: 423 GSGTASQGRVAWSVTEETDASGRKETVLAANAEIPDRNVSVTIRIKPNTDSSLPASHLVE 482
Query: 397 IMFSFPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNS 455
+ F P+ S V ++ + M+ T+ + + ++ + I+L E + RN
Sbjct: 483 VQFQLPEGFSGRDVANVPGLVMKPTEEARGDALLGASVKVAPGYFWIALSSIESERERNI 542
Query: 456 KILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
++ E +IDIPI Y +G++ + T++KG G+ + A+ W
Sbjct: 543 ALMRERGWIDIPILYDTGKRAILTLEKGTPGSRALEQAMTVW 584
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL-PKEILERQFNKLEQ 59
M D+ ++++ + +LPEN R +Y ARN++ +L++ +P L P EI Q +LE+
Sbjct: 1 MADYYSILKKTIASLPENNGAARRSVYSRARNAIVNQLKAYEPPLSPSEITAEQL-RLEE 59
Query: 60 AILQVEKQNQKSL----HTSKQDKESDIPKSSVTS 90
AI +VE + + + ++ + IP V S
Sbjct: 60 AIRKVEAEAARETLGLGRPAAAEQAAPIPTVQVPS 94
>gi|27382162|ref|NP_773691.1| hypothetical protein bll7051 [Bradyrhizobium japonicum USDA 110]
gi|27355332|dbj|BAC52316.1| bll7051 [Bradyrhizobium japonicum USDA 110]
Length = 541
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 345 GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP 402
G ++W L+ K+ G + + ++ DI + D F +M+ + N D SL +H E+ F P
Sbjct: 384 GSVVWRLEPIKASGNQKADVAVRADIEIPDRKFKMTMSFRRNTDSSLPASHTAELTFILP 443
Query: 403 KE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
++ +V ++ I M+ + + + ++ +L+ L + D RN ++L+E
Sbjct: 444 QDFPGGSVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRARNVQLLKER 503
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+P+ Y + ++ + I+KG G F A QW
Sbjct: 504 SWFDVPLVYANQRRAIIAIEKGAPGERAFNDAFAQW 539
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAALDPNAPGESRRALYERARTALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQVEKQ-NQKSLHTSK 76
A+ +VE + Q++ S+
Sbjct: 61 AVRKVESEAAQRAREASR 78
>gi|49475180|ref|YP_033221.1| hypothetical protein BH03800 [Bartonella henselae str. Houston-1]
gi|49237985|emb|CAF27190.1| hypothetical protein BH03800 [Bartonella henselae str. Houston-1]
Length = 451
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 121/525 (23%), Positives = 224/525 (42%), Gaps = 116/525 (22%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQF--NKLE 58
MVDF+ ++++A++ TP+ R IY+ A + LE QF +
Sbjct: 1 MVDFVGILKKAINAQNNVTPQLRKRIYKRALKT----------------LEHQFVATTIP 44
Query: 59 QAILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSIL--------RSN 110
QAI + +++ I +S++ + E +L +SS++ ++
Sbjct: 45 QAIAEEQRK---------------ILQSAIATVEAEYLAVEKELLSSVIGWNPKGITEAD 89
Query: 111 KHKKLANILSVQGKSRTNTNLS---PKNF-SCRLREILSFSVNTQHEYDSS--VSPVAA- 163
KH + ++LS QG + +S P N +C +QH +++ VSP+A+
Sbjct: 90 KHTQ-TSVLS-QGHESSILGMSDAEPVNMKAC---------FASQHADNTTLRVSPLASP 138
Query: 164 IEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLII 223
++ D + ++ IFS R + +S + +F +I
Sbjct: 139 LQGDNPHI----VSHIFS-----------QALRRANRSSMQRRIVISTAIVTGFFTLII- 182
Query: 224 LLGMAIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFS---GIRPKITRRLLEDGSEV 280
G+ + G+ S H L GGNV +V ++ K+T+RLLEDGSEV
Sbjct: 183 ------GICFVGGRVFISNDH-----QLSGGNVKASHVLPQTLSVKRKLTQRLLEDGSEV 231
Query: 281 DVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQS 340
D S AD +N I+ I S LG+ + + R + +
Sbjct: 232 DT--SLDQTADSSNEEGIS--TAISSSLQSMEQLGE-------AVFYQARTDYDTEK--- 277
Query: 341 SILSGKILWSLQQEKSQGLKGL----VIKGDIPMIDNAFSASMTLKCNADISLSITHVME 396
+ +G W+L +E +KG I+GDI + D S + L+ N D+S ++M+
Sbjct: 278 -VATGSARWTLIKESR--VKGAPEESAIQGDITIPDKGLSLRLILRRNTDVSFPAAYIMD 334
Query: 397 IMFSFP-KESQDAVVDLRRISMRKTDNSPSVLIDSNIFV-ISKNSYLISLKGSEEDPF-- 452
++F K S A+ ++ ++ + ++ S + + I + +L++L S + PF
Sbjct: 335 LIFILSDKFSGQAISSVQALTFKASEQSVGQALTRTVTAKICDDFFLVAL--SSKHPFLN 392
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN +++ E ++ + +T ++G+ T KG G IF I +W
Sbjct: 393 RNLQLMRELDWMRLVLTDKNGRTNELTFAKGPIGESIFNKVIGKW 437
>gi|319406709|emb|CBI80342.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 480
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 129/263 (49%), Gaps = 26/263 (9%)
Query: 249 ESLDGGNVDKKNVF---SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG 305
+SL N+ N+ + K+T+RLLEDGSEVDVGP+ + +T I+ +
Sbjct: 226 KSLQEKNIQASNILQKATQTNRKLTQRLLEDGSEVDVGPA--ERTESPSTEGIS--TVVA 281
Query: 306 GDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKS-QGLKG-LV 363
+ S +G+ + + G+ +G + WSL E S +G++G L
Sbjct: 282 TNLKSFGQVGEAVLHQMATKHDSGKA-----------TTGSVSWSLITEDSVKGIQGELA 330
Query: 364 IKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP-KESQDAVVDLRRISMRKTDN 422
I+GDI + D S +TL+ N D +L ++++++F K S A+ +++ + +++
Sbjct: 331 IRGDITIPDEGLSLRLTLRRNTDEALHAAYIIDLIFIISDKFSGQAINNIKSLIFKESGK 390
Query: 423 S-PSVLIDSNIFVISKNSYLISLKGSEEDPF--RNSKILEEYRFIDIPITYRSGQKILFT 479
S L+ + I + ++++L G+ PF RN +++ + + + I+ ++G+
Sbjct: 391 SIGQTLVGTVTAKIDNDFFVVALIGNH--PFLDRNLQLMRDLDWFHLVISDKNGRMHELN 448
Query: 480 IDKGKKGADIFKSAIMQWENRSN 502
KG G IFK I +W + N
Sbjct: 449 FAKGPAGQAIFKEVIEKWLMKEN 471
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ +++ ++ + TP R IYEHA ++ + +MK LPKE +E Q + L+ A
Sbjct: 1 MVDFVGILKNKINAQKDITPRLRKQIYEHATKTLEHTIVNMK--LPKEAIEAQRSALQSA 58
Query: 61 ILQVEKQ 67
I VE++
Sbjct: 59 ITIVEEE 65
>gi|90425560|ref|YP_533930.1| hypothetical protein RPC_4085 [Rhodopseudomonas palustris BisB18]
gi|90107574|gb|ABD89611.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 553
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 345 GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP 402
G ++W +Q K G K + ++ D+ + + F +M+ + N D SL +H E+ F P
Sbjct: 396 GTVVWRTEQIKGSGGKPGDIAVRADVEIAERKFKMTMSFRRNTDASLPASHTAELTFVLP 455
Query: 403 KE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
+ S V ++ I M+ + + + ++ +L+ L + D RN ++L+E
Sbjct: 456 ADFSGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRARNLQLLKER 515
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ DIP+ Y + ++ + I+KG G F A W
Sbjct: 516 SWFDIPLVYSNQRRAIIAIEKGSPGERAFSDAFTSW 551
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E R +YE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPSAPGESRRALYERARSALIAQLRGVQPPLSESEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVESE 68
>gi|118588313|ref|ZP_01545722.1| hypothetical protein SIAM614_23567 [Stappia aggregata IAM 12614]
gi|118439019|gb|EAV45651.1| hypothetical protein SIAM614_23567 [Stappia aggregata IAM 12614]
Length = 583
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 347 ILWSLQQEKSQGLKGL-VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE- 404
++WS+++E + K L V+ + + + + +K N D SL +H++EI + FP+
Sbjct: 428 VVWSVEEETNLDGKALAVLSASVEIPERDVKVDIRIKPNDDTSLPASHLVEIKYEFPENF 487
Query: 405 SQDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
+ VV++ + M+ T+ + LI +++ V S + I+L + RN +L E +
Sbjct: 488 APGDVVNVPGLVMKPTEEARGDALIGASVKV-SPGFFWIALSSLPNEQQRNLALLRERGW 546
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
IDIP+ Y +G++ + T++KG GAD + AI W+
Sbjct: 547 IDIPMLYENGKRGILTLEKGTVGADAVEKAITAWQ 581
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL-PKEILERQFNKLEQ 59
M D+ ++++ + +LPEN R +Y ARN++ +L++ +P L P EI Q +LE+
Sbjct: 1 MADYYSILKKTIASLPENNGAARRSVYSRARNAIVNQLKAYEPPLAPSEITAEQL-RLEE 59
Query: 60 AILQVEKQ 67
AI +VE +
Sbjct: 60 AIRKVEAE 67
>gi|146342760|ref|YP_001207808.1| hypothetical protein BRADO5934 [Bradyrhizobium sp. ORS278]
gi|146195566|emb|CAL79593.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 546
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 345 GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP 402
G ++W +Q K+ G + + ++ DI + D F +M+ + N D SL +H E+ F P
Sbjct: 389 GSVVWRTEQIKATGTQKADIAVRADIEIPDRKFKMTMSFRRNTDTSLPASHTAELTFILP 448
Query: 403 KE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
+ V ++ I M+ + + + ++ +L+ L + D RN ++L+E
Sbjct: 449 QNFDGGGVGNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRTRNVQLLKER 508
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ D+P+ Y + ++ + I+KG G F A W
Sbjct: 509 SWFDVPLVYSNQRRAIIAIEKGAPGERAFNDAFAVW 544
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGESRRALYERARAALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQV 64
A+ +V
Sbjct: 61 AVRKV 65
>gi|158426295|ref|YP_001527587.1| hypothetical protein AZC_4671 [Azorhizobium caulinodans ORS 571]
gi|158333184|dbj|BAF90669.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 450
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Query: 345 GKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G + W + E G G + I+ +I + + + S TL+ N D +L +H +EI F+
Sbjct: 286 GTVTW--KTETVSGGPGQPPDIGIRAEIQIPERKINVSFTLRRNLDQTLPASHTIEINFA 343
Query: 401 FPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P + V ++ + +++T+++ + +S S+L+ L ++ D RN ++L+
Sbjct: 344 LPPDFPYGGVANVPVVRVKQTESAQGAPLAGLSVKVSSTSFLVGLSAAQVDKERNLQLLQ 403
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+IDIPI Y + ++ + DKG G F+ A W
Sbjct: 404 TRPWIDIPIVYTNNKRAIIAFDKGAAGTQAFQDAFSAW 441
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ LP+NT E R +Y+ AR ++ ++L S+ P LP+ + R+ LE+A
Sbjct: 1 MADYYPLLVRAISGLPQNTAEARKVVYDRARAALLKQLRSVDPPLPEGEIGRERLSLEEA 60
Query: 61 ILQVEKQ 67
I ++EK+
Sbjct: 61 IRRIEKE 67
>gi|220927319|ref|YP_002502621.1| hypothetical protein Mnod_7582 [Methylobacterium nodulans ORS 2060]
gi|219951926|gb|ACL62318.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 409
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 343 LSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF 399
+ G+++W L + Q L+ V++ + + + S ++ ++ N D +L +HV+E+ F
Sbjct: 253 IQGQVVWRLDAINAGQGQPLQ-TVVRATLEVQEAGLSLALVIRRNTDTTLPASHVIELTF 311
Query: 400 SFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
+ P +V D+ + + ++ + + +N +LI L + D RNS +L
Sbjct: 312 T-PGNPSRSVRDVGLLQFKDDESGRGSPVSGLPVPVRENIFLIGLSSLKSDVERNSDLLM 370
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+ID+PI Y SG + + T +KG G + + A QW+
Sbjct: 371 RRNWIDLPIRYASGGRAILTFEKGSAGEQVMRDAFAQWQ 409
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P+ R +YE AR ++ +L S+ P L +E ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPDMRKAVYERARAALTGQLRSLDPPLSEEDIDAERRSLDAA 60
Query: 61 ILQVE 65
I ++E
Sbjct: 61 IDRLE 65
>gi|299134306|ref|ZP_07027499.1| conserved hypothetical protein [Afipia sp. 1NLS2]
gi|298591053|gb|EFI51255.1| conserved hypothetical protein [Afipia sp. 1NLS2]
Length = 513
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 345 GKILWSLQQ--EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSIT-HVMEIMFSF 401
G ++W L Q + IK D+ + D ++T+ N D S+ T H MEI+F+
Sbjct: 356 GTVVWRLDQVAASPKQKPDTAIKADVELPDRKMKVALTIMRNTDPSMPATSHTMEIVFTV 415
Query: 402 PKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
+ + ++ + + D + + + +LI L + D RN ++L+E
Sbjct: 416 GPDFGTTIANVPGVYAKSPDQPRGTPLAATSVKVQDGYFLIGLSNVDVDRARNIQVLKER 475
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+DIPI Y +G++ + +I+KG G F A W
Sbjct: 476 SSLDIPIVYGNGKRAILSIEKGSPGERTFNEAFSAW 511
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNL-PENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RAV L P + E R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAVAGLDPNASGESRRALYERARTALIAQLRGVQPPLTEAEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVEAE 68
>gi|85715271|ref|ZP_01046254.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A]
gi|85697917|gb|EAQ35791.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A]
Length = 510
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 345 GKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G ++W + E+ +G G + ++ +I + + F +M+ + N D SL +H E+ F
Sbjct: 353 GSVVW--RTEEVKGAAGNKPEIAVRAEIDIPERKFKMTMSFRRNTDTSLPASHTAELTFV 410
Query: 401 FPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P++ V ++ I M+ + S + ++ +L+ L E D RN ++L+
Sbjct: 411 LPQDFDGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVESDRVRNLQLLK 470
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
E + D+P+ Y + ++ + I+KG G F A W
Sbjct: 471 ERSWFDVPLVYTNQRRAIIAIEKGAPGERAFNEAFTAW 508
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDVNAPGEQRRALYERARTALIAQLRGVEPPLSESEITRERLALEE 60
Query: 60 AILQVEKQ-NQKSLHTSK 76
A+ +VE + Q++ S+
Sbjct: 61 AVRKVESEAAQRAREASR 78
>gi|92116702|ref|YP_576431.1| hypothetical protein Nham_1124 [Nitrobacter hamburgensis X14]
gi|91799596|gb|ABE61971.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 518
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 345 GKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G ++W + E+ +G+ G + ++ DI + + F +M+ + N D SL +H E+ F
Sbjct: 361 GSVVW--RTEEVKGVAGKTPEIAVRADIDIPERQFKMTMSFRRNTDTSLPASHTAELTFV 418
Query: 401 FPKESQDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P++ + V ++ I M+ + + + ++ +L+ L E D RN ++L+
Sbjct: 419 LPQDFEGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVEADRSRNLQLLK 478
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
E + D+P+ Y + ++ + I+KG G F A W
Sbjct: 479 ERSWFDVPLVYTNQRRAIIAIEKGAPGERAFNEAFTAW 516
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDANAPGEQRRALYERARTALIAQLRSVEPPLSESEITRERLSLEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVESE 68
>gi|148251921|ref|YP_001236506.1| hypothetical protein BBta_0307 [Bradyrhizobium sp. BTAi1]
gi|146404094|gb|ABQ32600.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 472
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 344 SGKILWSLQQEKSQ--GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF-S 400
SG ++W ++ KS G I+ +I + + S+ L+ N D +L +HV E+ F
Sbjct: 309 SGSVVWRIETVKSAQSGADTAAIRAEIDIPERKLKVSLQLRRNDDPTLPASHVAELTFKP 368
Query: 401 FPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P+ A+ ++ + M+ ++ + + I++ S+L+ L E D RN ++L
Sbjct: 369 APEFVGGAISNVPGMLMKTSEQARGTPLAGLAVKITEGSFLVGLSNVEADRARNEELLAG 428
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ DIP+ Y S ++ + I KG G +F A W
Sbjct: 429 REWFDIPLVYASQRRGILAIGKGPSGDRVFADAFAAW 465
>gi|75677145|ref|YP_319566.1| hypothetical protein Nwi_2964 [Nitrobacter winogradskyi Nb-255]
gi|74422015|gb|ABA06214.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 540
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 345 GKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G ++W + E+ +G G + ++ +I + + F +M+ + N D SL +H E+ F
Sbjct: 383 GSVVW--RTEEVKGAAGSKPEIAVRAEIDIPERKFKMTMSFRRNTDTSLPASHTAELTFV 440
Query: 401 FPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P + V ++ + M+ + + + ++ +L+ L E D RN ++++
Sbjct: 441 LPPDFDGGGVSNVPGVLMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVESDRTRNLQLMK 500
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
E ++DIP+ Y + ++ + I+KG G F A +W
Sbjct: 501 ERSWLDIPLVYTNQRRAIIAIEKGAPGERAFNEAFTEW 538
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDVNAPGEQRRALYERARTALIAQLRGVEPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVESE 68
>gi|254559687|ref|YP_003066782.1| hypothetical protein METDI1148 [Methylobacterium extorquens DM4]
gi|254266965|emb|CAX22765.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 492
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 337 RGQSSILSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
R Q +G +W L+ E+ + L+ ++ ++ + + SMT++ N D +L +H
Sbjct: 326 RAQPIATNGHTVWRLEAVNGEQGEPLQ-TALRVNVEFPEAGLTLSMTMRKNLDATLPASH 384
Query: 394 VMEIMFSFPKES--QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
+E+ F+ ++ Q AV ++ + ++ + S + + +N +LI L + D
Sbjct: 385 TVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLKSDV 444
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 445 DRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 492
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQVEKQ 67
I ++E +
Sbjct: 61 IGRLEAE 67
>gi|209886266|ref|YP_002290123.1| hypothetical protein OCAR_7154 [Oligotropha carboxidovorans OM5]
gi|209874462|gb|ACI94258.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
Length = 515
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEG 322
+G++PKIT R+ + D G PVA A I + +E+ + GK+ +
Sbjct: 315 TGVQPKITDRV----GQPDAGQQVAPVAQRA----ILY------EEDPSDPQGKQTV--- 357
Query: 323 NPLIGEGRVFINKGRGQSSILSGKILWSLQQ--EKSQGLKGLVIKGDIPMIDNAFSASMT 380
G ++W L Q + IK D+ + D ++T
Sbjct: 358 ----------------------GTVVWRLDQVAPSPKQKPDTAIKADVELPDRKVKVALT 395
Query: 381 LKCNADISLSIT-HVMEIMFSFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNS 439
+ N D ++ T H MEI+F + + ++ + + D + + +
Sbjct: 396 IMRNTDPTMPATSHTMEIVFVVGPDFGTTIANVPGVYAKSPDQPRGTPLAATSVKVQDGY 455
Query: 440 YLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+LI L + D RN ++L+E +DIPI Y +G++ + +I+KG G F A W
Sbjct: 456 FLIGLSNVDVDRARNIQVLKERSSLDIPIVYGNGKRAILSIEKGSPGDRAFNEAFSAW 513
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNL-PENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RAV L P T E R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAVAGLDPNATGESRRALYERARTALIAQLRGVQPPLTEAEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVEAE 68
>gi|17986635|ref|NP_539269.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
gi|17982250|gb|AAL51533.1| hypothetical transcription regulator [Brucella melitensis bv. 1
str. 16M]
Length = 177
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Query: 336 GRGQSSILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLKCNADISLSITH 393
G S+ G ++WS+ +E + + I+ ++ + ++ MT++ N D S+ +H
Sbjct: 13 GTETGSVERGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASH 72
Query: 394 VMEIMFSFPKESQDAVVD-LRRISMRKTDNS---PSVLIDSNIFVISKNSYLISLKGSEE 449
++E++F+ P+ +D ++RI+ + T+ + P + + S I + N ++I L +
Sbjct: 73 LIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKI---ADNFFIIWLNDART 129
Query: 450 DPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAI 494
N ++ ++IDIPI YR+G++ L +++KG G F +
Sbjct: 130 AQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAFNDVL 174
>gi|307944596|ref|ZP_07659936.1| putative CheA signal transduction histidine kinase [Roseibium sp.
TrichSKD4]
gi|307772345|gb|EFO31566.1| putative CheA signal transduction histidine kinase [Roseibium sp.
TrichSKD4]
Length = 588
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 347 ILWSLQQEKS-QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE- 404
++WSL+ E G V+ D+ + + + ++ +K N D SL +H++EI + FP+
Sbjct: 433 VVWSLEDETDLSGKAQKVLVADVTIPERDVNVNLRIKPNDDTSLPASHLVEIKYEFPENY 492
Query: 405 SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKG--SEEDPFRNSKILEEYR 462
S VV++ + M+ T+ + + +S + I+L SE D RN +L E
Sbjct: 493 SAGDVVNVPGLVMKPTEEARGDALLGASVKVSPGYFWIALSSLTSERD--RNLGLLRERG 550
Query: 463 FIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+IDIP+ Y +G++ + T++KG G+ AI W
Sbjct: 551 WIDIPMLYDNGKRGILTLEKGGVGSQAVDQAISSW 585
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL-PKEILERQFNKLEQ 59
M D+ ++++ + +LPE+ R +Y ARN++ +L++ +P L P EI Q +LE+
Sbjct: 1 MADYYSILKKTIASLPESNGSARRSVYSRARNAIVSQLKAYEPPLSPSEITAEQL-RLEE 59
Query: 60 AILQVEKQ 67
AI +VE +
Sbjct: 60 AIRKVEAE 67
>gi|240137509|ref|YP_002961980.1| hypothetical protein MexAM1_META1p0777 [Methylobacterium extorquens
AM1]
gi|240007477|gb|ACS38703.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 493
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 337 RGQSSILSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
R Q +G +W L+ E+ + L+ ++ ++ + + +MT++ N D +L +H
Sbjct: 327 RAQPIATNGHTVWRLEAVNGEQGEPLQ-TALRVNVEFPEAGLTLAMTMRKNLDATLPASH 385
Query: 394 VMEIMFSFPKES--QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
+E+ F+ ++ Q AV ++ + ++ + S + + +N +LI L + D
Sbjct: 386 TVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLKSDV 445
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 446 DRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 493
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 I 61
I
Sbjct: 61 I 61
>gi|163850433|ref|YP_001638476.1| hypothetical protein Mext_1000 [Methylobacterium extorquens PA1]
gi|163662038|gb|ABY29405.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
Length = 492
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Query: 337 RGQSSILSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
R Q +G +W L+ E+ + L+ ++ ++ + + +MT++ N D +L +H
Sbjct: 326 RAQPIATNGHTVWRLEAVNGEQGEPLQ-TALRVNVEFPEAGLTLAMTMRKNLDATLPASH 384
Query: 394 VMEIMFSFPKES--QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
+E+ F+ ++ Q AV ++ + ++ + S + + +N +LI L + D
Sbjct: 385 TVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLKSDV 444
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 445 DRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 492
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQVEKQ 67
I ++E +
Sbjct: 61 IGRLEAE 67
>gi|218528992|ref|YP_002419808.1| hypothetical protein Mchl_0963 [Methylobacterium chloromethanicum
CM4]
gi|218521295|gb|ACK81880.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 493
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 337 RGQSSILSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
R Q +G +W L+ E+ + L+ ++ ++ + + +MT++ N D +L +H
Sbjct: 326 RAQPIATNGHTVWRLEAVNGEQGEPLQ-TALRVNVEFPEAGLTLAMTMRKNLDATLPASH 384
Query: 394 VMEIMFSFPKES--QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
+E+ F+ ++ Q AV ++ + ++ + S + + +N +LI L + D
Sbjct: 385 TVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLKSDV 444
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW
Sbjct: 445 DRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQW 490
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQVEKQ 67
I ++E +
Sbjct: 61 IGRLEAE 67
>gi|115526134|ref|YP_783045.1| hypothetical protein RPE_4140 [Rhodopseudomonas palustris BisA53]
gi|115520081|gb|ABJ08065.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 515
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 345 GKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
G ++W +Q K + ++ D+ + + +F +M+ + N D SL +H E+ F P +
Sbjct: 360 GTVVWRTEQIKGGKGSDIAVRADLEIPERSFKMTMSFRRNTDSSLPASHTAELTFMLPAD 419
Query: 405 -SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
+ V ++ I M+ + + + ++ +L+ L E D RN ++L+E +
Sbjct: 420 FAGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVESDRARNIQLLKERSW 479
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
D+P+ Y + ++ + I+KG G F A W
Sbjct: 480 FDVPLVYTNQRRAIIAIEKGSPGDRAFADAFAAW 513
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGEARRALYERARSALIAQLRGVQPPLSESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKE 80
A+ +VE + + + +DKE
Sbjct: 61 AVRKVESEAAQRAREATRDKE 81
>gi|240850015|ref|YP_002971408.1| putative transmembrane protein [Bartonella grahamii as4aup]
gi|240267138|gb|ACS50726.1| putative transmembrane protein [Bartonella grahamii as4aup]
Length = 473
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 31/243 (12%)
Query: 265 IRPKITRRLLEDGSEVDVG-PSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGN 323
++ K+T+RLLEDGSE+DVG +D S + N D+
Sbjct: 236 VKRKLTQRLLEDGSEIDVGLKQATDSSDEEGVSTVVSSNLQSLDK--------------- 280
Query: 324 PLIGEGRVFINKGRGQSS-ILSGKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSAS 378
+GE + + + I +G + W+L +E +KG I+GDI + D S
Sbjct: 281 --LGEAVFYQARTNYDAEKIATGSVRWTLIKESY--VKGAPEETAIQGDITIPDEGLSLR 336
Query: 379 MTLKCNADISLSITHVMEIMFSFP-KESQDAVVDLRRISMRKTDNS-PSVLIDSNIFVIS 436
+ L+ N D + ++M+++F K S A+ ++ ++ + ++ S L+ + I+
Sbjct: 337 LILRRNTDRTFPAAYIMDLIFILSDKFSGKAISSVQALTFKASEQSIGQPLVRTISTKIN 396
Query: 437 KNSYLISLKGSEEDPF--RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAI 494
+ +L++L S+ PF RN +++ E ++ + +T ++G+ T KG G IF I
Sbjct: 397 DDFFLVAL--SDNHPFLDRNLQLMRELDWVRLVLTDKNGRINELTFAKGPTGESIFNKVI 454
Query: 495 MQW 497
QW
Sbjct: 455 GQW 457
>gi|170744870|ref|YP_001773525.1| hypothetical protein M446_6846 [Methylobacterium sp. 4-46]
gi|168199144|gb|ACA21091.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 414
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 344 SGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
+G+++W L + Q L+ V++ + + +M ++ N D +L +HV+E+ F+
Sbjct: 259 AGQVVWRLDAVNAGQGQPLQ-TVVRATAEAQEAGLTVAMVIRRNTDATLPASHVIELTFT 317
Query: 401 FPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
P + V D+ + + +++ + + +N +LI L + D RN+ ++
Sbjct: 318 -PTDPSRNVRDVGLLQFKDDESARGSPVSGLPVPVRENIFLIGLSNLKGDIERNTDLMLR 376
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ID+PI Y SG + + T +KG G + + A QW
Sbjct: 377 RNWIDLPIRYASGGRAILTFEKGSAGDRVMREAFEQW 413
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P+ R +YE AR ++ +L S+ P L +E ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPDMREAVYERARAALTGQLRSLDPPLSEEDIDAERRSLDAA 60
Query: 61 ILQVEKQ 67
I ++E +
Sbjct: 61 IGRLEDE 67
>gi|298292947|ref|YP_003694886.1| hypothetical protein Snov_2991 [Starkeya novella DSM 506]
gi|296929458|gb|ADH90267.1| conserved hypothetical protein [Starkeya novella DSM 506]
Length = 490
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 345 GKILWSLQQEKSQGLKGLV----IKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G + WS E+S G G I+ DI + SA++TL+ N D S+ +H++E+ F
Sbjct: 320 GTVKWST--ERSPGSAGTAPDVGIRADITIPARDISATLTLRRNQDTSIPASHIIEVQFK 377
Query: 401 FPKE----SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSK 456
P + V +R + +P V + ++ + +LI L + D RN
Sbjct: 378 LPPNFDLGNVSNVPGMRAKASESAQGAPLVGL---AVRVAPSYFLIGLSALDSDIQRNLS 434
Query: 457 ILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
L ++D+PI + +G++ + ++KG+ G F+ A W
Sbjct: 435 FLITRNWLDLPIVFENGRRAILVLEKGEAGDQAFRQAFSAW 475
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ LP+ + E R +YE AR ++ +L +++P LP++ +ER+ LE A
Sbjct: 1 MADYYPLLARAIGGLPDKSAEARKAVYERARRALTAQLRAVEPPLPEDDVEREQQALENA 60
Query: 61 ILQVE 65
I ++E
Sbjct: 61 IRRIE 65
>gi|254504629|ref|ZP_05116780.1| hypothetical protein SADFL11_4668 [Labrenzia alexandrii DFL-11]
gi|222440700|gb|EEE47379.1| hypothetical protein SADFL11_4668 [Labrenzia alexandrii DFL-11]
Length = 580
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 345 GKILWSLQQEKSQGLKGL-VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK 403
G ++W+L +E G + V+ + + + + +K N D SL +H++EI + P+
Sbjct: 423 GAVIWTLGEETDLGGEAQSVLSAAVEIPERDIKVDIRIKPNDDTSLPASHLVEIKYELPE 482
Query: 404 E-SQDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
S +V++ + M+ T+ + LI +++ V S + I+L + RN +L E
Sbjct: 483 GFSGGDIVNVPGLVMKPTEEARGDALIGASVKV-SPGFFWIALSSLPNEQQRNLALLRER 541
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+IDIP+ Y +G++ + T++KG G D + A+ W+
Sbjct: 542 GWIDIPMLYENGKRGILTLEKGPIGEDAVEKAVSAWQ 578
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL-PKEILERQFNKLEQ 59
M D+ ++++ + +LPE+ R +Y ARN++ +L++ +P L P EI Q +LE+
Sbjct: 1 MADYYSILKKTIASLPESNGAARRSVYSRARNAIVNQLKAYEPPLSPSEITAEQL-RLEE 59
Query: 60 AILQVEKQ 67
AI +VE +
Sbjct: 60 AIRKVEAE 67
>gi|146337477|ref|YP_001202525.1| hypothetical protein BRADO0322 [Bradyrhizobium sp. ORS278]
gi|146190283|emb|CAL74279.1| hypothetical protein; putative exported protein [Bradyrhizobium sp.
ORS278]
Length = 484
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 344 SGKILWSLQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF 401
+G + W ++ KS G VI+ +I + D A++ L+ N D +L +HV E+ F+
Sbjct: 321 TGSVTWRMETIKSPQSGRAVPVIRAEIDVPDRKLKATLQLRRNDDPTLPASHVAELTFAR 380
Query: 402 PKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
+ + + ++ I M+ + + + +++ S+L+ L + D RN ++L
Sbjct: 381 ADDFAGGGINNVPGILMKSNEQARGTPLAGLAVKVTEGSFLVGLSNVDADRARNGELLAG 440
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+ DIP+ Y + ++ + I KG G +F W+
Sbjct: 441 REWFDIPLVYSNQRRGILAIGKGPSGDRVFADVFAAWD 478
>gi|296446632|ref|ZP_06888573.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296255860|gb|EFH02946.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 408
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 345 GKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSF- 401
G ++W L+ S + L I+GDI + A++ ++ N D +LS +H + + F F
Sbjct: 251 GTVIWRLESLPSGAEQALTPAIRGDIDIPGAKMKAALVIQKNFDPALSASHTINVSFQFA 310
Query: 402 PKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL-KGSEEDPFRNSKILEE 460
P V + + MR+ + I + I++N++L+ L G+ E RN +L
Sbjct: 311 PGGELKGVKTIAPLQMRRPEAQSGEQISGVLVPITENNFLLGLLPGNPE--ARNLTLLRA 368
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENR 500
ID+P+ +G+ ++KG G +F A+ W +
Sbjct: 369 PLIIDLPMQLENGRAATIALEKGPAGERVFLDALDAWAGK 408
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RAV +LP++ PE R +YE AR ++ ++L S++P + + +E + L++A
Sbjct: 1 MADYYSLLSRAVASLPQSAPESRQAVYERARKALFKQLRSIQPPVAEGDIESEGRALDEA 60
Query: 61 ILQVE 65
I +VE
Sbjct: 61 IARVE 65
>gi|170752007|ref|YP_001758267.1| putative CheA signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
gi|170658529|gb|ACB27584.1| putative CheA signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
Length = 496
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 338 GQSSILSGKILWSLQQ---EKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHV 394
GQ ++ G++ W L+ ++ Q ++ VI + + D + MT++ N D +L +H
Sbjct: 332 GQPTVTPGRVTWRLESVNGDQGQPVQNAVIA-TVTIPDAGLTLVMTIQRNLDATLPASHT 390
Query: 395 MEIMFSFPKE--SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
+ + FS + V D+ + + ++ + + N +LI L + D
Sbjct: 391 VSLAFSQTGSNGASRTVQDVGLLQAKDEQSARGSPVSGLPVRVRDNLFLIGLSSLQNDVE 450
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
RN+ +L + DI + Y SG++ + T +KG GA + ++A W+
Sbjct: 451 RNTDLLLHRNWFDIALRYTSGRRAVLTFEKGAAGAQVMQNAFDAWQ 496
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ TP R +Y+ ARN++ +L S+ P L + ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRTPALRKAVYDRARNALISQLRSLDPPLSEADIDLERRALDAA 60
Query: 61 ILQVE 65
I ++E
Sbjct: 61 IERLE 65
>gi|154243994|ref|YP_001414952.1| hypothetical protein Xaut_0036 [Xanthobacter autotrophicus Py2]
gi|154158079|gb|ABS65295.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
Length = 460
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 336 GRGQSSILSGKILWSLQQ-EKSQGLK-GLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
G Q + G ++W + GL + ++GD+ + + + S L+ N D +L +H
Sbjct: 276 GGAQPQVFEGTVVWKTETVNAGPGLPPDIGLRGDVVIPERKINMSFVLRRNTDQTLPASH 335
Query: 394 VMEIMFSFPKESQ-DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
+EI F P + V ++ + M+ + + ++ +L+ L D
Sbjct: 336 TIEIGFKLPDDFPFGGVSNVDAVRMKPNQQALGTPLAGLAVRVNPTLFLVGLSEKPADRQ 395
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN +L+ Y ++D ITY + +K + +KG G F A W
Sbjct: 396 RNVTLLQAYPWLDTLITYTNNKKAVLAFEKGPAGEQAFNDAFSAW 440
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ +LP+ T E R +Y+ AR ++ R+L + P LP+ + R+ LE+A
Sbjct: 1 MADYYPLLVRAISSLPQKTGEGRRAVYDRARTALMRQLRGVDPPLPEGEITRERMSLEEA 60
Query: 61 ILQVE---KQNQKSLHTSKQDKES 81
I +VE Q S T + + E+
Sbjct: 61 IRRVEADYAQQDNSADTVEDEAEA 84
>gi|188580209|ref|YP_001923654.1| hypothetical protein Mpop_0941 [Methylobacterium populi BJ001]
gi|179343707|gb|ACB79119.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 493
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 337 RGQSSILSGKILWSLQQEKSQGLKG----LVIKGDIPMIDNAFSASMTLKCNADISLSIT 392
R Q +G +W + E G +G V++ ++ + +MT++ N D +L +
Sbjct: 327 RAQPIATNGNAVW--RTEAVNGGQGEPLQTVLRVNVEFPSAGLTLAMTMRKNLDANLPAS 384
Query: 393 HVMEIMFSFPKES--QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEED 450
H +E+ F+ E+ + AV ++ + ++ + + + + +N +LI L + D
Sbjct: 385 HTIELAFTNSGEAGAKRAVQNIGLLQLKDEEAARGSPVSGLPVRVRENLFLIGLSSLKGD 444
Query: 451 PFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN+++L ++D+ +TY GQ+ + + +KG GA +SA QW
Sbjct: 445 VDRNTELLLHKNWLDLALTYADGQRAVISFEKGGAGAQAVQSAFTQW 491
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPETDIDLERQALDTA 60
Query: 61 I 61
I
Sbjct: 61 I 61
>gi|218459713|ref|ZP_03499804.1| putative transmembrane protein [Rhizobium etli Kim 5]
Length = 103
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 408 AVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIP 467
++ ++RISM++T+ + + I+ + ++I+L + N ++ +IDIP
Sbjct: 4 SIESVQRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIP 63
Query: 468 ITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
ITYR+G++ L T++KG G D F +AI +W
Sbjct: 64 ITYRNGRRALLTMEKGGTGTDAFNTAIKEW 93
>gi|260467080|ref|ZP_05813260.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259029189|gb|EEW30485.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 318
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 22/122 (18%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +DNL + +PE R+ +Y+ AR+++A ++ P L +Q LE A
Sbjct: 1 MADFVAVLKKTIDNLSDQSPEMRARVYDKARSTIAAKIALRDPPLSPSDAAKQKRGLEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILR----SNKHKKLA 116
I VE+ KS+ E+D + ENIF SSI R SN ++ A
Sbjct: 61 ISSVERDYTKSV------PETD----PLAELENIF--------SSIDRNKNQSNHTRQPA 102
Query: 117 NI 118
N+
Sbjct: 103 NV 104
>gi|218462972|ref|ZP_03503063.1| hypothetical protein RetlK5_27598 [Rhizobium etli Kim 5]
Length = 103
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 413 RRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRS 472
+RISM++T+ + + I+ + ++I+L + N ++ +IDIPITYR+
Sbjct: 9 QRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRN 68
Query: 473 GQKILFTIDKGKKGADIFKSAIMQW 497
G++ L T++KG G D F +AI +W
Sbjct: 69 GRRALLTMEKGGTGTDAFNTAIKEW 93
>gi|323137337|ref|ZP_08072415.1| hypothetical protein Met49242DRAFT_1803 [Methylocystis sp. ATCC
49242]
gi|322397324|gb|EFX99847.1| hypothetical protein Met49242DRAFT_1803 [Methylocystis sp. ATCC
49242]
Length = 413
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Query: 342 ILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF 399
I + ++W L+ + + I+GD+ + D ++ + N D +LS +H + + F
Sbjct: 254 IYNANVVWRLENVGGGPGEPVGSAIRGDVDIPDAKLKLTLLFRKNTDTALSASHTINVTF 313
Query: 400 S-FPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL-KGSEEDPFRNSKI 457
+ P V + I MR+ D + I++N++LI L +G E RN +
Sbjct: 314 TPAPGSPVGGVKAIGPIQMRRVDAQSGEKVAGIPVPITENNFLIGLMRGDREQ--RNVTL 371
Query: 458 LEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
L +D+P+ + G+ ++KG G +F AI W
Sbjct: 372 LRSLPLLDLPMQFNDGRAATINMEKGATGERVFADAIDAW 411
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ +I RA+ LP+ T E R +YE AR ++ +L +++P + + + + LE+A
Sbjct: 1 MADYYSLISRAISALPQPTTEARQAVYERARKALVNQLRNIQPPVAEADIAAEGRALEEA 60
Query: 61 ILQVE 65
I ++E
Sbjct: 61 ITRLE 65
>gi|146342453|ref|YP_001207501.1| hypothetical protein BRADO5612 [Bradyrhizobium sp. ORS278]
gi|146195259|emb|CAL79284.1| hypothetical protein BRADO5612 [Bradyrhizobium sp. ORS278]
Length = 273
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 44/66 (66%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
D+ +++ RA++NLPE++ ERR+ +Y+ AR ++ +LE+M P + + ++ + L+ A+
Sbjct: 26 ADYFILLSRAMENLPESSAERRAEVYQSARQALVSQLEAMHPPVSRSRIKAEQRALDDAV 85
Query: 62 LQVEKQ 67
+E +
Sbjct: 86 DTIETR 91
>gi|23008316|ref|ZP_00049812.1| hypothetical protein Magn03003422 [Magnetospirillum magnetotacticum
MS-1]
Length = 124
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 386 DISLSITHVMEIMFSFPKESQDAVV-DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL 444
D +L +H +E+ F+ +V ++ + ++ +++ + + N +LI L
Sbjct: 10 DATLPASHTIELAFTNSDSGAKRIVQNIGLLQLKDEESARGSPVSGLPVRVRDNLFLIGL 69
Query: 445 KGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+ D RN+ +L ++D+ +TY +GQ+ + + +KG GA ++A QW +
Sbjct: 70 SSLKSDIDRNTDLLLHKNWLDLAVTYTNGQRAVISFEKGNAGAQAMQNAFAQWRD 124
>gi|217977190|ref|YP_002361337.1| hypothetical protein Msil_1006 [Methylocella silvestris BL2]
gi|217502566|gb|ACK49975.1| hypothetical protein Msil_1006 [Methylocella silvestris BL2]
Length = 634
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 379 MTLKCNADISLSITHVMEIMFSFPKESQDAVV-DLRRIS---MRKTDNSPSVLIDSNIFV 434
MTL+ N D SL +H M+I F E D+ + +++IS MR D + ++
Sbjct: 513 MTLQKNFDSSLPASHTMKIQFI---EGADSPLGSVQQISVPQMRLEDTATGDALNGVPVQ 569
Query: 435 ISKNSYLISL-KGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSA 493
I+ N++L+ L GS E N +L+ +ID+PI +G+ T +KG G A
Sbjct: 570 ITDNTFLVGLTSGSPE--AGNLDLLKSRGWIDVPILLSNGKIAKLTFEKGPAGDRAIDDA 627
Query: 494 IMQWENR 500
I W+ +
Sbjct: 628 IAAWKGQ 634
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RAV L + TP+ RS IY+ ARN++ +L + P + E ++R+ LE A
Sbjct: 1 MADYYPLLARAVAGLADPTPQARSAIYDRARNALLGQLRRLDPPIADEEIDRESVALEDA 60
Query: 61 ILQVE 65
+ ++E
Sbjct: 61 VARLE 65
>gi|148257382|ref|YP_001241967.1| hypothetical protein BBta_6136 [Bradyrhizobium sp. BTAi1]
gi|146409555|gb|ABQ38061.1| hypothetical protein BBta_6136 [Bradyrhizobium sp. BTAi1]
Length = 277
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 44/66 (66%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
D+ +++ RA++NLP++ ERR+ +Y+ AR+++ +LE+M P + + ++ + L+ A+
Sbjct: 26 ADYFILLSRAMENLPDSNAERRAEVYQSARHALLTQLEAMNPPVSRSRIKAEQRALDDAV 85
Query: 62 LQVEKQ 67
+E +
Sbjct: 86 ETIETR 91
>gi|218658407|ref|ZP_03514337.1| hypothetical protein RetlI_01427 [Rhizobium etli IE4771]
Length = 50
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 463 FIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+IDIPITYR+G++ L T++KG G D F +AI +W
Sbjct: 6 WIDIPITYRNGRRALLTMEKGGTGTDAFNTAIKEW 40
>gi|46205078|ref|ZP_00049064.2| hypothetical protein Magn03002378 [Magnetospirillum
magnetotacticum MS-1]
Length = 303
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERQALDTA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPK 85
I ++E + + + T+ ++ E P+
Sbjct: 61 IQRLETEYEPA--TASKEPEVAPPQ 83
>gi|223996225|ref|XP_002287786.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976902|gb|EED95229.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 430
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 113 KKLANILSVQGKSR-TNTNLSPKNFSCRL-REILSFSVNTQHEYDSSVS-----PVAAIE 165
+KLA +L G+S+ L+ F+CRL R++L + T+ + D S P I+
Sbjct: 81 EKLALLLCQSGRSKKAKKGLAAMGFTCRLSRQVLDYPT-TEVQSDGSTEEDKPPPCQIID 139
Query: 166 HDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSE 211
+ + +L +F PT S +W++HNY S+ LSE
Sbjct: 140 GFLTTMEVERLQSVFESPTAS-YWTLHNYAVEPPSPYFSYVIQLSE 184
>gi|293405264|ref|ZP_06649256.1| protease 4 [Escherichia coli FVEC1412]
gi|298380907|ref|ZP_06990506.1| protease IV [Escherichia coli FVEC1302]
gi|300898997|ref|ZP_07117286.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
gi|291427472|gb|EFF00499.1| protease 4 [Escherichia coli FVEC1412]
gi|298278349|gb|EFI19863.1| protease IV [Escherichia coli FVEC1302]
gi|300357394|gb|EFJ73264.1| signal peptide peptidase SppA [Escherichia coli MS 198-1]
Length = 666
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|9626608|ref|NP_040898.1| hypothetical protein HpV63gp3 [Human papillomavirus type 63]
gi|586217|sp|Q07847|VE1_HPV63 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
gi|312095|emb|CAA50166.1| unnamed protein product [Human papillomavirus type 63]
Length = 618
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 28 EHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSS 87
E NS+ R ES L + + Q N LE LQ QN++ L+T K+ + P++S
Sbjct: 31 EDTYNSLFNRSESDISDLLDDTQQSQGNSLELFHLQEHLQNEQDLNTLKRKYLNSPPQAS 90
Query: 88 VTSKENIFLEPRLRSISSILRSNKHKK 114
T L PRL SI+ R K +K
Sbjct: 91 ATETACNSLSPRLESITISQREKKARK 117
>gi|300924815|ref|ZP_07140755.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
gi|301327503|ref|ZP_07220736.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
gi|309793539|ref|ZP_07687966.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
gi|331653170|ref|ZP_08354175.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
gi|300419022|gb|EFK02333.1| signal peptide peptidase SppA [Escherichia coli MS 182-1]
gi|300845934|gb|EFK73694.1| signal peptide peptidase SppA [Escherichia coli MS 78-1]
gi|308123126|gb|EFO60388.1| signal peptide peptidase SppA [Escherichia coli MS 145-7]
gi|323378358|gb|ADX50626.1| signal peptide peptidase SppA, 67K type [Escherichia coli KO11]
gi|331049268|gb|EGI21340.1| signal peptide peptidase SppA, 67K type [Escherichia coli M718]
Length = 666
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|293415083|ref|ZP_06657726.1| signal peptide peptidase SppA [Escherichia coli B185]
gi|291432731|gb|EFF05710.1| signal peptide peptidase SppA [Escherichia coli B185]
Length = 666
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|300818408|ref|ZP_07098618.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
gi|300529048|gb|EFK50110.1| signal peptide peptidase SppA [Escherichia coli MS 107-1]
Length = 666
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|293446138|ref|ZP_06662560.1| signal peptide peptidase SppA [Escherichia coli B088]
gi|300823176|ref|ZP_07103309.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
gi|331677647|ref|ZP_08378322.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
gi|291322968|gb|EFE62396.1| signal peptide peptidase SppA [Escherichia coli B088]
gi|300524330|gb|EFK45399.1| signal peptide peptidase SppA [Escherichia coli MS 119-7]
gi|324016441|gb|EGB85660.1| signal peptide peptidase SppA [Escherichia coli MS 117-3]
gi|331074107|gb|EGI45427.1| signal peptide peptidase SppA, 67K type [Escherichia coli H591]
Length = 666
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|320184010|gb|EFW58833.1| Protease IV [Shigella flexneri CDC 796-83]
gi|332096360|gb|EGJ01361.1| signal peptide peptidase SppA, 67K type [Shigella boydii 3594-74]
Length = 618
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDHNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|300930753|ref|ZP_07146126.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
gi|300461386|gb|EFK24879.1| signal peptide peptidase SppA [Escherichia coli MS 187-1]
Length = 666
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|218705264|ref|YP_002412783.1| protease 4 [Escherichia coli UMN026]
gi|218432361|emb|CAR13251.1| protease IV (signal peptide peptidase) [Escherichia coli UMN026]
Length = 618
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|157158760|ref|YP_001463065.1| protease 4 [Escherichia coli E24377A]
gi|157080790|gb|ABV20498.1| protease 4 [Escherichia coli E24377A]
Length = 618
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|300951371|ref|ZP_07165213.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
gi|300958660|ref|ZP_07170784.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
gi|301647962|ref|ZP_07247737.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
gi|331642370|ref|ZP_08343505.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
gi|300314711|gb|EFJ64495.1| signal peptide peptidase SppA [Escherichia coli MS 175-1]
gi|300449361|gb|EFK12981.1| signal peptide peptidase SppA [Escherichia coli MS 116-1]
gi|301073933|gb|EFK88739.1| signal peptide peptidase SppA [Escherichia coli MS 146-1]
gi|331039168|gb|EGI11388.1| signal peptide peptidase SppA, 67K type [Escherichia coli H736]
Length = 666
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 52 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 107
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 108 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 163
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 164 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 212
>gi|222033518|emb|CAP76259.1| Protease 4 [Escherichia coli LF82]
gi|312946365|gb|ADR27192.1| protease 4 [Escherichia coli O83:H1 str. NRG 857C]
Length = 618
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|218689707|ref|YP_002397919.1| protease 4 [Escherichia coli ED1a]
gi|218427271|emb|CAR08161.2| protease IV (signal peptide peptidase) [Escherichia coli ED1a]
Length = 618
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|331683273|ref|ZP_08383874.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
gi|331079488|gb|EGI50685.1| signal peptide peptidase SppA, 67K type [Escherichia coli H299]
Length = 618
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|194438574|ref|ZP_03070663.1| protease 4 [Escherichia coli 101-1]
gi|194422584|gb|EDX38582.1| protease 4 [Escherichia coli 101-1]
gi|323937024|gb|EGB33304.1| signal peptide peptidase SppA [Escherichia coli E1520]
gi|323962014|gb|EGB57612.1| signal peptide peptidase SppA [Escherichia coli H489]
gi|323972549|gb|EGB67753.1| signal peptide peptidase SppA [Escherichia coli TA007]
Length = 622
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|193068967|ref|ZP_03049926.1| protease 4 [Escherichia coli E110019]
gi|192957762|gb|EDV88206.1| protease 4 [Escherichia coli E110019]
Length = 622
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|330911571|gb|EGH40081.1| protease 4 [Escherichia coli AA86]
Length = 622
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|281178836|dbj|BAI55166.1| protease IV [Escherichia coli SE15]
Length = 618
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|147868|gb|AAA24648.1| protease IV [Escherichia coli]
Length = 618
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|301026499|ref|ZP_07189929.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
gi|300395517|gb|EFJ79055.1| signal peptide peptidase SppA [Escherichia coli MS 69-1]
Length = 618
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|301020953|ref|ZP_07185005.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
gi|299881708|gb|EFI89919.1| signal peptide peptidase SppA [Escherichia coli MS 196-1]
Length = 622
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|332343487|gb|AEE56821.1| signal peptide peptidase SppA [Escherichia coli UMNK88]
Length = 618
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|256018039|ref|ZP_05431904.1| protease 4 [Shigella sp. D9]
gi|332279079|ref|ZP_08391492.1| protease IV (signal peptide peptidase) [Shigella sp. D9]
gi|332101431|gb|EGJ04777.1| protease IV (signal peptide peptidase) [Shigella sp. D9]
Length = 618
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|331668455|ref|ZP_08369303.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
gi|331063649|gb|EGI35560.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA271]
Length = 622
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|117623937|ref|YP_852850.1| protease 4 [Escherichia coli APEC O1]
gi|218558634|ref|YP_002391547.1| protease 4 [Escherichia coli S88]
gi|237705717|ref|ZP_04536198.1| protease IV [Escherichia sp. 3_2_53FAA]
gi|115513061|gb|ABJ01136.1| protease IV [Escherichia coli APEC O1]
gi|218365403|emb|CAR03126.1| protease IV (signal peptide peptidase) [Escherichia coli S88]
gi|226900474|gb|EEH86733.1| protease IV [Escherichia sp. 3_2_53FAA]
gi|315286440|gb|EFU45875.1| signal peptide peptidase SppA [Escherichia coli MS 110-3]
gi|323952272|gb|EGB48145.1| signal peptide peptidase SppA [Escherichia coli H252]
gi|323956534|gb|EGB52275.1| signal peptide peptidase SppA [Escherichia coli H263]
Length = 618
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|323186216|gb|EFZ71568.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1357]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|253773279|ref|YP_003036110.1| protease 4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254161824|ref|YP_003044932.1| protease 4 [Escherichia coli B str. REL606]
gi|297519580|ref|ZP_06937966.1| protease 4 [Escherichia coli OP50]
gi|242377487|emb|CAQ32240.1| protease IV, subunit of protease IV, a signal peptide peptidase
[Escherichia coli BL21(DE3)]
gi|253324323|gb|ACT28925.1| signal peptide peptidase SppA, 67K type [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973725|gb|ACT39396.1| protease IV (signal peptide peptidase) [Escherichia coli B str.
REL606]
gi|253977919|gb|ACT43589.1| protease IV (signal peptide peptidase) [Escherichia coli BL21(DE3)]
gi|309701988|emb|CBJ01302.1| protease IV [Escherichia coli ETEC H10407]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|74311916|ref|YP_310335.1| protease 4 [Shigella sonnei Ss046]
gi|73855393|gb|AAZ88100.1| protease IV, a signal peptide peptidase [Shigella sonnei Ss046]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|157161228|ref|YP_001458546.1| protease 4 [Escherichia coli HS]
gi|170019887|ref|YP_001724841.1| protease 4 [Escherichia coli ATCC 8739]
gi|312969795|ref|ZP_07783978.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
gi|157066908|gb|ABV06163.1| protease 4 [Escherichia coli HS]
gi|169754815|gb|ACA77514.1| signal peptide peptidase SppA, 67K type [Escherichia coli ATCC
8739]
gi|310338080|gb|EFQ03169.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1827-70]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|187733275|ref|YP_001880563.1| protease 4 [Shigella boydii CDC 3083-94]
gi|194428542|ref|ZP_03061081.1| protease 4 [Escherichia coli B171]
gi|194433484|ref|ZP_03065762.1| protease 4 [Shigella dysenteriae 1012]
gi|260844115|ref|YP_003221893.1| protease IV [Escherichia coli O103:H2 str. 12009]
gi|260855631|ref|YP_003229522.1| protease IV [Escherichia coli O26:H11 str. 11368]
gi|260868291|ref|YP_003234693.1| protease IV [Escherichia coli O111:H- str. 11128]
gi|307310662|ref|ZP_07590308.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
gi|187430267|gb|ACD09541.1| protease 4 [Shigella boydii CDC 3083-94]
gi|194413420|gb|EDX29703.1| protease 4 [Escherichia coli B171]
gi|194418247|gb|EDX34338.1| protease 4 [Shigella dysenteriae 1012]
gi|209768378|gb|ACI82501.1| protease IV [Escherichia coli]
gi|257754280|dbj|BAI25782.1| protease IV [Escherichia coli O26:H11 str. 11368]
gi|257759262|dbj|BAI30759.1| protease IV [Escherichia coli O103:H2 str. 12009]
gi|257764647|dbj|BAI36142.1| protease IV [Escherichia coli O111:H- str. 11128]
gi|306908840|gb|EFN39336.1| signal peptide peptidase SppA, 67K type [Escherichia coli W]
gi|315061069|gb|ADT75396.1| protease IV (signal peptide peptidase) [Escherichia coli W]
gi|320176722|gb|EFW51758.1| Protease IV [Shigella dysenteriae CDC 74-1112]
gi|320641615|gb|EFX11003.1| protease 4 [Escherichia coli O157:H7 str. G5101]
gi|320646975|gb|EFX15808.1| protease 4 [Escherichia coli O157:H- str. 493-89]
gi|320652257|gb|EFX20555.1| protease 4 [Escherichia coli O157:H- str. H 2687]
gi|320657858|gb|EFX25620.1| protease 4 [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320668330|gb|EFX35157.1| protease 4 [Escherichia coli O157:H7 str. LSU-61]
gi|323152988|gb|EFZ39257.1| signal peptide peptidase SppA, 67K type [Escherichia coli EPECa14]
gi|323158527|gb|EFZ44542.1| signal peptide peptidase SppA, 67K type [Escherichia coli E128010]
gi|323166270|gb|EFZ52045.1| signal peptide peptidase SppA, 67K type [Shigella sonnei 53G]
gi|323175160|gb|EFZ60774.1| signal peptide peptidase SppA, 67K type [Escherichia coli LT-68]
gi|323180545|gb|EFZ66090.1| signal peptide peptidase SppA, 67K type [Escherichia coli 1180]
gi|323948173|gb|EGB44162.1| signal peptide peptidase SppA [Escherichia coli H120]
gi|324119252|gb|EGC13140.1| signal peptide peptidase SppA [Escherichia coli E1167]
gi|332085809|gb|EGI90973.1| signal peptide peptidase SppA, 67K type [Shigella dysenteriae
155-74]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|26248024|ref|NP_754064.1| protease 4 [Escherichia coli CFT073]
gi|91210983|ref|YP_540969.1| protease 4 [Escherichia coli UTI89]
gi|110641888|ref|YP_669618.1| protease 4 [Escherichia coli 536]
gi|215486982|ref|YP_002329413.1| protease 4 [Escherichia coli O127:H6 str. E2348/69]
gi|218699668|ref|YP_002407297.1| protease 4 [Escherichia coli IAI39]
gi|300938898|ref|ZP_07153600.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
gi|300975717|ref|ZP_07173137.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
gi|300994367|ref|ZP_07180872.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
gi|301050891|ref|ZP_07197742.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
gi|312966966|ref|ZP_07781184.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
gi|331657804|ref|ZP_08358766.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
gi|26108427|gb|AAN80629.1|AE016761_204 Protease IV [Escherichia coli CFT073]
gi|91072557|gb|ABE07438.1| protease IV, a signal peptide peptidase [Escherichia coli UTI89]
gi|110343480|gb|ABG69717.1| protease IV [Escherichia coli 536]
gi|215265054|emb|CAS09441.1| protease IV (signal peptide peptidase) [Escherichia coli O127:H6
str. E2348/69]
gi|218369654|emb|CAR17423.1| protease IV (signal peptide peptidase) [Escherichia coli IAI39]
gi|294489545|gb|ADE88301.1| protease 4 [Escherichia coli IHE3034]
gi|300297410|gb|EFJ53795.1| signal peptide peptidase SppA [Escherichia coli MS 185-1]
gi|300308679|gb|EFJ63199.1| signal peptide peptidase SppA [Escherichia coli MS 200-1]
gi|300406213|gb|EFJ89751.1| signal peptide peptidase SppA [Escherichia coli MS 45-1]
gi|300456158|gb|EFK19651.1| signal peptide peptidase SppA [Escherichia coli MS 21-1]
gi|307553787|gb|ADN46562.1| protease IV [Escherichia coli ABU 83972]
gi|307626750|gb|ADN71054.1| protease 4 [Escherichia coli UM146]
gi|312288430|gb|EFR16332.1| signal peptide peptidase SppA, 67K type [Escherichia coli 2362-75]
gi|315290471|gb|EFU49846.1| signal peptide peptidase SppA [Escherichia coli MS 153-1]
gi|315299847|gb|EFU59087.1| signal peptide peptidase SppA [Escherichia coli MS 16-3]
gi|324007104|gb|EGB76323.1| signal peptide peptidase SppA [Escherichia coli MS 57-2]
gi|324011509|gb|EGB80728.1| signal peptide peptidase SppA [Escherichia coli MS 60-1]
gi|331056052|gb|EGI28061.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA206]
Length = 618
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|193065780|ref|ZP_03046843.1| protease 4 [Escherichia coli E22]
gi|192926552|gb|EDV81183.1| protease 4 [Escherichia coli E22]
gi|320197951|gb|EFW72559.1| Protease IV [Escherichia coli EC4100B]
Length = 622
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|291282945|ref|YP_003499763.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
gi|209768384|gb|ACI82504.1| protease IV [Escherichia coli]
gi|290762818|gb|ADD56779.1| Protease 4 [Escherichia coli O55:H7 str. CB9615]
gi|320658432|gb|EFX26126.1| protease 4 [Escherichia coli O55:H7 str. USDA 5905]
Length = 618
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|188493917|ref|ZP_03001187.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
gi|188489116|gb|EDU64219.1| signal peptide peptidase SppA, 67K type [Escherichia coli 53638]
Length = 618
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEIEE-GNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDNGKPVYAVGE---NYSQGQYYLAS 164
>gi|191171758|ref|ZP_03033305.1| protease 4 [Escherichia coli F11]
gi|227885806|ref|ZP_04003611.1| S49 family peptidase IV [Escherichia coli 83972]
gi|190908088|gb|EDV67680.1| protease 4 [Escherichia coli F11]
gi|227837379|gb|EEJ47845.1| S49 family peptidase IV [Escherichia coli 83972]
Length = 622
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|306814983|ref|ZP_07449139.1| protease 4 [Escherichia coli NC101]
gi|305851631|gb|EFM52084.1| protease 4 [Escherichia coli NC101]
Length = 618
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|209919128|ref|YP_002293212.1| protease 4 [Escherichia coli SE11]
gi|218695325|ref|YP_002402992.1| protease 4 [Escherichia coli 55989]
gi|209912387|dbj|BAG77461.1| protease IV [Escherichia coli SE11]
gi|218352057|emb|CAU97794.1| protease IV (signal peptide peptidase) [Escherichia coli 55989]
Length = 618
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|30062971|ref|NP_837142.1| protease 4 [Shigella flexneri 2a str. 2457T]
gi|56479902|ref|NP_707347.2| protease 4 [Shigella flexneri 2a str. 301]
gi|110805427|ref|YP_688947.1| protease 4 [Shigella flexneri 5 str. 8401]
gi|30041220|gb|AAP16949.1| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
2457T]
gi|56383453|gb|AAN43054.2| protease IV, a signal peptide peptidase [Shigella flexneri 2a str.
301]
gi|110614975|gb|ABF03642.1| protease IV, a signal peptide peptidase [Shigella flexneri 5 str.
8401]
gi|281600872|gb|ADA73856.1| putative Periplasmic serine proteases (ClpP class) [Shigella
flexneri 2002017]
gi|313649199|gb|EFS13633.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2a str.
2457T]
gi|332758842|gb|EGJ89157.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2747-71]
gi|332759159|gb|EGJ89468.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-671]
gi|332767154|gb|EGJ97349.1| signal peptide peptidase SppA, 67K type [Shigella flexneri 2930-71]
gi|333003711|gb|EGK23247.1| signal peptide peptidase SppA, 67K type [Shigella flexneri VA-6]
gi|333004305|gb|EGK23836.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-218]
gi|333018322|gb|EGK37621.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-304]
Length = 618
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|332090582|gb|EGI95679.1| signal peptide peptidase SppA, 67K type [Shigella boydii 5216-82]
Length = 618
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|320194522|gb|EFW69153.1| Protease IV [Escherichia coli WV_060327]
Length = 618
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|15802177|ref|NP_288199.1| protease 4 [Escherichia coli O157:H7 EDL933]
gi|12515791|gb|AAG56752.1|AE005399_6 protease IV, a signal peptide peptidase [Escherichia coli O157:H7
str. EDL933]
Length = 618
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|15831726|ref|NP_310499.1| protease 4 [Escherichia coli O157:H7 str. Sakai]
gi|168749412|ref|ZP_02774434.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
gi|168762162|ref|ZP_02787169.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
gi|195937452|ref|ZP_03082834.1| protease 4 [Escherichia coli O157:H7 str. EC4024]
gi|208810557|ref|ZP_03252433.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
gi|209400845|ref|YP_002270837.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
gi|254793384|ref|YP_003078221.1| protease 4 [Escherichia coli O157:H7 str. TW14359]
gi|261227739|ref|ZP_05942020.1| protease 4 [Escherichia coli O157:H7 str. FRIK2000]
gi|261258095|ref|ZP_05950628.1| protease 4 [Escherichia coli O157:H7 str. FRIK966]
gi|13361939|dbj|BAB35895.1| protease IV [Escherichia coli O157:H7 str. Sakai]
gi|188016236|gb|EDU54358.1| protease 4 [Escherichia coli O157:H7 str. EC4113]
gi|189367493|gb|EDU85909.1| protease 4 [Escherichia coli O157:H7 str. EC4501]
gi|208725073|gb|EDZ74780.1| protease 4 [Escherichia coli O157:H7 str. EC4206]
gi|209162245|gb|ACI39678.1| protease 4 [Escherichia coli O157:H7 str. EC4115]
gi|209768380|gb|ACI82502.1| protease IV [Escherichia coli]
gi|209768382|gb|ACI82503.1| protease IV [Escherichia coli]
gi|209768386|gb|ACI82505.1| protease IV [Escherichia coli]
gi|254592784|gb|ACT72145.1| protease IV (signal peptide peptidase) [Escherichia coli O157:H7
str. TW14359]
gi|320188454|gb|EFW63116.1| Protease IV [Escherichia coli O157:H7 str. EC1212]
gi|326342134|gb|EGD65915.1| Protease IV [Escherichia coli O157:H7 str. 1044]
Length = 618
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|16129720|ref|NP_416280.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
substr. MG1655]
gi|89108605|ref|AP_002385.1| protease IV [Escherichia coli str. K-12 substr. W3110]
gi|170081423|ref|YP_001730743.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
substr. DH10B]
gi|238900980|ref|YP_002926776.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
gi|256022570|ref|ZP_05436435.1| protease 4 [Escherichia sp. 4_1_40B]
gi|307138425|ref|ZP_07497781.1| protease 4 [Escherichia coli H736]
gi|34395936|sp|P08395|SPPA_ECOLI RecName: Full=Protease 4; AltName: Full=Endopeptidase IV; AltName:
Full=Protease IV; AltName: Full=Signal peptide peptidase
gi|1742877|dbj|BAA15557.1| protease IV [Escherichia coli str. K12 substr. W3110]
gi|1788064|gb|AAC74836.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
substr. MG1655]
gi|169889258|gb|ACB02965.1| protease IV (signal peptide peptidase) [Escherichia coli str. K-12
substr. DH10B]
gi|238863289|gb|ACR65287.1| protease IV (signal peptide peptidase) [Escherichia coli BW2952]
gi|260449112|gb|ACX39534.1| signal peptide peptidase SppA, 67K type [Escherichia coli DH1]
gi|315136407|dbj|BAJ43566.1| protease 4 [Escherichia coli DH1]
gi|323940567|gb|EGB36758.1| signal peptide peptidase SppA [Escherichia coli E482]
Length = 618
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|170683467|ref|YP_001743483.1| protease 4 [Escherichia coli SMS-3-5]
gi|170521185|gb|ACB19363.1| protease 4 [Escherichia coli SMS-3-5]
Length = 622
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|333018733|gb|EGK38026.1| signal peptide peptidase SppA, 67K type [Shigella flexneri K-227]
Length = 618
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 164
>gi|323968532|gb|EGB63938.1| signal peptide peptidase SppA [Escherichia coli M863]
Length = 637
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGE---NYSQGQYYLAS 168
>gi|331647259|ref|ZP_08348353.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
gi|331044042|gb|EGI16178.1| signal peptide peptidase SppA, 67K type [Escherichia coli M605]
Length = 622
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|187776034|ref|ZP_02992803.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
gi|189010434|ref|ZP_03006318.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
gi|189402336|ref|ZP_03006680.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
gi|189403499|ref|ZP_03007105.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
gi|189405098|ref|ZP_03007686.1| protease 4 [Escherichia coli O157:H7 str. EC869]
gi|189406058|ref|ZP_03008051.1| protease 4 [Escherichia coli O157:H7 str. EC508]
gi|208816614|ref|ZP_03257734.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
gi|208818606|ref|ZP_03258926.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
gi|217328805|ref|ZP_03444886.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
gi|187769467|gb|EDU33311.1| protease 4 [Escherichia coli O157:H7 str. EC4196]
gi|189000232|gb|EDU69218.1| protease 4 [Escherichia coli O157:H7 str. EC4076]
gi|189356179|gb|EDU74598.1| protease 4 [Escherichia coli O157:H7 str. EC4401]
gi|189360401|gb|EDU78820.1| protease 4 [Escherichia coli O157:H7 str. EC4486]
gi|189372021|gb|EDU90437.1| protease 4 [Escherichia coli O157:H7 str. EC869]
gi|189376761|gb|EDU95177.1| protease 4 [Escherichia coli O157:H7 str. EC508]
gi|208730957|gb|EDZ79646.1| protease 4 [Escherichia coli O157:H7 str. EC4045]
gi|208738729|gb|EDZ86411.1| protease 4 [Escherichia coli O157:H7 str. EC4042]
gi|217318152|gb|EEC26579.1| protease 4 [Escherichia coli O157:H7 str. TW14588]
gi|326343685|gb|EGD67447.1| Protease IV [Escherichia coli O157:H7 str. 1125]
Length = 622
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGE---NYSQGQYYLAS 168
>gi|294788155|ref|ZP_06753398.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
gi|294483586|gb|EFG31270.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
Length = 316
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
+F + Q A D L TPE+ + IY R +VA E + K E+
Sbjct: 57 AEFAALTQAAKDKLANATPEQANEIYAEHRKAVAAATEEL-------------TKKEEKF 103
Query: 62 LQVEKQNQKSLHTSKQDKESDIPKSSVTSK 91
L + N+++ S+ + E IPK V ++
Sbjct: 104 LGEQYHNEENWQQSENEDEPSIPKGEVKAR 133
>gi|323978052|gb|EGB73138.1| signal peptide peptidase SppA [Escherichia coli TW10509]
Length = 622
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGE---NYSQGQYYLAS 168
>gi|327252883|gb|EGE64537.1| signal peptide peptidase SppA, 67K type [Escherichia coli STEC_7v]
Length = 618
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 4 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 59
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 60 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 115
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 116 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGE---NYSQGQYYLAS 164
>gi|331663248|ref|ZP_08364158.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
gi|331059047|gb|EGI31024.1| signal peptide peptidase SppA, 67K type [Escherichia coli TA143]
Length = 622
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 188 FWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
W FF T LL+F + E L +F+FL+ L+G+ I + S G SK + +
Sbjct: 8 LWRFIAGFFKWTWRLLNF---VREMVLNLFFIFLV-LVGVGIWMQVSGGDSKETASRGAL 63
Query: 248 RESLDGGNVDKKNV---FSGIRPKITRRL-------LEDGSEVDVGPSTIPVADFANTSN 297
+ G VDK + FS K++R+L L++ S D+ + D N +
Sbjct: 64 LLDISGVIVDKPDSSQRFS----KLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITG 119
Query: 298 IA--FKNYIGGDENSTFVLGK--KEI-EEGNPLIGEGRVFINKGRGQSSILS 344
I KN+ GGD+ S +GK KE + G P+ G N +GQ + S
Sbjct: 120 IVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAIGE---NYSQGQYYLAS 168
>gi|313240103|emb|CBY32456.1| unnamed protein product [Oikopleura dioica]
Length = 1681
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 28/138 (20%)
Query: 34 VARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTS--- 90
+A R+ P LP +++ + E+QN + +HT D S +P SS+ S
Sbjct: 509 LASRMSGSNPLLPASVVKTALS---------EQQNSEFVHTCAPDPRSHLPSSSLRSANE 559
Query: 91 KENIFLEPRLRSISSILRSNKHKKLANILSVQGKSR-----TNTNLSPK--NFSCRLREI 143
+++F +S L + L + V G++ ++T+LSPK N SC + EI
Sbjct: 560 TDSLF--------NSELSLSADDSLTEFIQVHGQTSSTDHPSHTSLSPKSSNTSC-ITEI 610
Query: 144 LSFSVNTQHEYDSSVSPV 161
++ E SS+ P+
Sbjct: 611 ITDDSFFTRETVSSLDPI 628
Searching..................................................done
Results from round 2
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040289|gb|ACT57085.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats.
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA
Sbjct: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS
Sbjct: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF
Sbjct: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG
Sbjct: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF
Sbjct: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK
Sbjct: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
Query: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT
Sbjct: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
Query: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI
Sbjct: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
Query: 481 DKGKKGADIFKSAIMQWENRSNN 503
DKGKKGADIFKSAIMQWENRSNN
Sbjct: 481 DKGKKGADIFKSAIMQWENRSNN 503
>gi|315121812|ref|YP_004062301.1| putative transmembrane protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495214|gb|ADR51813.1| putative transmembrane protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 500
Score = 532 bits (1369), Expect = e-149, Method: Composition-based stats.
Identities = 293/504 (58%), Positives = 381/504 (75%), Gaps = 8/504 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+LVIQRAVDNL ENTPE RSHIYE AR +V+R+LESM PR P++ILERQ +KLE+A
Sbjct: 1 MVDFVLVIQRAVDNLSENTPEMRSHIYERARVAVSRQLESMNPRTPRDILERQLSKLEKA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
ILQVE++N+K +D+ PKS V SK+N+FL RL SISSILR+ K K+ +I+S
Sbjct: 61 ILQVERKNKKFPRALDKDRVLLAPKSHVNSKKNVFLTSRLTSISSILRNRKRKRTVDIVS 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+G +T T+ +LR+IL S N Q ++ + + +IE++K+RLRR KL F
Sbjct: 121 TKGNKKTTTHR-----PYQLRDILHLSSNVQQGSNAQILSMESIEYNKNRLRRDKLLRKF 175
Query: 181 SFPTG-SIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
S + SIF+ + +YF NK R +SFY+AL E+H FK VFL++ LGM +G+SYS ++K
Sbjct: 176 SVSSSRSIFFLLQSYFSNKIRVFISFYTALLEYHFFKQSVFLVVFLGMMMGLSYSFWQNK 235
Query: 240 GSITHFLRRESLDGGNVDKKNVFS-GIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNI 298
S +H L + L+ + +KK + + G RPKITRRLL +GSEVD+G + + +NTSN+
Sbjct: 236 VSFSHILENKILNRDSDNKKVLHALGSRPKITRRLLANGSEVDMGTAISSPINSSNTSNV 295
Query: 299 AFKNYI-GGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQ 357
FKN+I D+ + +L +K+ NP+ +GRVFIN+G G+SSI +G I WSLQ+EK+Q
Sbjct: 296 FFKNHIDSNDQAVSHILERKKSGTENPIDEDGRVFINQGSGRSSIFAGNIFWSLQKEKTQ 355
Query: 358 GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISM 417
GLKGLVIKGDIP I+NAFSAS+TLKCNADI+LS+TH+MEI FSFPKESQ+++VDLR+ISM
Sbjct: 356 GLKGLVIKGDIPTINNAFSASITLKCNADIALSVTHLMEITFSFPKESQNSIVDLRQISM 415
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKIL 477
RKT+NSPS+LIDSNIF ISKNSYLISLKG ED RNSKILEEYR+IDIPITY SGQKI
Sbjct: 416 RKTENSPSILIDSNIFRISKNSYLISLKGDAEDFLRNSKILEEYRWIDIPITYHSGQKIT 475
Query: 478 FTIDKGKKGADIFKSAIMQWENRS 501
TIDKGK G+D+FKSA+M W++ S
Sbjct: 476 LTIDKGKVGSDVFKSAVMDWKDHS 499
>gi|319403702|emb|CBI77287.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 477
Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats.
Identities = 118/519 (22%), Positives = 225/519 (43%), Gaps = 63/519 (12%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M+DF+ +++ ++ + TP R IYEHA ++ + +MK LPKE +E Q + L+ A
Sbjct: 1 MIDFVGILKNKINAQKDITPRLRKQIYEHATKTLEHTIVNMK--LPKEAIEAQRSALQSA 58
Query: 61 ILQVEKQNQKSL-----------HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS 109
I VE++ T + E + +SS++S EN +S+L +
Sbjct: 59 ITIVEEEYLAVEKEQLSLIIGWNCTDRNSGEKN-EQSSISSLENN---------ASVLAT 108
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
K ++L+ V + ++ L ++ +F+ HE D ++ K
Sbjct: 109 EKQQQLSIPHLVDNEICDEASVMSDIPDAELVKLDAFNA---HEKDQNIK--------KD 157
Query: 170 RLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAI 229
L I + + + S+L +H L F I++ +
Sbjct: 158 MSNNALLVSTSQVDNAHIVSHIFSQALRRAN-----RSSLQKHILVSVVSFFTIIILFS- 211
Query: 230 GVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPV 289
G+ + G+ S L+ +++ N +K + K+T+RLLEDGSEVDVGP+
Sbjct: 212 GIFFVSGRIFISGNKNLQEKNIQTSNALQKA--TQTNRKLTQRLLEDGSEVDVGPAERTE 269
Query: 290 ADFANT-SNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKIL 348
+ A S + N + VL + + + +G +
Sbjct: 270 SPSAEGTSTVVATNLKSFGQVGEVVLYQMATKHDS----------------GKATTGSVS 313
Query: 349 WSLQQEKS-QGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ES 405
WSL E S +G++G L I+GDI + D S +TL+ N D +L ++++++F S
Sbjct: 314 WSLITEDSVKGIQGELAIRGDITIPDEGLSLRLTLRRNTDEALHAAYIIDLIFIISDKFS 373
Query: 406 QDAVVDLRRISMRKTDNS-PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFI 464
A+ +++ ++ +++ S L+ + I + ++ +L G+ RN +++ + +
Sbjct: 374 GQAINNIKSLTFKESGKSISQTLVGTVTAKIDNDFFVFALVGNHPFLDRNLQLIRDLDWF 433
Query: 465 DIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSNN 503
+ I+ ++G+ KG G IFK I +W + NN
Sbjct: 434 HLVISDKNGRMHELNFAKGPAGQAIFKEVIGKWLMKENN 472
>gi|319898404|ref|YP_004158497.1| hypothetical protein BARCL_0226 [Bartonella clarridgeiae 73]
gi|319402368|emb|CBI75907.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 474
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 112/513 (21%), Positives = 221/513 (43%), Gaps = 52/513 (10%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ +++ ++ + TP+ R +YE A ++ ++ +MK LPKE +E Q L+ A
Sbjct: 1 MVDFVGILKNTINAQKDATPKLRERVYERATETLEHKIVNMK--LPKEAIEAQRRALQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKEN------IFLEPRLRSISSILRSNKHKK 114
I VE++ +++ S I + T K N L S ++ + ++
Sbjct: 59 ITTVEEEY----LAVEKELLSSIMGWNYTEKRNDEKNAQNSLLSLENDGSVLVTEKQQQQ 114
Query: 115 LANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRG 174
L+ SV + N ++ +L I S ++ +E ++ ++S +
Sbjct: 115 LSVTNSVDNEIFDNASVISDMPDAKLVNIDSLNI---YEKGQNI--------EESMSKNA 163
Query: 175 KLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYS 234
LA I + + + S+L + L VF +++ + G +
Sbjct: 164 LLASNLQADNSHIVSHIFSQALRRAN-----RSSLQKRILIGVIVFFSLIILFS-GTFFV 217
Query: 235 IGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFAN 294
G+ S L+ +++ N +K + K+T+RLLEDGSEVDVGP+
Sbjct: 218 SGRIFISGDQNLQEKNIQISNTLQKA--AQTNRKLTQRLLEDGSEVDVGPA--------- 266
Query: 295 TSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSS-ILSGKILWSLQQ 353
K +E ++ V+ G +GE ++ + + + + G WSL +
Sbjct: 267 -----EKTVSSSEEGTSTVVATNLKLFGQ--VGEAVLYQMRTKHDAEKVTKGSASWSLIE 319
Query: 354 EKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVV 410
E S L ++GDI + S +TL+ N D SL ++++++F S +
Sbjct: 320 EDSVKGASGELALRGDITIPSEGLSLRLTLRRNTDESLCAAYIIDLIFITSDKFSGQTIN 379
Query: 411 DLRRISMRKTDNSPS-VLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPIT 469
+++ ++ + + S L + I + +L +L G+ RN +++ + ++ + ++
Sbjct: 380 NIKSLTFKANEKSIGQTLFGTVTAKIDNDFFLFALTGNHPFLDRNLQLIRDLDWLRLVMS 439
Query: 470 YRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
++G+ T KG G IF I QW + N
Sbjct: 440 DKNGRVHELTFAKGPAGEAIFNKVIGQWLMQKN 472
>gi|319406709|emb|CBI80342.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 480
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 113/519 (21%), Positives = 221/519 (42%), Gaps = 63/519 (12%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ +++ ++ + TP R IYEHA ++ + +MK LPKE +E Q + L+ A
Sbjct: 1 MVDFVGILKNKINAQKDITPRLRKQIYEHATKTLEHTIVNMK--LPKEAIEAQRSALQSA 58
Query: 61 ILQVEKQNQKSL-----------HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS 109
I VE++ + E + +SS++S EN +S+L +
Sbjct: 59 ITIVEEEYLAVEKEQLSLIIGWNCKDRNSGEKN-EQSSISSLENN---------ASVLAT 108
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
K ++L+ V + ++ + ++ +F+ HE D S+ K
Sbjct: 109 EKQQQLSITNLVDNEICDEASVISDMPDAEIVKLDAFNA---HEKDQSIK--------KD 157
Query: 170 RLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAI 229
L I + + + +L +H L F I++ +
Sbjct: 158 MPNNTLLVSTSQVDNAHIVSHIFSQALRRAN-----RPSLQKHILVSVVSFFSIVILFS- 211
Query: 230 GVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPV 289
+ + + S L+ +++ N+ +K + K+T+RLLEDGSEVDVGP+
Sbjct: 212 SIFFISERIFISGNKSLQEKNIQASNILQKA--TQTNRKLTQRLLEDGSEVDVGPAERTE 269
Query: 290 ADFANT-SNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKIL 348
+ S + N + VL + + + +G +
Sbjct: 270 SPSTEGISTVVATNLKSFGQVGEAVLHQMATKHDS----------------GKATTGSVS 313
Query: 349 WSLQQEKS-QGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ES 405
WSL E S +G++G L I+GDI + D S +TL+ N D +L ++++++F S
Sbjct: 314 WSLITEDSVKGIQGELAIRGDITIPDEGLSLRLTLRRNTDEALHAAYIIDLIFIISDKFS 373
Query: 406 QDAVVDLRRISMRKTDNSPS-VLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFI 464
A+ +++ + +++ S L+ + I + ++++L G+ RN +++ + +
Sbjct: 374 GQAINNIKSLIFKESGKSIGQTLVGTVTAKIDNDFFVVALIGNHPFLDRNLQLMRDLDWF 433
Query: 465 DIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSNN 503
+ I+ ++G+ KG G IFK I +W + N+
Sbjct: 434 HLVISDKNGRMHELNFAKGPAGQAIFKEVIEKWLMKENS 472
>gi|319408109|emb|CBI81762.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 481
Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats.
Identities = 122/515 (23%), Positives = 231/515 (44%), Gaps = 55/515 (10%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFI ++++ +D TP+ R IY+ A + + ++ ++PK++ + Q L+ A
Sbjct: 1 MVDFIGILKKKIDAQNNITPQLRERIYKQAFEILEHKF--LEIKMPKKVADAQRQALQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I+ +E++ T++++ S + +T K+N E +SI S + A +++
Sbjct: 59 IVAIEEEY----LTAEKELLSSVMGWDLTGKDNNN-ENVQKSILS-----QSGDTAAVVT 108
Query: 121 VQGK-----SRTNTNLSPKNFSCRLREILSFSVNTQ-HEYDSSVSPVAAIEHD---KSRL 171
+ K SR + +P N S I S NT+ + ++S++P ++ H K+
Sbjct: 109 EEKKQQPPVSRRKSKKTPDNLS-----IESKMSNTEPTDMNTSLAPCSSKVHSNIKKNTR 163
Query: 172 RRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGV 231
+ L S IF + S + + L +F++ L+ + IG
Sbjct: 164 KNVALQTDTSHVVSHIFA----QALRRAN-----RSIVKKRILIGIVIFIVFLI-LLIGA 213
Query: 232 SYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVAD 291
+ S + ++ ++ N +K K+T+RLLEDGSEVD G +I D
Sbjct: 214 FFVGEYMFTSYNNQIQEVNIQASNGLQKE--GQANQKLTQRLLEDGSEVDAG--SIERTD 269
Query: 292 FANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSS-ILSGKILWS 350
++ +E ST V G + E GE + S ++ G + WS
Sbjct: 270 KK-------TEFLSEEETSTVVTGNSKTIEH---PGEAIFYKTHADHDSEKVVMGNVWWS 319
Query: 351 LQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF-SFPKESQD 407
L +E S + L I+GDI + +TL+ N D S ++M+++F + K S
Sbjct: 320 LIKEASVKNAPEELAIRGDINIPSEGLLLQLTLRRNVDPSFPTAYIMDLVFMTTDKFSGQ 379
Query: 408 AVVDLRRISMRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDI 466
A+ D++ ++ + + S ++ ++I I + +L +L + +N +I+ E +I +
Sbjct: 380 AIHDIKELTFKASKQSVGQPLERASIAKIDDDFFLFALSNNHPFLDQNLQIIRELDWIHL 439
Query: 467 PITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
I+ ++G T KG G IF I QW ++
Sbjct: 440 VISDKNGHMSELTFAKGPTGKAIFNEVIEQWLAQT 474
>gi|319405170|emb|CBI78775.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 474
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 113/512 (22%), Positives = 212/512 (41%), Gaps = 50/512 (9%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M+DF+ +++ ++ E TP+ R +YE A + ++ ++K L K +E Q L+ A
Sbjct: 1 MIDFVGILKNTINAQKEITPKLREQVYERATKILEHKIVNIK--LSKAAIEEQRRALQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSIS-----SILRSNKHKKL 115
I VE++ ++++ S I + T K + + S ++L K +L
Sbjct: 59 ITTVEEEY----LAVEKEQLSSIMGWNCTEKTSDEKNAQSSLASLENDVAVLAIEKQHQL 114
Query: 116 ANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGK 175
+ V + ++ L + +F N HE S++ +K +
Sbjct: 115 SITSLVDNEIVDEVSVISDMPDAELVNVDAF--NNAHEEGSNI--------EKDMSKNVP 164
Query: 176 LAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSI 235
L I + + + S L + L F I++ +
Sbjct: 165 LVSPSQVDNSHIVSHIFSQALRRAN-----RSTLQKRILVSIISFFSIIILFSSIFF-IS 218
Query: 236 GKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANT 295
G+ S L+ ++ N +K + K+T+RLLEDGSEVDVGP+ +
Sbjct: 219 GRIFISDNQNLQEKNTQISNTAQKA--TQTNRKLTQRLLEDGSEVDVGPAEKSEFPSSEG 276
Query: 296 -SNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQE 354
S + N + VL + + +G WSL E
Sbjct: 277 TSTVIATNLKSFGQAGEAVLYQMPTKHDT----------------GKAATGSASWSLITE 320
Query: 355 KS-QGLKG-LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVVD 411
S +GL+G L I+GDI + D S +TL+ N D SL ++++++F S A+ D
Sbjct: 321 DSVKGLQGELAIRGDIIIPDEGLSLRLTLRRNTDESLHAAYIIDLIFITSDKFSGQAIND 380
Query: 412 LRRISMRKTDNSPS-VLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITY 470
++ ++ ++++ S L+ + I + ++ +L GS RN +++ + ++ + I+
Sbjct: 381 IKSLTFKESETSIGQTLVGTVTAKIDNDFFVFALIGSHPFLDRNLQLIRDLDWLRLVISD 440
Query: 471 RSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
++G+ T KG G IF I QW + N
Sbjct: 441 KNGRMYELTFTKGPAGQTIFNEIIGQWLMKKN 472
>gi|121602864|ref|YP_988609.1| hypothetical protein BARBAKC583_0286 [Bartonella bacilliformis
KC583]
gi|120615041|gb|ABM45642.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 499
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 105/513 (20%), Positives = 215/513 (41%), Gaps = 53/513 (10%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++ +D TP+ R +YE A ++ +L +P+ +++ Q L+ A
Sbjct: 1 MVDFVGILKKTIDAQNNVTPQVRKQVYERAIETLEHKLVEAN--MPETVIDAQRQALQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSN-------KHK 113
I VE++ +++ S + T N F + + ++ L+S K +
Sbjct: 59 ISVVEEEY----LAVEKELLSSVIGWKFT---NEFDDHKRTPSTAFLKSKVMSVFVTKQQ 111
Query: 114 KLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRR 173
S++ + ++ L + SF ++H+ + ++ +K + +
Sbjct: 112 HSFVTESIKNEILNKSSKILSIPDAELVNMDSF-FASEHKINQNI--------EKKKSKN 162
Query: 174 GKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSY 233
++ I + + +++ + + VF+ I +
Sbjct: 163 DAISS-AQVDNFHIISHIFAQALQRAN-----RASVRKRIVIGVCVFVSFCFVF-ISAFF 215
Query: 234 SIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFA 293
+ S H L+ + N+ V PK+T+RLLEDGSE++VGP A
Sbjct: 216 VGKRVFVSSDHQLQEDDTYVPNLSSTVV--QANPKLTQRLLEDGSEINVGPVEEEEAQGE 273
Query: 294 NTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQ 353
++ N I G + + R + + + +G LWSL +
Sbjct: 274 KGTSTVVANDI-----------NSMKHAGEVVFYQSRTDYDAEK----VATGSALWSLVK 318
Query: 354 EKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVV 410
E S + L I+GDI + D S +TL+ N D+SL ++M+++F S A+
Sbjct: 319 ETSVNGQSEELAIRGDIKIPDEGLSLRLTLRRNTDLSLPAAYIMDLIFITSDKFSGQAIS 378
Query: 411 DLRRISMRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPIT 469
D++ ++ + ++ S + + + I + +L++L G RN +++ E +I + +
Sbjct: 379 DIKTLTFKASEQSVGQALTRTVVAKIDDDFFLVALSGHYPFLNRNLQLIRELDWIRLVMN 438
Query: 470 YRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
++G+ T KG+ G IF I QW ++N
Sbjct: 439 DKNGRVNELTFAKGETGEAIFNQVIGQWLAQTN 471
>gi|163867807|ref|YP_001609011.1| hypothetical protein Btr_0568 [Bartonella tribocorum CIP 105476]
gi|161017458|emb|CAK01016.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 473
Score = 372 bits (954), Expect = e-101, Method: Composition-based stats.
Identities = 102/508 (20%), Positives = 200/508 (39%), Gaps = 52/508 (10%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFI ++++A++ TP+ R IY+ A ++ + + ++P+ I + Q L+ A
Sbjct: 1 MVDFIGILKKAINAQNNVTPQVRQRIYKRATETLEHQF--LTAKIPQAIADEQRRILQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I VE++ + PK K I ++ + S K K+ +S
Sbjct: 59 ITTVEEEYLEVEKRLLSSAMGWNPKDINEDKRYIKEVILPKNNEFSVVSTKSKQDFVKIS 118
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ +S + A + R
Sbjct: 119 KDNEVLNEPCVS-DMPEAEPVN------------------MQAYLPSEHVNRCALKVSPS 159
Query: 181 SFPTGSIFWSVHNYFFNKTR-GLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
I + + + L+ +S + + V + +G+ + G+
Sbjct: 160 QEDNPHIVSHIFSQALRRANKSLVQRRIVISAISVVSFVV-------LTVGIFFIGGRVF 212
Query: 240 GSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVG-PSTIPVADFANTSNI 298
S H L E+L K + ++ K+T+RLLEDGSEVDVG D S +
Sbjct: 213 VSNDHQLLGETLQASQGVPKAL--SVKRKLTQRLLEDGSEVDVGLKQAADSYDEEGISKV 270
Query: 299 AFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKS-- 356
KN +++ G + + R + + + +G W+L +E
Sbjct: 271 VAKNLQSLEKS------------GEAVFYQARTNYDAEK----VATGSARWTLIRESHVK 314
Query: 357 QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVVDLRRI 415
+ + I+GDI + D S + L+ NAD S ++M+++F S A+ +++ +
Sbjct: 315 GASEEMAIQGDITIPDEGLSLRLILRRNADRSFPAAYIMDLIFILSDKFSGKAISNVQAL 374
Query: 416 SMRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
+ + ++ S + + I+ + +L++L G+ RN +++ E +I + +T ++G+
Sbjct: 375 TFKASEQSIGQALTRTISAKINDDFFLVALSGNHPFLDRNLQLMRELNWIRLVLTDKNGR 434
Query: 475 KILFTIDKGKKGADIFKSAIMQWENRSN 502
T KG G IF I QW + +
Sbjct: 435 INELTFAKGPTGESIFNEVIGQWLAQQD 462
>gi|49475180|ref|YP_033221.1| hypothetical protein BH03800 [Bartonella henselae str. Houston-1]
gi|49237985|emb|CAF27190.1| hypothetical protein BH03800 [Bartonella henselae str. Houston-1]
Length = 451
Score = 372 bits (954), Expect = e-100, Method: Composition-based stats.
Identities = 100/503 (19%), Positives = 203/503 (40%), Gaps = 70/503 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++A++ TP+ R IY+ A ++ + + +P+ I E Q L+ A
Sbjct: 1 MVDFVGILKKAINAQNNVTPQLRKRIYKRALKTLEHQFVATT--IPQAIAEEQRKILQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I VE + +++ S + + I ++KH + + +
Sbjct: 59 IATVEAEY----LAVEKELLSSVIGWNPKG---------------ITEADKHTQTS--VL 97
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
QG + +S + + +QH ++++ R LA
Sbjct: 98 SQGHESSILGMS----DAEPVNMKA-CFASQHADNTTL-------------RVSPLASPL 139
Query: 181 SFPTGSIFWSVHNYFFNK-TRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
I + + + R + +S + +F +I G+ + G+
Sbjct: 140 QGDNPHIVSHIFSQALRRANRSSMQRRIVISTAIVTGFFTLII-------GICFVGGRVF 192
Query: 240 GSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIA 299
S H L ++ +V + + ++ K+T+RLLEDGSEVD S AD +N I+
Sbjct: 193 ISNDHQLSGGNVKASHVLPQTL--SVKRKLTQRLLEDGSEVDT--SLDQTADSSNEEGIS 248
Query: 300 FKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKS--Q 357
I S LG+ + + R + + + +G W+L +E
Sbjct: 249 --TAISSSLQSMEQLGEA-------VFYQARTDYDTEK----VATGSARWTLIKESRVKG 295
Query: 358 GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVVDLRRIS 416
+ I+GDI + D S + L+ N D+S ++M+++F S A+ ++ ++
Sbjct: 296 APEESAIQGDITIPDKGLSLRLILRRNTDVSFPAAYIMDLIFILSDKFSGQAISSVQALT 355
Query: 417 MRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQK 475
+ ++ S + + I + +L++L RN +++ E ++ + +T ++G+
Sbjct: 356 FKASEQSVGQALTRTVTAKICDDFFLVALSSKHPFLNRNLQLMRELDWMRLVLTDKNGRT 415
Query: 476 ILFTIDKGKKGADIFKSAIMQWE 498
T KG G IF I +W
Sbjct: 416 NELTFAKGPIGESIFNKVIGKWL 438
>gi|49473930|ref|YP_031972.1| hypothetical protein BQ02810 [Bartonella quintana str. Toulouse]
gi|49239433|emb|CAF25782.1| hypothetical protein BQ02810 [Bartonella quintana str. Toulouse]
Length = 475
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 94/510 (18%), Positives = 205/510 (40%), Gaps = 54/510 (10%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++A+D TP+ R +Y+ A ++ + + +PK I + Q L+ A
Sbjct: 1 MVDFVGILKKAIDAQINVTPQVRERVYKRAIETLEHQFAAAT--IPKAIADEQKKILQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSS---VTSKENIFLEPRLRSISSILRSNKHKKLAN 117
I VE++ +++ S + + + + L + + +
Sbjct: 59 IAAVEEEY----LAVEKELLSSVIGWNPKGIAEDDKHIQNSILPQENEFSVVKMESRQGS 114
Query: 118 ILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLA 177
I S + + L + ++ + + + D + + LA
Sbjct: 115 ITSSKDNQAFGESSESGIPDAELVNMEAY--------------LTSQDADNNTFKTSPLA 160
Query: 178 GIFSFPTGSIFWSVHNYFFNK-TRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIG 236
I + + + R + +S + + + +I G+ +
Sbjct: 161 LSLQGDNPHIVSHIFSQALRRANRSSMQRRIVISAAVVTSFVMLII-------GIYFIGV 213
Query: 237 KSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPS-TIPVADFANT 295
+ H L ++ ++ K ++ K+T+RLLEDGSEVDVG + T ++
Sbjct: 214 RVFVLNDHQLSGGNVQASHLLPKA--PAVKRKLTKRLLEDGSEVDVGLNPTADSSNEEGI 271
Query: 296 SNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEK 355
S + N ++ G + + R + + + +G W+L +E
Sbjct: 272 STVVTSNLQSIEQP------------GEAVFYQARTNYDAEK----VATGNARWTLIKES 315
Query: 356 S--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDAVVDL 412
S G + I+GDI + D S + L+ N D+S ++M+++F S A+ ++
Sbjct: 316 SVKGGPEESAIQGDITIPDKGLSLRLILRRNTDLSFPAAYIMDLIFILSDKFSGQAIRNV 375
Query: 413 RRISMRKTDNSPSVLI-DSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYR 471
+ ++ + ++ S + + I + +L++L G+ RN +++ E ++ + +T +
Sbjct: 376 QAVTFKASEQSVGQALKRAVAAKIDDDFFLVALSGNHPFLNRNLQLMRELDWMRLVLTDK 435
Query: 472 SGQKILFTIDKGKKGADIFKSAIMQWENRS 501
+G+ T KG G IF I QW ++
Sbjct: 436 NGRINELTFAKGPTGKSIFNEVIGQWLAQT 465
>gi|240850015|ref|YP_002971408.1| putative transmembrane protein [Bartonella grahamii as4aup]
gi|240267138|gb|ACS50726.1| putative transmembrane protein [Bartonella grahamii as4aup]
Length = 473
Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats.
Identities = 101/515 (19%), Positives = 205/515 (39%), Gaps = 66/515 (12%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDF+ ++++A+D T + R IY+ A ++ + + K +P+ I + Q L+ A
Sbjct: 1 MVDFVGILKKAIDAQNNVTSQVRKRIYKRAIETLEYQFVTAK--IPQAIADEQRKILQSA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSN-------KHK 113
I VE++ ++ S + T NI + + + + ++N K K
Sbjct: 59 IATVEEEY----LAVEKKLLSSVIGWDPT---NINEDKKYTKKTILPKNNEFSVLDIKRK 111
Query: 114 KLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRR 173
+ K +S + + V +QH + ++ E
Sbjct: 112 QDFVTHPKDSKLFDEPWVS-DIPDAEPVNMEA-DVPSQHVNSCELKISSSQE-------- 161
Query: 174 GKLAGIFSFPTGSIFWSVHNYFFNKTR-GLLSFYSALSEHHLFKYFVFLIILLGMAIGVS 232
I + + + L+ +S + + VF IG+
Sbjct: 162 ---------DNPHIVSHIFSQALRRANKSLVQRRIVISAVSVVSFAVF-------TIGIF 205
Query: 233 YSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVG-PSTIPVAD 291
+ G+ S H + E+L + K + ++ K+T+RLLEDGSE+DVG +D
Sbjct: 206 FIGGRVFVSNDHQVLGENLQVSHEVPKAL--SVKRKLTQRLLEDGSEIDVGLKQATDSSD 263
Query: 292 FANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSL 351
S + N D+ G + + R + + I +G + W+L
Sbjct: 264 EEGVSTVVSSNLQSLDKL------------GEAVFYQARTNYDAEK----IATGSVRWTL 307
Query: 352 QQEK--SQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK-ESQDA 408
+E + I+GDI + D S + L+ N D + ++M+++F S A
Sbjct: 308 IKESYVKGAPEETAIQGDITIPDEGLSLRLILRRNTDRTFPAAYIMDLIFILSDKFSGKA 367
Query: 409 VVDLRRISMRKTDNSPSVLID-SNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIP 467
+ ++ ++ + ++ S + + I+ + +L++L + RN +++ E ++ +
Sbjct: 368 ISSVQALTFKASEQSIGQPLVRTISTKINDDFFLVALSDNHPFLDRNLQLMRELDWVRLV 427
Query: 468 ITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
+T ++G+ T KG G IF I QW + +
Sbjct: 428 LTDKNGRINELTFAKGPTGESIFNKVIGQWLAQQD 462
>gi|319781042|ref|YP_004140518.1| hypothetical protein Mesci_1308 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166930|gb|ADV10468.1| hypothetical protein Mesci_1308 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 552
Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats.
Identities = 99/563 (17%), Positives = 193/563 (34%), Gaps = 75/563 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ +++ A+D + TPE+R+ IY R +A++L P E + Q LE A
Sbjct: 1 MADFVAILKNALDKHGDETPEKRTRIYASVRTMLAKKLGERSPPWAPEAIATQMRSLEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I VE+ KS+ + E + SS+ +N R + + + A ++
Sbjct: 61 ITSVERDYAKSVPETDPLAELEHIFSSIDRNKNQPSHTRQPAKA------ESAWPAPPVA 114
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + K R + + + + +P+ + +++ +
Sbjct: 115 KPEPYQPAPPPAAKVEPSWQRSTPAPAQPARAD-----TPLPGMNAEEADDEADVFSSN- 168
Query: 181 SFPTGSIFWSVHNYFF--NKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKS 238
+ R +A+ + + I L A G +G +
Sbjct: 169 -EDNEEPVQDTFQRLRPAERKRSYGGLIAAVVALLVVAGGGYGIWLNKDAFGKMLGLGGN 227
Query: 239 KGSITHFLRRESLDGGNVDKKNVFSGI-------RPKITRRLLEDGSEVDVGPSTIPVAD 291
+ + T ++ + K T+RL G EVD GP+
Sbjct: 228 QVAKTEPVKPAPAKPATDAAAAPPAPAAGGTEAESTKFTQRLTPQGGEVDPGPAGGQSGI 287
Query: 292 FANTSNIAFKNYIGGDENSTFVLGKKEIEEGNP--------------------------- 324
S A
Sbjct: 288 GEGESVAALTTPPSATNAPAISAPAAGTPAATTPPATDAAPATPPANGAAPAAPAGAAGT 347
Query: 325 ---------------------LIGEGRVFINK--GRGQSSILSGKILWSLQQEKSQG--L 359
+G+ +F + Q S G I+WSL QE G
Sbjct: 348 PPAPAGAAPPAPAAAPAEAALPVGQKAIFYEERTSTAQGSAEPGNIVWSLVQESPGGDLP 407
Query: 360 KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRRISMR 418
I+ + + MT++ N D +L +H++E++F P V ++ R++M+
Sbjct: 408 PEPAIRAEATIPGKDIQLRMTIRRNTDQTLPASHIIEMIFLTPDGFEGGGVDNILRVAMK 467
Query: 419 KTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILF 478
++ + I+ +L++L ++ D N +L +ID+P+ Y++G++ L
Sbjct: 468 ASEQDAGSPLIGIPAKIADGFFLVALNDTKADEDANMTLLRGQDWIDVPVVYKTGRRALL 527
Query: 479 TIDKGKKGADIFKSAIMQWENRS 501
T++KG G +F AI W+ ++
Sbjct: 528 TMEKGIPGEKVFDEAIKAWQAKT 550
>gi|148559726|ref|YP_001259535.1| hypothetical protein BOV_1625 [Brucella ovis ATCC 25840]
gi|148370983|gb|ABQ60962.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 465
Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + + S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREKASARCS--EYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|254700343|ref|ZP_05162171.1| hypothetical protein Bsuib55_05734 [Brucella suis bv. 5 str. 513]
gi|261750839|ref|ZP_05994548.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261740592|gb|EEY28518.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 465
Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 195/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G+ D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGSQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|23502539|ref|NP_698666.1| hypothetical protein BR1681 [Brucella suis 1330]
gi|161619612|ref|YP_001593499.1| hypothetical protein BCAN_A1719 [Brucella canis ATCC 23365]
gi|163845261|ref|YP_001622916.1| hypothetical protein BSUIS_B1156 [Brucella suis ATCC 23445]
gi|225628250|ref|ZP_03786284.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|254703462|ref|ZP_05165290.1| hypothetical protein Bsuib36_05962 [Brucella suis bv. 3 str. 686]
gi|254708451|ref|ZP_05170279.1| hypothetical protein BpinM_16230 [Brucella pinnipedialis
M163/99/10]
gi|254708696|ref|ZP_05170507.1| hypothetical protein BpinB_00256 [Brucella pinnipedialis B2/94]
gi|254714543|ref|ZP_05176354.1| hypothetical protein BcetM6_14632 [Brucella ceti M644/93/1]
gi|254717441|ref|ZP_05179252.1| hypothetical protein BcetM_13761 [Brucella ceti M13/05/1]
gi|256030222|ref|ZP_05443836.1| hypothetical protein BpinM2_06176 [Brucella pinnipedialis
M292/94/1]
gi|256160396|ref|ZP_05458086.1| hypothetical protein BcetM4_15424 [Brucella ceti M490/95/1]
gi|256255604|ref|ZP_05461140.1| hypothetical protein BcetB_15248 [Brucella ceti B1/94]
gi|256370091|ref|YP_003107602.1| hypothetical protein BMI_I1702 [Brucella microti CCM 4915]
gi|260167897|ref|ZP_05754708.1| hypothetical protein BruF5_05927 [Brucella sp. F5/99]
gi|260568770|ref|ZP_05839238.1| basic-leucine zipper transcription factor [Brucella suis bv. 4 str.
40]
gi|261219273|ref|ZP_05933554.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261222809|ref|ZP_05937090.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261315949|ref|ZP_05955146.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261316189|ref|ZP_05955386.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261322334|ref|ZP_05961531.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261754092|ref|ZP_05997801.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261757337|ref|ZP_06001046.1| basic-leucine zipper transcription factor [Brucella sp. F5/99]
gi|265987252|ref|ZP_06099809.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265998767|ref|ZP_06111324.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294850934|ref|ZP_06791610.1| hypothetical protein BAZG_03064 [Brucella sp. NVSL 07-0026]
gi|23348538|gb|AAN30581.1| conserved hypothetical protein [Brucella suis 1330]
gi|161336423|gb|ABX62728.1| Hypothetical protein BCAN_A1719 [Brucella canis ATCC 23365]
gi|163675984|gb|ABY40094.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|225616096|gb|EEH13144.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|256000254|gb|ACU48653.1| hypothetical protein BMI_I1702 [Brucella microti CCM 4915]
gi|260154154|gb|EEW89236.1| basic-leucine zipper transcription factor [Brucella suis bv. 4 str.
40]
gi|260921393|gb|EEX88046.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260924362|gb|EEX90930.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295024|gb|EEX98520.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261295412|gb|EEX98908.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261304975|gb|EEY08472.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261737321|gb|EEY25317.1| basic-leucine zipper transcription factor [Brucella sp. F5/99]
gi|261743845|gb|EEY31771.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262553456|gb|EEZ09225.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264659449|gb|EEZ29710.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294821577|gb|EFG38573.1| hypothetical protein BAZG_03064 [Brucella sp. NVSL 07-0026]
Length = 465
Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|256061719|ref|ZP_05451856.1| hypothetical protein Bneo5_15366 [Brucella neotomae 5K33]
gi|261325725|ref|ZP_05964922.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261301705|gb|EEY05202.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 465
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGAETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|306841399|ref|ZP_07474102.1| Basic-leucine zipper transcription factor [Brucella sp. BO2]
gi|306288584|gb|EFM59933.1| Basic-leucine zipper transcription factor [Brucella sp. BO2]
Length = 465
Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats.
Identities = 96/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N +E R S S K +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEVEQRAPSHSVDEEDEKSSFSTGPRA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRP-YKGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSADGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|225853139|ref|YP_002733372.1| hypothetical protein BMEA_A1735 [Brucella melitensis ATCC 23457]
gi|256114250|ref|ZP_05454995.1| hypothetical protein Bmelb3E_15653 [Brucella melitensis bv. 3 str.
Ether]
gi|256263370|ref|ZP_05465902.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
2 str. 63/9]
gi|265995556|ref|ZP_06108113.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|225641504|gb|ACO01418.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|262766840|gb|EEZ12458.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263093368|gb|EEZ17437.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
2 str. 63/9]
gi|326409695|gb|ADZ66760.1| conserved hypothetical protein [Brucella melitensis M28]
gi|326539402|gb|ADZ87617.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 465
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRP-YKGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESRE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|254694343|ref|ZP_05156171.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 3 str. Tulya]
gi|261214651|ref|ZP_05928932.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260916258|gb|EEX83119.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 465
Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats.
Identities = 98/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + S + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL------PEVERGDSDWKFERAREKASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGHASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESRE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|256045292|ref|ZP_05448186.1| hypothetical protein Bmelb1R_12432 [Brucella melitensis bv. 1 str.
Rev.1]
gi|260565815|ref|ZP_05836298.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
1 str. 16M]
gi|265991719|ref|ZP_06104276.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|260151188|gb|EEW86283.1| basic-leucine zipper transcription factor [Brucella melitensis bv.
1 str. 16M]
gi|263002675|gb|EEZ15078.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 465
Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEDADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESRE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|62290553|ref|YP_222346.1| hypothetical protein BruAb1_1666 [Brucella abortus bv. 1 str.
9-941]
gi|82700469|ref|YP_415043.1| basic-leucine zipper (bZIP) transcription factor [Brucella
melitensis biovar Abortus 2308]
gi|189024774|ref|YP_001935542.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
S19]
gi|237816059|ref|ZP_04595055.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254689851|ref|ZP_05153105.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 6 str. 870]
gi|254697999|ref|ZP_05159827.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 2 str. 86/8/59]
gi|254730885|ref|ZP_05189463.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 4 str. 292]
gi|256258104|ref|ZP_05463640.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 9 str. C68]
gi|260547200|ref|ZP_05822938.1| basic-leucine zipper transcription factor [Brucella abortus NCTC
8038]
gi|260755383|ref|ZP_05867731.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260758604|ref|ZP_05870952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762436|ref|ZP_05874773.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884399|ref|ZP_05896013.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|297248954|ref|ZP_06932662.1| basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 5 str. B3196]
gi|62196685|gb|AAX74985.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82616570|emb|CAJ11649.1| Basic-leucine zipper (bZIP) transcription factor [Brucella
melitensis biovar Abortus 2308]
gi|189020346|gb|ACD73068.1| Basic-leucine zipper (bZIP) transcription factor [Brucella abortus
S19]
gi|237788722|gb|EEP62934.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260095565|gb|EEW79443.1| basic-leucine zipper transcription factor [Brucella abortus NCTC
8038]
gi|260668922|gb|EEX55862.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260672862|gb|EEX59683.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260675491|gb|EEX62312.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260873927|gb|EEX80996.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|297174087|gb|EFH33444.1| basic-leucine zipper (bZIP) transcription factor [Brucella abortus
bv. 5 str. B3196]
Length = 465
Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 194/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K A +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVDEEDEKPSFSAGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + S + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL------PEVERGDSDWKFERAREKASARRSEYIERNAPREKRPY-KGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ +GSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASPAPAEERKFTQRLMPNGSEVDAGHASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSAQEQPVAVGQQALLYEERGGTETGSVQRGNVVWSVIEESRE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|254719686|ref|ZP_05181497.1| hypothetical protein Bru83_09113 [Brucella sp. 83/13]
gi|265984701|ref|ZP_06097436.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306837856|ref|ZP_07470718.1| hypothetical protein BROD_0663 [Brucella sp. NF 2653]
gi|264663293|gb|EEZ33554.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306407095|gb|EFM63312.1| hypothetical protein BROD_0663 [Brucella sp. NF 2653]
Length = 465
Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats.
Identities = 95/502 (18%), Positives = 192/502 (38%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + + E R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSSELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE + + P + N E R S S K +
Sbjct: 59 IAEVEASYAPPAPPRAEPQHD--PLDDFLHEANHEAEQRAPSHSVNEEDEKPSFSTGPHA 116
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + L + + + +S IE + R +R G+
Sbjct: 117 EADEEEADGAL----PEAERGDSDWKFERAREK--ASARRSEYIERNAPREKRP-YKGLI 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + +
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELAS-----------------SLGRSDAPATSTDGQ 212
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 213 PQDNASAAGGSSAGGQDQASQAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSTQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|306844674|ref|ZP_07477259.1| Basic-leucine zipper transcription factor [Brucella sp. BO1]
gi|306274846|gb|EFM56616.1| Basic-leucine zipper transcription factor [Brucella sp. BO1]
Length = 465
Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 97/502 (19%), Positives = 196/502 (39%), Gaps = 44/502 (8%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNLLEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I E + + + + P + N +E R S S+ ++ +
Sbjct: 59 IA--EVEASYAPPAPPRAEPQHDPLDDFLHEANHEVEQRAPS-HSVDEEDEKPSFSTGPR 115
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ P S + +S IE + R +R G+
Sbjct: 116 AEADEEEADGALP-----EAERGDSDWKFERAREKASARRSEYIERNAPREKRP-YKGLV 169
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
+ + Y + L ++ + + G+ K
Sbjct: 170 AGLIALLVIGGGGYAVWANKDKLQELASSLGR--------------SDAPATSTDGQPK- 214
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ G D+ + K T+RL+ DGSEVD G ++ TS A
Sbjct: 215 --DNASTAGGSSAGGQDQASQAPAEERKFTQRLMPDGSEVDAGRASGAPGIGEGTSTAA- 271
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG---QSSILSGKILWSLQQEKSQ 357
ST G + P+ + + + RG S+ G ++WS+ +E +
Sbjct: 272 ---------STAGPGNPPSTQEQPVAVGQQALLYEERGGTETGSVERGNVVWSVIEESPE 322
Query: 358 GLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRR 414
+ I+ ++ + ++ MT++ N D S+ +H++E++F+ P+ A+ +++R
Sbjct: 323 DGQPAQPAIRANVTIPNSKVELKMTIRKNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQR 382
Query: 415 ISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQ 474
I+ + T+ + + + I+ N ++I L + N ++ ++IDIPI YR+G+
Sbjct: 383 ITFKDTEQAAGNPLIAVPSKIADNFFIIWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGR 442
Query: 475 KILFTIDKGKKGADIFKSAIMQ 496
+ L +++KG G F +
Sbjct: 443 RALISLEKGVPGEKAFNDVLGA 464
>gi|153008563|ref|YP_001369778.1| hypothetical protein Oant_1232 [Ochrobactrum anthropi ATCC 49188]
gi|151560451|gb|ABS13949.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 479
Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 92/504 (18%), Positives = 191/504 (37%), Gaps = 36/504 (7%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + +PE R +Y AR ++ ++L + + + RQ N LE A
Sbjct: 1 MADFVAVLKKTIDAQADKSPELRQRVYAKARATIEQKLVTANA--SQAVAVRQRNILEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE T+ ++ D E+ E + + + A +
Sbjct: 59 IAEVEAFYAPPAATAPEEPVDDA-------LEDFLQEANQDAAERVPSHEDDDEPAFSSA 111
Query: 121 VQGKSRTN-TNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGI 179
+ + R N ++ + + ++ E + K R K G+
Sbjct: 112 PRDERRDNFSSEDDDAPAFAAERSDDWKLDRAKEKAQARRSEYIERTSKKEQRSYK--GL 169
Query: 180 FSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
+ + Y + + ++ A G
Sbjct: 170 IAALVAVLVLGGAGYAVWANKDKIQELASSLGR-------------SDAPATGSDTGTHP 216
Query: 240 GSITHFLRRESLDGGNVDKKNVFSGI---RPKITRRLLEDGSEVDVGPSTIPVADFANTS 296
T + ++ PK+T+RL+ DGSE D G + TS
Sbjct: 217 EDSTTPPADTNTATTGGEQTPEQPQQPAGEPKMTQRLMPDGSETDSGSAGAANGIGEGTS 276
Query: 297 NIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK--GRGQSSILSGKILWSLQQE 354
A + G + + +G+ + + G G S+ G ++WS +E
Sbjct: 277 TAAST---PAPAETNTQTGAQPGQNQTVAVGQQALLYEERGGAGSDSVERGNVVWSTIEE 333
Query: 355 KSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVV-D 411
+ + ++ + M + MT++ N D S+ +H++E++F+ P+ VV +
Sbjct: 334 SPEDGQPAEPAVRATVTMPTSKVELKMTIRKNTDQSIPASHLIELVFTVPEGFTGGVVDN 393
Query: 412 LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYR 471
++RI+ + T+ + + + I N +++ L + N ++ ++IDIPI+YR
Sbjct: 394 VQRITFKDTEQAAGNPLIAVPSKIGDNFFIVWLNDARTAQDTNLSLMRRLQWIDIPISYR 453
Query: 472 SGQKILFTIDKGKKGADIFKSAIM 495
+G++ L +++KG G F +
Sbjct: 454 NGRRALISLEKGVPGEKAFNDVLG 477
>gi|116253508|ref|YP_769346.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115258156|emb|CAK09257.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 851
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEI--- 319
+ K T+RLL DG+EVD GP+T+P A ++A +N D G
Sbjct: 589 AAANSKFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPASAQGDAAPADA 648
Query: 320 ----------EEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQ-GLKGLVIK 365
+ P+ ++F+ + R + + G ++WS+Q E Q G + ++
Sbjct: 649 RTPNGPVASPPQTAPVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQDGRQEATVQ 708
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
G++ + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 709 GNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDR 768
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L + N ++ +IDIPITYR+G++ L T++KG
Sbjct: 769 GDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRNGRRALLTMEKGG 828
Query: 485 KGADIFKSAIMQWENRSN 502
G D F +AI +W +
Sbjct: 829 TGTDAFNTAIKEWTALGD 846
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ +++ + +S
Sbjct: 61 IREVEGEHSEAMPLDESVVAVAAAES 86
>gi|190893169|ref|YP_001979711.1| hypothetical protein RHECIAT_CH0003587 [Rhizobium etli CIAT 652]
gi|190698448|gb|ACE92533.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 837
Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats.
Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY-------------IGGDEN 309
+ K T+RLL DG+EVD GP+ +P A ++A +N E
Sbjct: 575 AAANSKFTQRLLSDGTEVDSGPAAVPGTPTAEGKSVAEQNVAAADTPAASAQGDAARPET 634
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQGL-KGLVIK 365
T ++ P+ ++F+ + R + + G ++WS+Q E QG + ++
Sbjct: 635 LTPNGPAASPQQTAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQ 694
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
G+I + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 695 GNITVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDR 754
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L + N ++ +IDIPITYR+G++ L T+DKG
Sbjct: 755 GDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRNGRRALLTMDKGG 814
Query: 485 KGADIFKSAIMQWENRSN 502
G D F +AI +W +
Sbjct: 815 TGTDAFNTAIKEWTALGD 832
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ ++L + P+
Sbjct: 61 IREVEGEHSEALSLDEAAVAIAAPEP 86
>gi|86358941|ref|YP_470833.1| hypothetical protein RHE_CH03343 [Rhizobium etli CFN 42]
gi|86283043|gb|ABC92106.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 828
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY-------------IGGDEN 309
+ K T+RLL DG+EVD GP+T+P A ++A +N E
Sbjct: 566 AAANSKFTQRLLSDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPAASAQGDAAPPET 625
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQ-GLKGLVIK 365
T ++ P+ ++F+ + R + + G ++WS+Q E Q G + I+
Sbjct: 626 LTPNGPAASPQQAAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQNGRQEATIQ 685
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDA-VVDLRRISMRKTDNSP 424
G++ + + SA +T K N+D SL +H++EI+FS P + + ++RISM++T+
Sbjct: 686 GNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIESVQRISMKRTEQDR 745
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L + N +L +IDIPITYR+G++ L T++KG
Sbjct: 746 GDALIAVPAKITDDFHMIALNDYPDARKANLDLLSTRNWIDIPITYRNGRRALLTMEKGG 805
Query: 485 KGADIFKSAIMQWENRSN 502
G + F +AI +W +
Sbjct: 806 TGTNAFNTAIKEWTALGD 823
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 58/86 (67%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ ++L + P++
Sbjct: 61 IREVEAEHSEALPLDEATDAGAAPET 86
>gi|327190965|gb|EGE58019.1| hypothetical protein RHECNPAF_3500073 [Rhizobium etli CNPAF512]
Length = 837
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY-------------IGGDEN 309
+ K T+RLL DG+EVD GP+ +P A ++A +N E
Sbjct: 575 AAANSKFTQRLLSDGTEVDSGPAAVPGTPTAEGKSVAEQNVAAADAPAASAQGDAARPET 634
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQGL-KGLVIK 365
T ++ P+ ++F+ + R + + G ++WS+Q E QG + ++
Sbjct: 635 LTPNGPAASPQQTAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQ 694
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
G+I + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 695 GNITVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDR 754
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L + N ++ +IDIP+TYR+G++ L T+DKG
Sbjct: 755 GDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPVTYRNGRRALLTMDKGG 814
Query: 485 KGADIFKSAIMQWENRSN 502
G D F +AI +W +
Sbjct: 815 TGTDAFNTAIKEWTALGD 832
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ ++L + P+
Sbjct: 61 IREVEGEHSEALSLDEAAVAIAAPEP 86
>gi|241206035|ref|YP_002977131.1| hypothetical protein Rleg_3345 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859925|gb|ACS57592.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 841
Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIE-- 320
+ K T+RLL DG+EVD GP+T+P A ++A +N D G
Sbjct: 579 AAANSKFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPASAQGDAAPAAT 638
Query: 321 -----------EGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQGL-KGLVIK 365
+ P+ ++F+ + R + + G ++WS+Q E QG + ++
Sbjct: 639 PTPNGAAASPPQAAPVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQGGRQEATVQ 698
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
G++ + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 699 GNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDR 758
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L + N ++ +IDIPITYR+G++ L T++KG
Sbjct: 759 GDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRNGRRALLTMEKGG 818
Query: 485 KGADIFKSAIMQWENRSN 502
G D F +AI +W +
Sbjct: 819 TGTDAFNTAIKEWTALGD 836
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ +++ + +S
Sbjct: 61 IREVEGEHSEAMPLDEPVAAVTASES 86
>gi|209550664|ref|YP_002282581.1| hypothetical protein Rleg2_3088 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536420|gb|ACI56355.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 836
Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats.
Identities = 71/259 (27%), Positives = 132/259 (50%), Gaps = 19/259 (7%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY--------------IGGDE 308
+ K T+RLL DG+EVD GP+T+P A ++A +N + E
Sbjct: 573 AAANSKFTQRLLTDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPPAATAQGDVAPAE 632
Query: 309 NSTFVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQ-GLKGLVI 364
T ++ + ++F+ + R + + G ++WS+Q E Q G + +
Sbjct: 633 TPTPNGPAASPQQTALVGSSQKMFLYEERIGQSSPTAIEGSVVWSVQHEAGQDGRQEATV 692
Query: 365 KGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNS 423
+G++ + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 693 QGNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSLPPNFEGGSIDSVQRISMKRTEQD 752
Query: 424 PSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKG 483
+ + I+ + ++I+L + N ++ +IDIP+TYR+G++ L T++KG
Sbjct: 753 RGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRSWIDIPVTYRNGRRALLTMEKG 812
Query: 484 KKGADIFKSAIMQWENRSN 502
G D F +AI +W +
Sbjct: 813 NTGTDAFNTAIKEWTALGD 831
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 58/85 (68%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPK 85
I +VE ++ ++L + + P+
Sbjct: 61 IREVEGEHAEALPLDEPVAAAVAPE 85
>gi|298292947|ref|YP_003694886.1| hypothetical protein Snov_2991 [Starkeya novella DSM 506]
gi|296929458|gb|ADH90267.1| conserved hypothetical protein [Starkeya novella DSM 506]
Length = 490
Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats.
Identities = 90/515 (17%), Positives = 189/515 (36%), Gaps = 41/515 (7%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ LP+ + E R +YE AR ++ +L +++P LP++ +ER+ LE A
Sbjct: 1 MADYYPLLARAIGGLPDKSAEARKAVYERARRALTAQLRAVEPPLPEDDVEREQQALENA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I ++E + S P + ++ + + + +
Sbjct: 61 IRRIEADHGVS-----------APAAPTSAPNTSAPATPSPATPPVTPAPSAPAVPPPPR 109
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHD----KSRLRRGKL 176
+ + P + + +V E + HD +R+ R +
Sbjct: 110 PAAAESPSAPVRPAEPTGDFAPSEAEAVAAGIEPEGYAGKDEGERHDWRSEAARMVRARE 169
Query: 177 AGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIG 236
A S + + + LF +FL +L+ A+ V Y+
Sbjct: 170 AAALSDDDEAGQATADDGDSIAAEVPEETSGGSGRVRLFGALIFLALLIAGAV-VGYTQR 228
Query: 237 KSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTS 296
++ ++ + + PK T R+ + P + A +
Sbjct: 229 ETILALVGGAPASAPQTAQAPARPATPDA-PKSTDRIAQ-------APDSSRPAQSGQPA 280
Query: 297 NIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKS 356
A G + + E + GE + G + WS ++
Sbjct: 281 QPAQNAPSGTAAQGIDAPQRAVLFEESAGGGEQGLQQYV---------GTVKWSTERSPG 331
Query: 357 QGL--KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQ-DAVVDLR 413
+ I+ DI + SA++TL+ N D S+ +H++E+ F P V ++
Sbjct: 332 SAGTAPDVGIRADITIPARDISATLTLRRNQDTSIPASHIIEVQFKLPPNFDLGNVSNVP 391
Query: 414 RISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSG 473
+ + ++++ + ++ + +LI L + D RN L ++D+PI + +G
Sbjct: 392 GMRAKASESAQGAPLVGLAVRVAPSYFLIGLSALDSDIQRNLSFLITRNWLDLPIVFENG 451
Query: 474 QKILFTIDKGKKGADIFKSAIMQW-----ENRSNN 503
++ + ++KG+ G F+ A W + NN
Sbjct: 452 RRAILVLEKGEAGDQAFRQAFSAWGLAAPPAKENN 486
>gi|222149602|ref|YP_002550559.1| hypothetical protein Avi_3542 [Agrobacterium vitis S4]
gi|221736584|gb|ACM37547.1| conserved hypothetical Protein [Agrobacterium vitis S4]
Length = 715
Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 18/257 (7%)
Query: 262 FSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEE 321
K T++L+ DG+EVD G ++ A+ ++A +N GG + V G
Sbjct: 458 AGAAGQKFTQKLMPDGTEVDEG-ASNAAANSGEGRSVAQQN--GGANPAAPVSGGAASAP 514
Query: 322 GNPLIGEGRVFINKGRGQ-------------SSILSGKILWSLQQEKS-QGLKGLVIKGD 367
+G F GQ + + G I+W ++E G I+G
Sbjct: 515 ATTTPVQGAPFTVPENGQKAYLYEERLGQTTPTTVQGYIVWEARRETGDSGKPEPEIQGK 574
Query: 368 IPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSV 426
+ + + +A +T K N D SL +H+MEI+FS P+ + +D ++R++M+ ++
Sbjct: 575 LTIPERGLTALITFKRNTDSSLPASHLMEIVFSVPQNFEGGGIDSVQRVAMKTSEQDRGD 634
Query: 427 LIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKG 486
I + I+ ++++I+ E RN +L +IDIP+TYR+G++ L T+DKG G
Sbjct: 635 PIVAVPAKITDDTFMIAFNDFAEVVARNVDLLRSRDWIDIPVTYRNGRRALITLDKGVAG 694
Query: 487 ADIFKSAIMQWENRSNN 503
IF S I +W NN
Sbjct: 695 KPIFDSVIKEWAALGNN 711
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+RAVD L NTPE R +YE AR +V R+L++M P+ +++L RQ +KL+ A
Sbjct: 1 MADFVAVIRRAVDGLSNNTPEMRVKVYEKARGAVMRQLDNMTPKPSEDMLRRQLDKLDAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIP 84
I +VE ++L ++D P
Sbjct: 61 IAEVEADYAEALPAVEEDVYEPEP 84
>gi|15966480|ref|NP_386833.1| hypothetical protein SMc00644 [Sinorhizobium meliloti 1021]
gi|307300483|ref|ZP_07580263.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307318348|ref|ZP_07597783.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15075751|emb|CAC47306.1| Hypothetical protein SMc00644 [Sinorhizobium meliloti 1021]
gi|306896030|gb|EFN26781.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306904649|gb|EFN35233.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 753
Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats.
Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 23/269 (8%)
Query: 252 DGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTI-PVADFANTSNIAFKNYI------ 304
G + + K T+RLL DG+E+D GP+ A ++A + +
Sbjct: 474 QSGIEENAALSDAASTKFTQRLLADGTEMDEGPAVANETAASQEGKSVAARTHAVEPPNA 533
Query: 305 -------GGDENSTFVLGKKEIEEGNP---LIGEGRVFINKGR---GQSSILSGKILWSL 351
D+ ++ G+ E P + ++F+ + R + + G + WS+
Sbjct: 534 NAGVQQAAADQTASPGPGQAASEAAQPEVSVADGEKMFLYEERLGQSSPTAIPGTVAWSI 593
Query: 352 QQEKSQG--LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAV 409
++E G I+ I + D +A MT+K NAD SL +HV+E +FS P+ +
Sbjct: 594 KEESPGGDAKPEPAIQAQITVPDRGLTALMTIKRNADPSLPASHVIEFVFSLPESFEGGA 653
Query: 410 VD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPI 468
+D ++R+SM++T+ + + I+ + ++I+L E N+++L +IDIPI
Sbjct: 654 IDGVQRVSMKRTEQDRGDPLIAVPAKITDDFHMIALNDFAEAVSNNTELLRSRSWIDIPI 713
Query: 469 TYRSGQKILFTIDKGKKGADIFKSAIMQW 497
TYR+G++ L T++KG+ GAD F A+ W
Sbjct: 714 TYRNGRRALLTLEKGQGGADAFNKALQAW 742
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENT E R +YE AR +V R+LESM PR +++ RQ NKLEQA
Sbjct: 1 MADFVAVIRRTVDGLSENTLEMRGRVYEKARGAVRRQLESMNPRPSDDMINRQLNKLEQA 60
Query: 61 ILQVEKQNQKSLHTSKQ-DKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANIL 119
I +VE ++ ++L ++ + + S E + ++ ++ +
Sbjct: 61 ISEVESEHAEALPPVEETEAIEPDTLEAPPSDEAATPVTQEAEPEALPAASVEAEQTAPT 120
Query: 120 SVQGKSRTNTNLSPKNF 136
V+ + P++
Sbjct: 121 PVEEPASDAAPEEPEDL 137
>gi|150397813|ref|YP_001328280.1| hypothetical protein Smed_2615 [Sinorhizobium medicae WSM419]
gi|150029328|gb|ABR61445.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 766
Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats.
Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 23/258 (8%)
Query: 268 KITRRLLEDGSEVDVGPSTI-PVADFANTSNIAFKNYIGGDENS-------------TFV 313
K T+RLL +G+E D GP+ A ++A + + G EN+ +
Sbjct: 503 KFTQRLLANGTERDEGPAVANDTAASQEGKSVAARTHAGEPENTDAGLQQAAAGETASPA 562
Query: 314 LGKKEIEEGNP---LIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQG--LKGLVIK 365
G+ E P + ++F+ + R + + G + WS+++E G I+
Sbjct: 563 AGQAPSETAQPEVSVADGEKMFLYEERLGQSSPTAIPGAVAWSVKEESPGGDAKPEPAIQ 622
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
I + D +A +T+K NAD SL +HV+E +FS P+ + +D ++R+SM++T+
Sbjct: 623 AQITVPDRGLTALLTIKRNADPSLPASHVIEFVFSLPENFEGGAIDGVQRVSMKRTEQDR 682
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ + I+ + ++I+L E N+++L +IDIPITYR+G++ L T++KG+
Sbjct: 683 GDPLIAVPAKITDDFHMIALNDFAEAVSNNTELLRSRSWIDIPITYRNGRRALLTLEKGQ 742
Query: 485 KGADIFKSAIMQWENRSN 502
GA+ F A+ W +
Sbjct: 743 SGAEAFNKALQAWSALGS 760
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENTPE R +YE AR +V R+LESM PR +++ RQ NKLEQA
Sbjct: 1 MADFVAVIRRTVDGLSENTPEMRGRVYEKARGAVRRQLESMNPRPSDDMIGRQLNKLEQA 60
Query: 61 ILQVEKQNQKSLHT-SKQDKESDIPKSSVTSKENIFLEPRLRSISS 105
I +VE + ++L + + I + + E+ P+ S
Sbjct: 61 ISEVEGEYAEALPPIDEAETLEPISAEELPTDEDSTPLPQEPVPDS 106
>gi|110635486|ref|YP_675694.1| hypothetical protein Meso_3157 [Mesorhizobium sp. BNC1]
gi|110286470|gb|ABG64529.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 544
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 10/265 (3%)
Query: 247 RRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGG 306
+R+S K T+RLL DG EVD GP+ TS +A
Sbjct: 280 QRQSTAEAQATPDAPAESAPQKFTQRLLPDGREVDEGPAGGEAGLGEGTS-VAQAVQGSE 338
Query: 307 DENSTFVLGKKEIEEGNP----LIGEGRVFINKGRG--QSSILSGKILWSLQQEKSQG-- 358
G E E P IG+ +F + + +G ++WS+ +E
Sbjct: 339 APVQGRPGGSAEPAESQPDQSLPIGQKAIFYEERTSALEGYAENGSVVWSVVEESPGENL 398
Query: 359 LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRRISM 417
I+ + + + MT++ N D SL +H++E++F P+ + ++ RI+M
Sbjct: 399 PPEPAIQAEATIPEKGLQLRMTIRRNTDQSLPASHIVELIFLTPENFPGGGINNVLRINM 458
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKIL 477
++++ + I+ +L++L ++ED NS +L +IDIPI Y SG++ L
Sbjct: 459 KRSEQDTGSPLLGIPAKIADGFFLVALSDTQEDQRVNSTLLRRQSWIDIPIVYSSGRRAL 518
Query: 478 FTIDKGKKGADIFKSAIMQWENRSN 502
T++KG G IF A+ W ++
Sbjct: 519 ITMEKGLPGERIFNEALDAWSRDTS 543
Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF V+++AV+ L ENTPE R IY AR+++ +L ++ EI +RQ +E A
Sbjct: 1 MADFAAVLRKAVEALKENTPEAREKIYTKARSTIEAKLAAVSSPP--EIADRQRRLIEDA 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKE 92
I V+ + + + + D + ++ +
Sbjct: 59 IATVKAEY--ATPPAAKAGVDDELERLLSDLQ 88
>gi|158426295|ref|YP_001527587.1| hypothetical protein AZC_4671 [Azorhizobium caulinodans ORS 571]
gi|158333184|dbj|BAF90669.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 450
Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats.
Identities = 89/501 (17%), Positives = 180/501 (35%), Gaps = 64/501 (12%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ LP+NT E R +Y+ AR ++ ++L S+ P LP+ + R+ LE
Sbjct: 1 MADYYPLLVRAISGLPQNTAEARKVVYDRARAALLKQLRSVDPPLPEGEIGRERLSLE-- 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
+++ +++ D P+++ + R ++ ++ A+
Sbjct: 59 ---------EAIRRIEKEYVGDAPEAAPPAPPPSPAPRPPRPEAAPHAPLNPRRPASPDQ 109
Query: 121 VQGKSRTNTNLSP-KNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGI 179
R + + +V E P D+ R R G+
Sbjct: 110 PPEPVRAGASKPAFVRPAPGSVPEDETTVIRDAEPTGGAEPSGDAPADERRPRVGR---- 165
Query: 180 FSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK 239
N+ + + + + ++LLG G+ +I K
Sbjct: 166 -------------ATVRNRNGADAAPETGGKGKRIAIFAGISLVLLG---GIGVAIWKH- 208
Query: 240 GSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIA 299
S L E + +PK T R+ A +
Sbjct: 209 -SAIAALFGERPQQQAAPSAPPATPDQPKSTDRV-----------------TQAGGAARP 250
Query: 300 FKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGL 359
+ + + E +P + Q G + W +
Sbjct: 251 AQPAQAPRAPGQATTTRALLFEESPGNAQ----------QIQQFEGTVTWKTETVSGGPG 300
Query: 360 KGL--VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQ-DAVVDLRRIS 416
+ I+ +I + + + S TL+ N D +L +H +EI F+ P + V ++ +
Sbjct: 301 QPPDIGIRAEIQIPERKINVSFTLRRNLDQTLPASHTIEINFALPPDFPYGGVANVPVVR 360
Query: 417 MRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKI 476
+++T+++ + +S S+L+ L ++ D RN ++L+ +IDIPI Y + ++
Sbjct: 361 VKQTESAQGAPLAGLSVKVSSTSFLVGLSAAQVDKERNLQLLQTRPWIDIPIVYTNNKRA 420
Query: 477 LFTIDKGKKGADIFKSAIMQW 497
+ DKG G F+ A W
Sbjct: 421 IIAFDKGAAGTQAFQDAFSAW 441
>gi|222086842|ref|YP_002545376.1| hypothetical protein Arad_3514 [Agrobacterium radiobacter K84]
gi|221724290|gb|ACM27446.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 718
Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 40/277 (14%)
Query: 265 IRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENST------------- 311
+ K T+RLL +G+E D GP+ A ++A +N +
Sbjct: 435 VNTKFTQRLLANGTEEDEGPAAGGQPGVAEGKSVAEQNVASAAPATGAAAAPATAPAGNA 494
Query: 312 ----------------------FVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGK 346
++ P+ +VF+ + R + G
Sbjct: 495 DAAQATQSPAATAPAAPPPAAADQQASATPQQTAPVADGQKVFLYEERLGQTSPTAFEGT 554
Query: 347 ILWSLQQEKS-QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES 405
+ WSLQ+ K G ++G I + +A++T+ N D SL +H++E+ F P
Sbjct: 555 VTWSLQEGKGADGRPEPSVQGLINVPQRGLTATITVSRNTDSSLPASHLVELAFQVPPNF 614
Query: 406 QDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFI 464
+ + +++RI+++ T+ + + ++ + Y+++L + N +L+ +I
Sbjct: 615 EGGAIDNVQRIALKSTEQDRGDALIAVPAKVTDDVYMVALNDFPDARKTNLDLLKTRNWI 674
Query: 465 DIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
DIP+ YR+G++ L T++KG G+D F AI +W+
Sbjct: 675 DIPVVYRNGRRALLTMEKGPTGSDAFNKAIAEWQALG 711
Score = 37.1 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 49 ILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSS 87
+L RQ +KLE AI++VE ++ ++L ++ + +++P
Sbjct: 1 MLRRQLDKLETAIVEVEAEHAEALPAAE-EPVAEVPVVH 38
>gi|328542555|ref|YP_004302664.1| hypothetical protein SL003B_0935 [polymorphum gilvum SL003B-26A1]
gi|326412301|gb|ADZ69364.1| hypothetical protein SL003B_0935 [Polymorphum gilvum SL003B-26A1]
Length = 588
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 97/589 (16%), Positives = 201/589 (34%), Gaps = 97/589 (16%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++++ + +LPEN R +Y ARN++ +L++ +P L + + +LE+A
Sbjct: 1 MADYYSILKKTIASLPENNGAARRSVYSRARNAIVNQLKAYEPPLSPSEITAEQLRLEEA 60
Query: 61 ILQVEKQNQKSL----HTSKQDKESD-----IPKSSVTSKENIFLEPRLRSISSILRSNK 111
I +VE + + + ++ + +P S+ S S + +
Sbjct: 61 IRKVEAEAARETLGLGRPAAAEQAAPIPTVQVPSSATQSVSTAPAATPPPSPPAPSPAAP 120
Query: 112 HKKLANILSVQGKSRTNTNLSPKNFSCRLREI----LSFSVNTQHEYDS----------- 156
+ T + K + R + +FS + + S
Sbjct: 121 SPAAPARAPLGAPLGTAVRDAEKLGAASSRAVQSAKDAFSPDAEAGEASPPRREPTFGAS 180
Query: 157 ---------SVSPVAAIEHDKSRLRRGKL----------AGIFSFPTGSIFWSVHNYFFN 197
P++A+ + ++ +G F V
Sbjct: 181 TGPRAPVQPEPGPLSALTGPRDFSGDTRIRTADAGERKRSGDFGATAAPEEAPVAEEAKR 240
Query: 198 KTR-----GLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLRRESLD 252
R S L+ + L V ++I +G + + ++
Sbjct: 241 PRRPQPRASDRGKASTLTSYVLLAGLVLIVIGIGAVVYSQRDTLSDLFAGDSSPPEVAVA 300
Query: 253 GGNVDKKNVFSGIRP------KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGG 306
+ + + K T RLL+ D G P A T+ I GG
Sbjct: 301 PQAPEPAQAPAPVEENGARSEKSTDRLLD-----DNGQPAAPDARSVTTTLITPTQPAGG 355
Query: 307 DENSTFV---------------------------------LGKKEIEEGNPLIGEGRVFI 333
+ ++ + +
Sbjct: 356 TIVTPSGDVEATPAPTQPAPAPAPLEPPPAAEAPAVVPAPAAPTAEVAPETIVAQRSILY 415
Query: 334 NKG---RGQSSILSGKILWSLQQEK-SQGLKGLVIKGDIPMIDNAFSASMTLKCNADISL 389
+G G + G++ WS+ +E + G K V+ + + D S ++ +K N D SL
Sbjct: 416 EEGEDASGSGTASQGRVAWSVTEETDASGRKETVLAANAEIPDRNVSVTIRIKPNTDSSL 475
Query: 390 SITHVMEIMFSFPKESQD-AVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSE 448
+H++E+ F P+ V ++ + M+ T+ + + ++ + I+L E
Sbjct: 476 PASHLVEVQFQLPEGFSGRDVANVPGLVMKPTEEARGDALLGASVKVAPGYFWIALSSIE 535
Query: 449 EDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+ RN ++ E +IDIPI Y +G++ + T++KG G+ + A+ W
Sbjct: 536 SERERNIALMRERGWIDIPILYDTGKRAILTLEKGTPGSRALEQAMTVW 584
>gi|239832769|ref|ZP_04681098.1| Myristoylated alanine-rich C-kinase substrate [Ochrobactrum
intermedium LMG 3301]
gi|239825036|gb|EEQ96604.1| Myristoylated alanine-rich C-kinase substrate [Ochrobactrum
intermedium LMG 3301]
Length = 475
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 84/514 (16%), Positives = 182/514 (35%), Gaps = 58/514 (11%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +D + + P L + + + +EQ
Sbjct: 1 MADFVAVLKKTIDAQADKS-----------------------PELRQRVYAKARATIEQK 37
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSI-LRSNKHKKLANIL 119
++ ++ + +I + ++ E + P + + + AN
Sbjct: 38 LVTANASQAVAVR------QRNILEDAIAEVEAFYAPPATPPEPPVEDALDDFLQEANRA 91
Query: 120 SVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGI 179
+V + + E D + VA + +
Sbjct: 92 AVDRAPSHD-----DEPAFSAAPHDERRGRVSGEDDDEPAFVAER---NDDWKLDRAKEK 143
Query: 180 FSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVF----LIILLGMAIGVSYSI 235
+G + A+ Y V+ I L ++G S +
Sbjct: 144 AQARRSEYIERTSKKEKRSYKGPVVALIAVLALGTAGYVVWNNKDKIQELASSLGRSDAP 203
Query: 236 GKSKGSITH--------FLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTI 287
S T + G ++ K+T+RL+ DGSE D GP+
Sbjct: 204 ATGSDSQTQPQDTTPPADSNAATTGGEQTPEQPQQPAGEQKLTQRLMPDGSETDSGPAGG 263
Query: 288 PVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK--GRGQSSILSG 345
TS A + G + + +G+ + + G G S+ G
Sbjct: 264 ANGIGEGTSTAAST---PAPAETNSPAGAQPGQNQTVAVGQQALLYEERGGAGSDSVERG 320
Query: 346 KILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPK 403
++WS+ +E + + ++ + M + MT++ N D S+ +H++E++F+ P+
Sbjct: 321 NVVWSVIEESPEDGQPAQPAVRATVTMPTSKVELKMTIRKNTDQSIPASHLIEMVFTVPE 380
Query: 404 ESQDAVV-DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYR 462
VV +++R++ + T+ + + + I N +++ L + N ++ +
Sbjct: 381 GFSGGVVDNVQRVTFKDTEQAAGNPLIAVPSKIGDNFFIVWLNDARTAQDTNLSLMRRLQ 440
Query: 463 FIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQ 496
+IDIPI+YR+G++ L +++KG G F +
Sbjct: 441 WIDIPISYRNGRRALISLEKGVPGEKAFNDVLGA 474
>gi|114704941|ref|ZP_01437849.1| hypothetical protein FP2506_08391 [Fulvimarina pelagi HTCC2506]
gi|114539726|gb|EAU42846.1| hypothetical protein FP2506_08391 [Fulvimarina pelagi HTCC2506]
Length = 661
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 39/277 (14%)
Query: 264 GIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIG------------------ 305
G T+RLL DG+EVD GP+ F +++A
Sbjct: 385 GTTRDYTQRLLPDGTEVDEGPAERQPNQFGEGTDVAAATTAEDPVSEGTSPTLSSEIGRD 444
Query: 306 ----------------GDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQ--SSILSGKI 347
D +T V E GN + + VF + + +G +
Sbjct: 445 PEIVGGETAEGTPEADADGENTDVAAVDPGENGNVPVAQRTVFYQERTSDQPGTQETGNV 504
Query: 348 LWSLQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES 405
+WS+ +E I+ + + + +MT++ NAD +L +HV+E+MF P
Sbjct: 505 VWSVVEEPPIEGQPPEPAIRAVAEIPEEDVTMTMTIRRNADPTLPASHVIELMFDTPDSF 564
Query: 406 QDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFI 464
V ++R+++++T+ + + IS ++I+L ++ N +LE ++I
Sbjct: 565 AGGNVATVQRLALKRTEQARGEPLIGVAGKISDGFFIIALNNLDQAVENNLALLEGQQWI 624
Query: 465 DIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
DIPI Y SG++ L +I+KG G FK AI W++R+
Sbjct: 625 DIPIAYASGRRALVSIEKGVPGDRAFKEAIAAWDSRT 661
Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D V+++ +D LP +TP+ RS +Y+ AR ++ R+++ P L ++ + N LE+A
Sbjct: 1 MADLSGVLRKTIDGLPRSTPDMRSRVYDKARAAIQRQIQVANPPLGDDVAAARLNALEEA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLA-NIL 119
I + E+ + + ++ P ++ + S + A +
Sbjct: 61 IERTEQHYLNIENGGASLETANEPAAA--------QTFQREPESVPDEPPQETTPAEDTN 112
Query: 120 SVQGKSRT-NTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRG 174
+ G+S + + +++ + + + + ++ S A +EHD+
Sbjct: 113 AADGESDEHDLTATEEDYQAEVVQDRLEDASLEPSDATTSSQRAEMEHDEGERYDD 168
>gi|307944596|ref|ZP_07659936.1| putative CheA signal transduction histidine kinase [Roseibium sp.
TrichSKD4]
gi|307772345|gb|EFO31566.1| putative CheA signal transduction histidine kinase [Roseibium sp.
TrichSKD4]
Length = 588
Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats.
Identities = 103/587 (17%), Positives = 203/587 (34%), Gaps = 88/587 (14%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++++ + +LPE+ R +Y ARN++ +L++ +P L + + +LE+A
Sbjct: 1 MADYYSILKKTIASLPESNGSARRSVYSRARNAIVSQLKAYEPPLSPSEITAEQLRLEEA 60
Query: 61 ILQVEKQNQKSLH---------------------TSKQDKESDIPKSSVTSKENIFLEPR 99
I +VE + + ++ E + P +VT+ + +
Sbjct: 61 IRKVEAEAAREALGLGPSTTIAPEPSPQEAPAELELEKSSEPEAPAPAVTANDVPEVASE 120
Query: 100 LRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLRE--------ILSFSVNTQ 151
+ + + L + ++ + RE + + ++
Sbjct: 121 PTLSADLDSPLTGGPSHSPLKSEIEAAEQLGSASHEAVQSAREAYEEAPEPVEEKADTSK 180
Query: 152 HEYDSSVSPVAAIEHDKSRLRRGKLAGIF--------SFPTGSIFWSVHNYFFNKTRGLL 203
+ ++ VA+ E D + + +F S + + + R
Sbjct: 181 ERKEPTLGNVASREDDSTGNGDDDASSLFADEEPVAPSATSEVVSKAEARERRRAGREKR 240
Query: 204 SFYSALSE----HHLFKYFVFLIILLGMAIGVSYSI---GKSKGSITHFLRRESLDGGNV 256
S +ALS+ +L + GVSY + + S+ + D G
Sbjct: 241 SASAALSKNGGRSSNVMPIALAAVLAVVIAGVSYFVLVPQDNGASLQETAQETGTDTGTE 300
Query: 257 DKKNVFSGIR--------------PKITRRLLEDGSEVDVGPSTIPVADF---------- 292
+ + K T RLL+D E P V
Sbjct: 301 KIEAPTPAQQAAVEPEASETEEASNKNTDRLLDDNGEPAAAPDARSVTTTLITPGQTETV 360
Query: 293 --------------ANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG 338
A G D ST R + +
Sbjct: 361 LVEPQPSATPLPSLPEDGAPADGQASGTDVASTSPTETPPAPSTAATADAQRSILYEEGE 420
Query: 339 QSSILSGK----ILWSLQQEKS-QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
S ++WSL+ E G V+ D+ + + + ++ +K N D SL +H
Sbjct: 421 DGSGSGSASQGAVVWSLEDETDLSGKAQKVLVADVTIPERDVNVNLRIKPNDDTSLPASH 480
Query: 394 VMEIMFSFPKE-SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
++EI + FP+ S VV++ + M+ T+ + + +S + I+L +
Sbjct: 481 LVEIKYEFPENYSAGDVVNVPGLVMKPTEEARGDALLGASVKVSPGYFWIALSSLTSERD 540
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
RN +L E +IDIP+ Y +G++ + T++KG G+ AI W
Sbjct: 541 RNLGLLRERGWIDIPMLYDNGKRGILTLEKGGVGSQAVDQAISSWTA 587
>gi|15889717|ref|NP_355398.1| hypothetical protein Atu2446 [Agrobacterium tumefaciens str. C58]
gi|15157629|gb|AAK88183.1| conserved hypothetical Protein [Agrobacterium tumefaciens str. C58]
Length = 778
Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 17/247 (6%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVAD--FANTSNIAFKNYIGGDENST----------FVLG 315
K T+RL+ DG+E D GP+ A ++ +N + G
Sbjct: 522 KFTQRLMADGTERDEGPAAGANGQPVTAEGQSVYEQNVAPPPAGTAPANNAGAPAGTPAG 581
Query: 316 KKEIEEGNPLIGEGRVFINK---GRGQSSILSGKILWSLQQE-KSQGLKGLVIKGDIPMI 371
++ R+F+ + G+ + + G + WSLQQE ++G ++G I +
Sbjct: 582 TPAAQQPAAAATGDRMFLYEEVLGQTVPTAIQGSVSWSLQQENDAEGKPSPTVQGQITVP 641
Query: 372 DNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDS 430
SA +T K N D SL +H++EI+FS + +D ++RI+M+ T+ + +
Sbjct: 642 GRGLSALITFKRNTDPSLPASHLIEIVFSVSPGFEGGAIDSVQRIAMKSTEQDRGNALIA 701
Query: 431 NIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIF 490
I+ + ++I+L + N ++L+ +IDIP++YR+G++ L T+ KG G F
Sbjct: 702 VPAKITDDFHMIALNDFPDAMKTNLELLKSRNWIDIPVSYRNGRRALLTLQKGNDGIAAF 761
Query: 491 KSAIMQW 497
A+ +W
Sbjct: 762 DKALSEW 768
Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVD L NTPE R+ +Y+ AR++V R+LE+MKPR P+E+L RQ KL+ A
Sbjct: 3 MADFVAVIRKAVDGLANNTPENRAKVYDKARSAVVRQLENMKPRPPEELLRRQIAKLDAA 62
Query: 61 ILQVEKQNQKSLHTS-KQDKESDIPKSSVTSKE 92
I +V+ + ++L + D S + + + S E
Sbjct: 63 IAEVDSEYAEALPALTEDDAFSPVAEETAASYE 95
>gi|227823296|ref|YP_002827268.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
gi|227342297|gb|ACP26515.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
Length = 787
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 21/267 (7%)
Query: 252 DGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFA-NTSNIAFKNYIGGDENS 310
G + + K T+RLL DGSE D GP+ + A ++A + ++
Sbjct: 509 QPGTPEGTALPEDTSSKFTQRLLADGSERDEGPAGANGTEIAQEGKSVAPQTEAAQPQSD 568
Query: 311 TFVLGKK--------------EIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQ 353
+ + + ++F+ + R + + G WS+++
Sbjct: 569 AAGSQQAAAQTAQPPANQDGGAPQTEVSIADGEKMFLYEERLGQSSPTAVPGAAAWSIKE 628
Query: 354 EKSQG--LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDA-VV 410
E G I+ I + D +A MT+K N D SL +HV+E +FS P+ + +
Sbjct: 629 ESPGGDAKPEPAIQAQITVPDRGLTALMTIKRNVDPSLPASHVIEFVFSLPENFEGGAIE 688
Query: 411 DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITY 470
++R+SM++T+ + + I+ + ++I+L E N+++L +IDIPITY
Sbjct: 689 GVQRVSMKRTEQDRGDPLIAVPAKITDDFHMIALNDFAEAVGSNTELLRSRSWIDIPITY 748
Query: 471 RSGQKILFTIDKGKKGADIFKSAIMQW 497
R+G++ L T++KG G + F A+ W
Sbjct: 749 RNGRRALLTLEKGASGTEAFSKAMQAW 775
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI+R VD L ENTPE R +YE AR++V R+LE+M PR +++ RQ NKLE A
Sbjct: 6 MADFVAVIRRTVDGLSENTPEMRGRVYEKARSAVRRQLENMTPRPSDDMINRQLNKLELA 65
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +VE ++ ++L + E++ P+++ + LE + + + A +S
Sbjct: 66 ITEVESEHAEALPAIE---ETEAPETAQALGKTEVLETTEVLEPEAVEAPAEPESAAPVS 122
Query: 121 VQ 122
+
Sbjct: 123 PE 124
>gi|325293797|ref|YP_004279661.1| hypothetical protein AGROH133_08313 [Agrobacterium sp. H13-3]
gi|325061650|gb|ADY65341.1| hypothetical protein AGROH133_08313 [Agrobacterium sp. H13-3]
Length = 767
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 16/248 (6%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVAD--FANTSNIAFKNYIG---------GDENSTFVLGK 316
K T+RLL DG+E D GP+ A ++ +N +
Sbjct: 513 KFTQRLLADGTERDEGPAPGANGQPVTAEGQSVYEQNVAPPPAGEAPANTAAGTPAGTPP 572
Query: 317 KEIEEGNPLIGEGRVFINK---GRGQSSILSGKILWSLQQE-KSQGLKGLVIKGDIPMID 372
+ R+F+ + G+ + + G + WSLQQE ++G ++G I +
Sbjct: 573 AQPPAAAAAATGDRMFLYEEVLGQTVPTAIQGSVSWSLQQENDNEGRPSATVQGQITVPG 632
Query: 373 NAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSN 431
SA +T K N D SL +H++EI+FS + +D ++RI+M+ T+ + +
Sbjct: 633 RGLSALITFKRNTDPSLPASHLIEIVFSVSPGFEGGAIDSVQRIAMKSTEQDRGNALIAV 692
Query: 432 IFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFK 491
I+ + ++I+L + N ++L+ +IDIP++YR+G++ L T+ KG G F
Sbjct: 693 PAKITDDFHMIALNDFPDAMKTNLELLKSRNWIDIPVSYRNGRRALLTLQKGNDGIAAFD 752
Query: 492 SAIMQWEN 499
+A+ +W
Sbjct: 753 TALREWAA 760
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVD L NTPE R+ +Y+ AR++V R+LE+MKPR P+E+L RQ KL+ A
Sbjct: 1 MADFVAVIRKAVDGLANNTPENRAKVYDKARSAVVRQLENMKPRPPEELLRRQIAKLDAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKE 80
I +V+ + ++L ++D
Sbjct: 61 IAEVDSEYAEALPALEEDDA 80
>gi|254504629|ref|ZP_05116780.1| hypothetical protein SADFL11_4668 [Labrenzia alexandrii DFL-11]
gi|222440700|gb|EEE47379.1| hypothetical protein SADFL11_4668 [Labrenzia alexandrii DFL-11]
Length = 580
Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats.
Identities = 108/585 (18%), Positives = 206/585 (35%), Gaps = 92/585 (15%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++++ + +LPE+ R +Y ARN++ +L++ +P L + + +LE+A
Sbjct: 1 MADYYSILKKTIASLPESNGAARRSVYSRARNAIVNQLKAYEPPLSPSEITAEQLRLEEA 60
Query: 61 ILQVEKQNQK-------------------------------SLHTSKQDKESDIPKSSVT 89
I +VE + + + T+ + S P VT
Sbjct: 61 IRKVEAEAARESLGLQPSAPQAPATPAAPPVREPEPAPSVPAAATTSPVETSAPPAPPVT 120
Query: 90 SKE-NIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSV 148
S E + + S+ S S + + A+ LS S P + SV
Sbjct: 121 SPEPSAYPAEEPVSVPSSDASYESQPQASTLSGTAGSSLTEPEGPISSPETHPGYDPVSV 180
Query: 149 NTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFF-------NKTRG 201
D VS + D+ + AG+ P + K+R
Sbjct: 181 EPGPVSDDQVSQTEPLFEDEVVQPQTSTAGLTDAPVTPRASRSRSSASAALRSSEEKSRT 240
Query: 202 LLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSI----THFLRRESLDGGNVD 257
+ +A+ + + L +++ S T + V
Sbjct: 241 VPIAAAAVVAVLVLGAAAYF--FLSAPSEETFTDAAPAVSQEPEKTAVTEPAAPVEDTVS 298
Query: 258 KKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGG----------- 306
+ + K T RLL +E D P A T+ I ++ G
Sbjct: 299 ASSEDADDASKNTDRLL---NETDAN-VVAPDARAVTTTTINPQDTAPGTVAQPSIVTNV 354
Query: 307 --------DENSTFVLGKK-----------EIEEGNPLI-------GEGRVFINKGRGQS 340
D +T G E+ P G R + + +
Sbjct: 355 ESTPPADVDTPATDGAGVSQGVQPDSLAAVSPEQTEPAPAAQVPASGAQRSILYEEGADA 414
Query: 341 S----ILSGKILWSLQQEKSQGLKGL-VIKGDIPMIDNAFSASMTLKCNADISLSITHVM 395
S G ++W+L +E G + V+ + + + + +K N D SL +H++
Sbjct: 415 SSTGTAAQGAVIWTLGEETDLGGEAQSVLSAAVEIPERDIKVDIRIKPNDDTSLPASHLV 474
Query: 396 EIMFSFPKESQDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRN 454
EI + P+ +V++ + M+ T+ + + +S + I+L + RN
Sbjct: 475 EIKYELPEGFSGGDIVNVPGLVMKPTEEARGDALIGASVKVSPGFFWIALSSLPNEQQRN 534
Query: 455 SKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+L E +IDIP+ Y +G++ + T++KG G D + A+ W+
Sbjct: 535 LALLRERGWIDIPMLYENGKRGILTLEKGPIGEDAVEKAVSAWQA 579
>gi|90418988|ref|ZP_01226899.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337068|gb|EAS50773.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 661
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 47/284 (16%)
Query: 265 IRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNP 324
+ T+RLL DG+EVD GP+ + F +NIA + + + S EI E
Sbjct: 378 STRQFTQRLLPDGTEVDEGPAEVAPNAFDEGTNIAAASPVETPDLSGSPTVASEIGENPE 437
Query: 325 LIG------------------------------------------EGRVFINK--GRGQS 340
++G + VF +
Sbjct: 438 VVGAPAETPAETAAETPDAAPAEDAAAGETEVAAVDPSEDGVGVAQDAVFYQERTETVPG 497
Query: 341 SILSGKILWSLQQEKS--QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIM 398
+ SG ++WS+ E I+ + + D +MT++ NAD +L +HV+E++
Sbjct: 498 TQESGDVVWSVVNESPTEGQPPEPAIRAEAEIPDENLKMTMTIRRNADPTLPASHVIELL 557
Query: 399 FSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKI 457
F+ P+ +V +++R++++ ++ + + IS ++I+L E+ N +
Sbjct: 558 FTTPENFAGGSVANVQRLALKPSEQARGEPLIGVAGKISDGFFIIALNNLEQAMQNNMAL 617
Query: 458 LEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
L+ ++IDIPI Y SG++ L +I+KG G +FK AI W+ ++
Sbjct: 618 LQNEQWIDIPIAYASGRRALMSIEKGVPGDRVFKEAIEAWKAKT 661
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D V+++ +D LP TP+ R+ +YE AR ++ R++++ P L +E++ + + LE A
Sbjct: 1 MADLSGVLRKTIDGLPRATPQMRAKVYEKARAAIQRQIQAANPPLAEEVVAARQSALEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDK 79
I + E+ + D
Sbjct: 61 IARTEQHYLDQGAEADGDA 79
>gi|254559687|ref|YP_003066782.1| hypothetical protein METDI1148 [Methylobacterium extorquens DM4]
gi|254266965|emb|CAX22765.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 492
Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats.
Identities = 77/521 (14%), Positives = 185/521 (35%), Gaps = 51/521 (9%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQVEKQN-----QKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKL 115
I ++E + ++ + + + + + L + +
Sbjct: 61 IGRLEAEYEAPPAAVTMPAEEPAAAAPEAPLPLPPEPTRPEPLSPGPLPPTLPEPEPPQT 120
Query: 116 AN------ILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
++ SV ++T + + + + E P
Sbjct: 121 SDEPLVLPPASVPAGIGSDTGPAEPKPPAETVPFMPPTRRPKAEEAVKPEPENEGGFIPP 180
Query: 170 RLRRGKLAGIFSFP-TGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMA 228
++ + + N G + + + + +G
Sbjct: 181 VAEPEAVSVASEAEASANPASPETNGAGEAGNGRQRPRIDVVTPPEGRSRLLRNLFVG-- 238
Query: 229 IGVSYSIGKSKGSITHFLRRE--SLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPST 286
GV ++ FLR + L +++ K + R+ G+E +
Sbjct: 239 -GVLAAVIALIAVAAFFLRDQPSDLQQSAAEQETPAEQPDAKFSDRV---GAERNE---- 290
Query: 287 IPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK----GRGQSSI 342
+ + + + + + R Q
Sbjct: 291 -------------------AEARPKPAAPGAAPAQPEVTVSQRAILYEENQSDTRAQPIA 331
Query: 343 LSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
+G +W L+ + + ++ ++ + + SMT++ N D +L +H +E+ F+
Sbjct: 332 TNGHTVWRLEAVNGEQGEPLQTALRVNVEFPEAGLTLSMTMRKNLDATLPASHTVELAFT 391
Query: 401 FPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKIL 458
++ AV ++ + ++ + S + + +N +LI L + D RN+++L
Sbjct: 392 NNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLKSDVDRNTELL 451
Query: 459 EEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+ D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 452 LHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 492
>gi|163758774|ref|ZP_02165861.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
gi|162284064|gb|EDQ34348.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
Length = 531
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 70/246 (28%), Positives = 125/246 (50%), Gaps = 15/246 (6%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFA--NTSNIAFKNYIGGDE--------NSTFVLGKK 317
K T+RL DG+E D GP+ P D S + DE + +
Sbjct: 282 KFTQRLNADGTETDAGPAPGPATDAPVEGRSVAGLTDTTPADEAIAEESTAEAEVTTEEA 341
Query: 318 EIEEGNPLIGEGRVFINKGR-GQSS--ILSGKILWSLQQE-KSQGLKGLVIKGDIPMIDN 373
+ + +PL ++ + + R GQ S + G ++W+L E S+G VI+G+I D
Sbjct: 342 AVPQSDPLGVSQKMILYEERLGQQSLEVKPGTVVWTLVSEPSSEGPDSPVIRGEINNPDT 401
Query: 374 AFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSNI 432
SA +T+K N D SL +H++EI+F+ P+ +D L+RIS ++T+ + +
Sbjct: 402 GLSALLTIKKNNDPSLPASHLVEIVFAVPEGFSGGSIDQLQRISFKQTEADQGSPLIAVP 461
Query: 433 FVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKS 492
I+++ Y+++L E N+ ++ + +IDIP+ Y +G++ L T++KG G ++F
Sbjct: 462 AKITQDFYMVALNDLPEAAEANTGLMRQRSWIDIPVVYANGRQALITLEKGTTGTEVFNQ 521
Query: 493 AIMQWE 498
A+ W
Sbjct: 522 ALDAWA 527
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 56/85 (65%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ VI++AVDNL ENTPE R+ +Y+ AR ++ R+LE++ P E++ Q +KL A
Sbjct: 1 MADFVAVIRKAVDNLSENTPENRAKVYDKARAAIRRQLEAINPPPSDEVMASQLDKLGAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPK 85
I +VE ++ ++L + ++ + +
Sbjct: 61 IDEVESEHAEALPADLDETDALMAE 85
>gi|218528992|ref|YP_002419808.1| hypothetical protein Mchl_0963 [Methylobacterium chloromethanicum
CM4]
gi|218521295|gb|ACK81880.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 493
Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 81/530 (15%), Positives = 177/530 (33%), Gaps = 71/530 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I ++E + + E + R +S + +
Sbjct: 61 IGRLEAEYEAPPAAVTTPAEEPAAAAPEAPPPPPPEPTRPEPLSPGPLPPTLPEPEPPQT 120
Query: 121 VQ--------------------GKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSP 160
+ + P R + + P
Sbjct: 121 SDEPLVLPPASVPAGIGSDTGSAEPKPPAETVPFMPPTRRPKADEAVKPEPENEGGFIPP 180
Query: 161 VAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLL--SFYSALSEHHLFKYF 218
VA E A S T + + + + S L +
Sbjct: 181 VAEPEPVSVASESEAGADPASPETNGAGEAGNGRQRPRIDVVTPPEGRSRLLRNLFVG-- 238
Query: 219 VFLIILLGMAIGVSYSIGKSKGSITHFLRRE--SLDGGNVDKKNVFSGIRPKITRRLLED 276
GV ++ FLR + L +++ K + R+
Sbjct: 239 -----------GVLAAVIALIAVAAFFLRDQPSDLQQSAAEQETPAEQPDAKFSDRV--- 284
Query: 277 GSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK- 335
G+E + + + + + + +
Sbjct: 285 GAERNE-----------------------AEARPKPAAPGAAPTQPEVTVSQRAILYEEN 321
Query: 336 ---GRGQSSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLS 390
R Q +G +W L+ + + ++ ++ + + +MT++ N D +L
Sbjct: 322 QSDTRAQPIATNGHTVWRLEAVNGEQGEPLQTALRVNVEFPEAGLTLAMTMRKNLDATLP 381
Query: 391 ITHVMEIMFSFPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSE 448
+H +E+ F+ ++ AV ++ + ++ + S + + +N +LI L +
Sbjct: 382 ASHTVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLK 441
Query: 449 EDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
D RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW
Sbjct: 442 SDVDRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWR 491
>gi|260461444|ref|ZP_05809691.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032514|gb|EEW33778.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 205
Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
Query: 325 LIGEGRVFINK--GRGQSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMT 380
+G+ +F + Q S G I+WSL QE G I+ + + MT
Sbjct: 22 PVGQKAIFYEERTSTAQGSAEPGSIVWSLVQESPGGDLPPEPAIRAEATIPGKDIQLRMT 81
Query: 381 LKCNADISLSITHVMEIMFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNS 439
++ N D +L +H++E++F P V ++ R++M+ ++ + I+
Sbjct: 82 IRRNTDQTLPASHIIEMIFLTPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKIADGF 141
Query: 440 YLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+L++L ++ D N +L +ID+P+ Y++G++ L T++KG G +F AI W+
Sbjct: 142 FLVALNDTKADEDANMTLLRGQDWIDVPVVYKTGRRALLTMEKGIPGEKVFDEAIKAWQA 201
Query: 500 RS 501
++
Sbjct: 202 KT 203
>gi|218508086|ref|ZP_03505964.1| hypothetical protein RetlB5_11022 [Rhizobium etli Brasil 5]
Length = 182
Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 331 VFINKGR---GQSSILSGKILWSLQQEKSQGL-KGLVIKGDIPMIDNAFSASMTLKCNAD 386
+F+ + R + + G ++WS+Q E QG + ++G+I + + SA +T K N+D
Sbjct: 1 MFLYEERIGQSSPTAIEGSVVWSVQHEAGQGGRQEATVQGNITVPERNLSALVTFKRNSD 60
Query: 387 ISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLK 445
SL +H++EI+FS P + +D ++RISM++T+ + + I+ + ++I+L
Sbjct: 61 PSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDRGDALIAVPAKITDDFHMIALN 120
Query: 446 GSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
+ N ++ +IDIPITYR+G++ L T+DKG G D F +AI +W +
Sbjct: 121 DYPDARKANLDLMSTRNWIDIPITYRNGRRALLTMDKGGTGTDAFNTAIKEWTALGD 177
>gi|316935810|ref|YP_004110792.1| hypothetical protein Rpdx1_4509 [Rhodopseudomonas palustris DX-1]
gi|315603524|gb|ADU46059.1| hypothetical protein Rpdx1_4509 [Rhodopseudomonas palustris DX-1]
Length = 534
Score = 247 bits (629), Expect = 5e-63, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 9/214 (4%)
Query: 292 FANTSNIAFKNYIGGDENS--TFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKI 347
+T A E T +G+ E+ P+ + V ++ G +
Sbjct: 320 SPSTQTAAPATPAPSTERPKITDRVGQPSTEQAAPVA-QRVVLYDEDPNDPKGKQYVGSV 378
Query: 348 LWSLQQEKS---QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
+W +Q K +G + ++ DI + + F +M+ + N D SL +H E+ F P +
Sbjct: 379 VWKTEQVKGASAKGGGDIAVRADIEVPERQFKMTMSFRRNTDTSLPASHTAELTFILPAD 438
Query: 405 S-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
V ++ I M+ + S + ++ +L+ L E D RN ++L+E +
Sbjct: 439 FQGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVEADRSRNLQLLKERSW 498
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
D+PI Y +G++ + I+KG G F A W
Sbjct: 499 FDVPIVYGNGRRAIIAIEKGGPGERAFNDAFKAW 532
Score = 79.9 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQ 67
A+ +VE +
Sbjct: 61 AVRKVESE 68
>gi|218671440|ref|ZP_03521110.1| hypothetical protein RetlG_07163 [Rhizobium etli GR56]
Length = 400
Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 18/224 (8%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNY-------------IGGDEN 309
+ K T+RLL DGSEVD GP+ +P A ++A +N E
Sbjct: 177 AAANSKFTQRLLSDGSEVDSGPAAVPGTPTAEGKSVAEQNVAAADTPAASAQGDTARPET 236
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGR---GQSSILSGKILWSLQQEKSQGL-KGLVIK 365
T ++ P+ ++F+ + R + + G ++WS+Q E QG + ++
Sbjct: 237 LTPNGSAASPQQAAPVGSSEKMFLYEERIGQSSPTAIEGTVVWSVQHEAGQGGRQEATVQ 296
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVD-LRRISMRKTDNSP 424
G+I + + SA +T K N+D SL +H++EI+FS P + +D ++RISM++T+
Sbjct: 297 GNITVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGSIDSVQRISMKRTEQDR 356
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPI 468
+ + I+ + ++I+L + N ++ +IDIPI
Sbjct: 357 GDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPI 400
>gi|192293134|ref|YP_001993739.1| hypothetical protein Rpal_4773 [Rhodopseudomonas palustris TIE-1]
gi|192286883|gb|ACF03264.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 534
Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 9/214 (4%)
Query: 292 FANTSNIAFKNYIGGDENS--TFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKI 347
+T A E T +G+ E+ P+ + V ++ G +
Sbjct: 320 SPSTQTAAPATPAPSTERPKITDRVGQPSTEQAAPVA-QRVVLYDEDPNDPKGKQYVGTV 378
Query: 348 LWSLQQEKS---QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP-K 403
+W +Q K +G + ++ DI + + AF +M+ + N D SL +H E+ F P
Sbjct: 379 VWKTEQVKGASAKGGADIAVRADIEVPERAFKMTMSFRRNTDTSLPASHTAELTFILPAD 438
Query: 404 ESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
V ++ I M+ + S + ++ +L+ L E D RN ++L+E +
Sbjct: 439 FPGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKERSW 498
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
D+PI Y +G++ + I+KG G F A W
Sbjct: 499 FDVPIVYSNGRRAIIAIEKGGPGERAFNDAFKAW 532
Score = 81.0 bits (198), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKES 81
A+ +VE + + + + +
Sbjct: 61 AVRKVESEAAQRARDASRAELK 82
>gi|39937354|ref|NP_949630.1| hypothetical protein RPA4294 [Rhodopseudomonas palustris CGA009]
gi|39651212|emb|CAE29735.1| unknown protein [Rhodopseudomonas palustris CGA009]
Length = 533
Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 9/214 (4%)
Query: 292 FANTSNIAFKNYIGGDENS--TFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKI 347
+T A E T +G+ E+ P+ + V ++ G +
Sbjct: 319 SPSTQTAAPATPAPSTERPKITDRVGQPSTEQAAPVA-QRVVLYDEDPNDPKGKQYVGTV 377
Query: 348 LWSLQQEKS---QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP-K 403
+W +Q K +G + ++ DI + + AF +M+ + N D SL +H E+ F P
Sbjct: 378 VWKTEQVKGASAKGGADIAVRADIEVPERAFKMTMSFRRNTDTSLPASHTAELTFILPAD 437
Query: 404 ESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
V ++ I M+ + S + ++ +L+ L E D RN ++L+E +
Sbjct: 438 FPGGGVSNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKERSW 497
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
D+PI Y +G++ + I+KG G F A W
Sbjct: 498 FDVPIVYSNGRRAIIAIEKGGPGERAFNDAFKAW 531
Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ +L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISSLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKES 81
A+ +VE + + + + +
Sbjct: 61 AVRKVESEAAQRARDASRAELK 82
>gi|240137509|ref|YP_002961980.1| hypothetical protein MexAM1_META1p0777 [Methylobacterium extorquens
AM1]
gi|240007477|gb|ACS38703.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 493
Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats.
Identities = 81/532 (15%), Positives = 181/532 (34%), Gaps = 72/532 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 61 ILQV------EKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKK 114
I ++ ++ + + + L + +
Sbjct: 61 IGRLEAEYEAPPPAAATMPAEEPAATVPEAPPPPPPEPTRPEPLSPGPLPPTLPEPEPPQ 120
Query: 115 LAN------ILSVQGKSRTNTN---------LSPKNFSCRLREILSFSVNTQHEYDSSVS 159
++ SV T+T P R + + +
Sbjct: 121 TSDEPLVLPPASVPAAIGTDTGPAEPKPPAETVPFMPPTRRPKADEAVKPEPQNENGFIP 180
Query: 160 PVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLL--SFYSALSEHHLFKY 217
PV E A S T + + + + S L +
Sbjct: 181 PVTEPEPASVASEAEASADPASPETNGAGEAGNGRQRPRIDVVTPPEGRSRLLRNLFVG- 239
Query: 218 FVFLIILLGMAIGVSYSIGKSKGSITHFLRRE--SLDGGNVDKKNVFSGIRPKITRRLLE 275
GV ++ FLR + L +++ K + R+
Sbjct: 240 ------------GVLAAVIALIAVAAFFLRDQPSDLQQSAAEQETPAEQPDAKFSDRV-- 285
Query: 276 DGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK 335
G+E + + + + + + +
Sbjct: 286 -GAERNE-----------------------AEARPKPAAPGAAPAQPEVTVSQRAILYEE 321
Query: 336 ----GRGQSSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISL 389
R Q +G +W L+ + + ++ ++ + + +MT++ N D +L
Sbjct: 322 NQSDTRAQPIATNGHTVWRLEAVNGEQGEPLQTALRVNVEFPEAGLTLAMTMRKNLDATL 381
Query: 390 SITHVMEIMFSFPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGS 447
+H +E+ F+ ++ AV ++ + ++ + S + + +N +LI L
Sbjct: 382 PASHTVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSL 441
Query: 448 EEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+ D RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 442 KSDVDRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 493
>gi|86748456|ref|YP_484952.1| hypothetical protein RPB_1331 [Rhodopseudomonas palustris HaA2]
gi|86571484|gb|ABD06041.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 540
Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 6/219 (2%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS 344
+ + A T+ + T +G+ E + + V ++
Sbjct: 320 AMMSSAPSTETATPSAPPSSTERPKITDRVGQPSSSEAIAPVAQRVVLYDEDPSDPKGKQ 379
Query: 345 --GKILWSLQQEKS---QGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMF 399
G ++W +Q K +G L ++ DI + + F +M+ + N D SL +H E+ F
Sbjct: 380 YVGTVVWRTEQIKGASAKGGADLAVRADIEVPERKFKMTMSFRRNTDTSLPASHTAELTF 439
Query: 400 SFP-KESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKIL 458
P S V ++ I M+ + + + ++ +L+ L E D RN ++L
Sbjct: 440 ILPQDFSGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLL 499
Query: 459 EEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+E + D+PI Y + ++ + I+KG G F A W
Sbjct: 500 KERSWFDVPIVYTNQRRAIIAIEKGPPGERAFGEAFAAW 538
Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E+R IYE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDPSAPGEQRRAIYERARSALITQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESD 82
A+ +VE + + + + + +
Sbjct: 61 AVRKVESEAAQRSRDAARAELKN 83
>gi|13473316|ref|NP_104883.1| hypothetical protein mll3872 [Mesorhizobium loti MAFF303099]
gi|14024064|dbj|BAB50669.1| mll3872 [Mesorhizobium loti MAFF303099]
Length = 575
Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
Query: 325 LIGEGRVFINK--GRGQSSILSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMT 380
+G+ +F + Q S G I+WSL QE G I+ + + MT
Sbjct: 392 PVGQKAIFYEERTSTAQGSAEPGSIVWSLVQESPGGDLPPEPAIRAEATIPGKDIQLRMT 451
Query: 381 LKCNADISLSITHVMEIMFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNS 439
++ N D +L +H++E++F P V ++ R++M+ ++ + I+
Sbjct: 452 IRRNTDQTLPASHIIEMIFLTPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKIADGF 511
Query: 440 YLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+L++L ++ D N +L +ID+P+ Y++G++ L T++KG G +F AI W+
Sbjct: 512 FLVALNDTKADEDANMTLLRGQDWIDVPVVYKTGRRALLTMEKGIPGEKVFDEAIKAWQA 571
Query: 500 RS 501
++
Sbjct: 572 KT 573
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 99/312 (31%), Gaps = 10/312 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++A+D E TPE R+ Y+ AR+++ ++L P L +++ +Q LE A
Sbjct: 1 MADFVAVLKKALDKYGEPTPETRTRTYDGARSALVKKLAEFSPPLSADVVAKQKRSLEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I VE + KS+ + E + SS+ +N R + A
Sbjct: 61 IASVEHEYTKSVPEADPLAELEHIFSSIDRNKNQPSHTRQPVKAEPAWPAPPAAKAEPYR 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
S + S+ T V+P A
Sbjct: 121 PAPPPAATPEPYQSVPSPAAKAEPSWQKPTPV---QPVAPDLADPALPGMDTDQDDDRAD 177
Query: 181 SFPTGSIFWSVHNYFFN---KTRGLLSFYSALSEHHLFKYFVFLIIL----LGMAIGVSY 233
FP + + + R +A+ + + I L G +G+
Sbjct: 178 VFPNDEEPAAADTFRLRPAERRRSYGGLIAAVVALLVVAGGGYGIWLNKDAFGKMLGLDG 237
Query: 234 SIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFA 293
S +K + K T+RL +G E D GP+
Sbjct: 238 SKVVAKTEPVKPAPAKPATDAPATPAPAAGTEATKFTQRLTPEGGETDPGPAGGQTGVGE 297
Query: 294 NTSNIAFKNYIG 305
S A
Sbjct: 298 GESVAALTTPPS 309
>gi|75677145|ref|YP_319566.1| hypothetical protein Nwi_2964 [Nitrobacter winogradskyi Nb-255]
gi|74422015|gb|ABA06214.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 540
Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 292 FANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKILW 349
TS + G T +G+ + E + + V ++ G ++W
Sbjct: 328 SNQTSEMTKPVAPGLKPKITDRVGQPSMSETIAPVAQRVVLYDEDPSDPKGKQYVGSVVW 387
Query: 350 SLQQEKSQGL--KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-Q 406
++ K + ++ +I + + F +M+ + N D SL +H E+ F P +
Sbjct: 388 RTEEVKGAAGSKPEIAVRAEIDIPERKFKMTMSFRRNTDTSLPASHTAELTFVLPPDFDG 447
Query: 407 DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDI 466
V ++ + M+ + + + ++ +L+ L E D RN ++++E ++DI
Sbjct: 448 GGVSNVPGVLMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVESDRTRNLQLMKERSWLDI 507
Query: 467 PITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
P+ Y + ++ + I+KG G F A +W
Sbjct: 508 PLVYTNQRRAIIAIEKGAPGERAFNEAFTEW 538
Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDVNAPGEQRRALYERARTALIAQLRGVEPPLTESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLH 73
A+ +VE + +
Sbjct: 61 AVRKVESEAAQRAR 74
>gi|85715271|ref|ZP_01046254.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A]
gi|85697917|gb|EAQ35791.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A]
Length = 510
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 5/208 (2%)
Query: 295 TSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKILWSLQ 352
T+ +A G +G+ E + + V ++ G ++W +
Sbjct: 301 TAELAKPATPGLKPKIADRVGQPASSETIAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTE 360
Query: 353 QEKSQGL--KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAV 409
+ K + ++ +I + + F +M+ + N D SL +H E+ F P++ V
Sbjct: 361 EVKGAAGNKPEIAVRAEIDIPERKFKMTMSFRRNTDTSLPASHTAELTFVLPQDFDGGGV 420
Query: 410 VDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPIT 469
++ I M+ + S + ++ +L+ L E D RN ++L+E + D+P+
Sbjct: 421 SNVPGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVESDRVRNLQLLKERSWFDVPLV 480
Query: 470 YRSGQKILFTIDKGKKGADIFKSAIMQW 497
Y + ++ + I+KG G F A W
Sbjct: 481 YTNQRRAIIAIEKGAPGERAFNEAFTAW 508
Score = 83.4 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDVNAPGEQRRALYERARTALIAQLRGVEPPLSESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDK 79
A+ +VE + + + +
Sbjct: 61 AVRKVESEAAQRAREASRSG 80
>gi|27382162|ref|NP_773691.1| hypothetical protein bll7051 [Bradyrhizobium japonicum USDA 110]
gi|27355332|dbj|BAC52316.1| bll7051 [Bradyrhizobium japonicum USDA 110]
Length = 541
Score = 240 bits (611), Expect = 6e-61, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%)
Query: 282 VGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSS 341
G A + + V ++ + + V ++
Sbjct: 320 SGLFKSSPTQVVEAPKDASQ-PQSKPKIPDRVGQPSASDQPVAPVAQKVVLYDEDPSDPK 378
Query: 342 ILS--GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEI 397
G ++W L+ K+ G + + ++ DI + D F +M+ + N D SL +H E+
Sbjct: 379 GKQYVGSVVWRLEPIKASGNQKADVAVRADIEIPDRKFKMTMSFRRNTDSSLPASHTAEL 438
Query: 398 MFSFPKESQDA-VVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSK 456
F P++ V ++ I M+ + + + ++ +L+ L + D RN +
Sbjct: 439 TFILPQDFPGGSVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRARNVQ 498
Query: 457 ILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+L+E + D+P+ Y + ++ + I+KG G F A QW +
Sbjct: 499 LLKERSWFDVPLVYANQRRAIIAIEKGAPGERAFNDAFAQWGD 541
Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAALDPNAPGESRRALYERARTALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQVEKQNQKSLHTSKQ 77
A+ +VE + + + +
Sbjct: 61 AVRKVESEAAQRAREASR 78
>gi|148253375|ref|YP_001237960.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1]
gi|146405548|gb|ABQ34054.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1]
Length = 546
Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Query: 311 TFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKILWSLQQEKSQGLK--GLVIKG 366
T +G+ + + + V ++ G G ++W +Q K+ G + + ++
Sbjct: 353 TDRVGQAPSSDQIAPVAQRVVLYDEDPGDPKGKQYIGSVVWRTEQIKATGTQKADIAVRA 412
Query: 367 DIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP-KESQDAVVDLRRISMRKTDNSPS 425
DI + D F +M+ + N D SL +H E+ F P S V ++ I M+ + S
Sbjct: 413 DIEIPDRKFKMTMSFRRNTDTSLPASHTAELTFILPQDFSGGGVGNVPGILMKSNEQSRG 472
Query: 426 VLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKK 485
+ ++ +L+ L + D RN ++L+E + D+P+ Y + ++ + I+KG
Sbjct: 473 TPLAGLAVKVTDGFFLVGLSNVDADRTRNVQLLKERSWFDVPLVYTNQRRAIIAIEKGAP 532
Query: 486 GADIFKSAIMQWEN 499
G F A W +
Sbjct: 533 GERAFNDAFTLWGD 546
Score = 77.2 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGESRRALYERARAALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQV 64
A+ +V
Sbjct: 61 AVRKV 65
>gi|91978356|ref|YP_571015.1| hypothetical protein RPD_3893 [Rhodopseudomonas palustris BisB5]
gi|91684812|gb|ABE41114.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 541
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 311 TFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GKILWSLQQEKS---QGLKGLVIK 365
T +G+ E + + V ++ G ++W +Q K +G L ++
Sbjct: 347 TDRVGQPSSSEMVAPVAQRVVLYDEDPSDPKGKQYVGTVVWRTEQIKGASAKGGADLAVR 406
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVVDLRRISMRKTDNSP 424
DI + + F +M+ + N D SL +H E+ F P++ V ++ I M+ + +
Sbjct: 407 ADIEVPERKFKMTMSFRRNTDTSLPASHTAELTFILPQDFTGGGVANVPGILMKSNEQAR 466
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ ++ +L+ L E D RN ++L+E + D+PI Y + ++ + I+KG
Sbjct: 467 GTPLAGLAVKVTDGFFLVGLSNVEADRARNLQLLKERSWFDVPIVYTNQRRAIIAIEKGP 526
Query: 485 KGADIFKSAIMQW 497
G F A W
Sbjct: 527 PGERAFSEAFGAW 539
Score = 81.0 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E+R IYE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAISGLDPSAPGEQRRAIYERARAALIAQLRGVQPPLTESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESD 82
A+ +VE + + + + + +
Sbjct: 61 AVRKVESEAAQRSRDASRAELKN 83
>gi|92116702|ref|YP_576431.1| hypothetical protein Nham_1124 [Nitrobacter hamburgensis X14]
gi|91799596|gb|ABE61971.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 518
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 5/214 (2%)
Query: 289 VADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GK 346
+ TS I G T +G+ E + + V ++ G
Sbjct: 303 SSSPDQTSEIPKPATPGPRPKITDRVGQPPSSETVAPVAQRVVLYDEDPSDPKGKQYVGS 362
Query: 347 ILWSLQQEKSQGL--KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
++W ++ K + ++ DI + + F +M+ + N D SL +H E+ F P++
Sbjct: 363 VVWRTEEVKGVAGKTPEIAVRADIDIPERQFKMTMSFRRNTDTSLPASHTAELTFVLPQD 422
Query: 405 S-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRF 463
V ++ I M+ + + + ++ +L+ L E D RN ++L+E +
Sbjct: 423 FEGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVEADRSRNLQLLKERSW 482
Query: 464 IDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
D+P+ Y + ++ + I+KG G F A W
Sbjct: 483 FDVPLVYTNQRRAIIAIEKGAPGERAFNEAFTAW 516
Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E+R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDANAPGEQRRALYERARTALIAQLRSVEPPLSESEITRERLSLEE 60
Query: 60 AILQVEKQNQKSLHTSKQD 78
A+ +VE + + + +
Sbjct: 61 AVRKVESEAAQRARDASRG 79
>gi|146342760|ref|YP_001207808.1| hypothetical protein BRADO5934 [Bradyrhizobium sp. ORS278]
gi|146195566|emb|CAL79593.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 546
Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 5/223 (2%)
Query: 282 VGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSS 341
VG + + T +G+ + + + V ++
Sbjct: 324 VGAVSGLFKSNSTVEAPKDTAAPLSKPKITDRVGQSPSSDQIAPVAQKVVLYDEDPADPK 383
Query: 342 ILS--GKILWSLQQEKSQGLK--GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEI 397
G ++W +Q K+ G + + ++ DI + D F +M+ + N D SL +H E+
Sbjct: 384 GKQYLGSVVWRTEQIKATGTQKADIAVRADIEIPDRKFKMTMSFRRNTDTSLPASHTAEL 443
Query: 398 MFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSK 456
F P+ V ++ I M+ + + + ++ +L+ L + D RN +
Sbjct: 444 TFILPQNFDGGGVGNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRTRNVQ 503
Query: 457 ILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+L+E + D+P+ Y + ++ + I+KG G F A W +
Sbjct: 504 LLKERSWFDVPLVYSNQRRAIIAIEKGAPGERAFNDAFAVWGD 546
Score = 76.8 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR ++ +L S++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGESRRALYERARAALIAQLRSVQPPLSESEITRERLSLEE 60
Query: 60 AILQV 64
A+ +V
Sbjct: 61 AVRKV 65
>gi|90425560|ref|YP_533930.1| hypothetical protein RPC_4085 [Rhodopseudomonas palustris BisB18]
gi|90107574|gb|ABD89611.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 553
Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%)
Query: 283 GPSTIPVADFANTSNIAFKNYIGGDENSTFV-----LGKKEIEEGNPLIGEGRVFINKGR 337
GPS ++ A ++ +G+ + + + V ++
Sbjct: 327 GPSAWSSLRAMLSAEPAVVEAPKESAPTSRPKIADRVGQPSSMDQVAPVAQRVVLYDEDP 386
Query: 338 GQSSILS--GKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
G ++W +Q K G K + ++ D+ + + F +M+ + N D SL +H
Sbjct: 387 ADPKGKQYVGTVVWRTEQIKGSGGKPGDIAVRADVEIAERKFKMTMSFRRNTDASLPASH 446
Query: 394 VMEIMFSFP-KESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
E+ F P S V ++ I M+ + + + ++ +L+ L + D
Sbjct: 447 TAELTFVLPADFSGGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRA 506
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN ++L+E + DIP+ Y + ++ + I+KG G F A W
Sbjct: 507 RNLQLLKERSWFDIPLVYSNQRRAIIAIEKGSPGERAFSDAFTSW 551
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L + P E R +YE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPSAPGESRRALYERARSALIAQLRGVQPPLSESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESDI 83
A+ +VE + + + +
Sbjct: 61 AVRKVESEAAQRARDVTRSADQKA 84
>gi|163850433|ref|YP_001638476.1| hypothetical protein Mext_1000 [Methylobacterium extorquens PA1]
gi|163662038|gb|ABY29405.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
Length = 492
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 81/531 (15%), Positives = 180/531 (33%), Gaps = 71/531 (13%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEI----------- 49
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERKALDTA 60
Query: 50 ---LERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSI 106
LE ++ A+ ++ + + + + S +
Sbjct: 61 IGRLEAEYEAPPAAVTTPAEEPAAAAPEAPPPPPPEPTRPEPLSPGPLPPTLPEPEPPQT 120
Query: 107 LRSNKHKKLANILSVQG------KSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSP 160
A++ + G + + T P R + + + P
Sbjct: 121 SDEPLVLPPASVPAGIGSDTGPAEPKPPTETVPFMPPTRRPKADEAVKPEPENENGFIPP 180
Query: 161 VAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLL--SFYSALSEHHLFKYF 218
VA E A S T + + + + S L +
Sbjct: 181 VAEPEPVSVASEAEAGADPASPETNGAGEAGNGRQRPRIDVVTPPEGRSRLLRNLFVG-- 238
Query: 219 VFLIILLGMAIGVSYSIGKSKGSITHFLRRE--SLDGGNVDKKNVFSGIRPKITRRLLED 276
GV ++ FLR + L +++ K + R+
Sbjct: 239 -----------GVLAAVIALIAVAAFFLRDQPSDLQQSAAEQETPAEQPDAKFSDRV--- 284
Query: 277 GSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK- 335
G+E + + + + + + +
Sbjct: 285 GAERNE-----------------------AEARPKPAAPGAAPAQPEVTVSQRAILYEEN 321
Query: 336 ---GRGQSSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLS 390
R Q +G +W L+ + + ++ ++ + + +MT++ N D +L
Sbjct: 322 QSDTRAQPIATNGHTVWRLEAVNGEQGEPLQTALRVNVEFPEAGLTLAMTMRKNLDATLP 381
Query: 391 ITHVMEIMFSFPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSE 448
+H +E+ F+ ++ AV ++ + ++ + S + + +N +LI L +
Sbjct: 382 ASHTVELAFTNNADAGAQRAVQNIGLLQLKDEEASRGSPVSGLPVRVRENLFLIGLSSLK 441
Query: 449 EDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
D RN+++L + D+ +TY +GQ+ + + +KG GA +SA QW +
Sbjct: 442 SDVDRNTELLLHKNWFDLALTYANGQRAVISFEKGSAGAQALQSAFAQWRD 492
>gi|146337477|ref|YP_001202525.1| hypothetical protein BRADO0322 [Bradyrhizobium sp. ORS278]
gi|146190283|emb|CAL74279.1| hypothetical protein; putative exported protein [Bradyrhizobium sp.
ORS278]
Length = 484
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 4/226 (1%)
Query: 277 GSEVDVGPSTIPVADFANTSNI-AFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK 335
GSEV GP A S I N + +G +
Sbjct: 253 GSEVVFGPPRANPAPGTAESTIKTPANRQAAATAAMGPPPASTASDGRTPGLAVLYDEDP 312
Query: 336 GRGQSSILSGKILWSLQQEKSQ--GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITH 393
+ +G + W ++ KS G VI+ +I + D A++ L+ N D +L +H
Sbjct: 313 SDPKGKRYTGSVTWRMETIKSPQSGRAVPVIRAEIDVPDRKLKATLQLRRNDDPTLPASH 372
Query: 394 VMEIMFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPF 452
V E+ F+ + + ++ I M+ + + + +++ S+L+ L + D
Sbjct: 373 VAELTFARADDFAGGGINNVPGILMKSNEQARGTPLAGLAVKVTEGSFLVGLSNVDADRA 432
Query: 453 RNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
RN ++L + DIP+ Y + ++ + I KG G +F W+
Sbjct: 433 RNGELLAGREWFDIPLVYSNQRRGILAIGKGPSGDRVFADVFAAWD 478
>gi|260459390|ref|ZP_05807645.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium
opportunistum WSM2075]
gi|259034944|gb|EEW36200.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium
opportunistum WSM2075]
Length = 558
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 6/222 (2%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG--QSSI 342
P + + + +G+ +F + Q S
Sbjct: 276 QESPGPPVKDFPAPVPSPEVKLAPGISTFSRTDPPSISATSVGKA-IFYEERTATKQGSA 334
Query: 343 LSGKILWSLQQEKSQG--LKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
G ++WSL QE G + I+ + + F MT + N D +L +H++E++F
Sbjct: 335 DPGNVIWSLVQESPGGDLPREPAIRAEATIPGKNFRLRMTFRRNTDKTLPASHIVEMIFL 394
Query: 401 FPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
P V ++ R++M+ ++ + IS +L++L ++ D N +L
Sbjct: 395 TPDGFEGGGVDNILRVAMKSSEQDAGSPLIGIPAKISDGFFLVALNDAKADEDANLTLLR 454
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRS 501
++ DIPI Y+SG++ L T++KG + F+ A+ W S
Sbjct: 455 SQQWFDIPIVYKSGRRALMTLEKGSGAEETFQEALQAWAQLS 496
>gi|304393310|ref|ZP_07375238.1| putative CheA signal transduction histidine kinase [Ahrensia sp.
R2A130]
gi|303294317|gb|EFL88689.1| putative CheA signal transduction histidine kinase [Ahrensia sp.
R2A130]
Length = 613
Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 48/208 (23%), Positives = 95/208 (45%), Gaps = 3/208 (1%)
Query: 294 NTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKG--RGQSSILSGKILWSL 351
+ + +T P + + + +G +S+ G+++WS+
Sbjct: 402 SGPDPVLPPTAEEAAETTPEAPAATEPPATPAVSQSAILYEEGGSPADNSLDQGRVIWSV 461
Query: 352 QQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES-QDAVV 410
QE G + I+ + D MTLK NAD +L +H++E++F+ P + A+
Sbjct: 462 VQEDVNGKQEPAIRARAEVPDRNLVLIMTLKRNADEALPASHLIELIFAVPDDFSGGAIE 521
Query: 411 DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITY 470
++ R ++ ++ + I+ +LI+L E +N +L++ +IDIP+ Y
Sbjct: 522 EINRFVLKDSEQGRGEGLVGVPAKIADGIFLIALNNLEAAVAQNETLLQQRGWIDIPMQY 581
Query: 471 RSGQKILFTIDKGKKGADIFKSAIMQWE 498
R+G++ L T++KG G +FK W
Sbjct: 582 RTGRRALITLEKGIPGDKVFKDVFAAWA 609
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 2/177 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ V+QR + + P+ R +YE AR+++ R+L++ P + L+ + +KLE+A
Sbjct: 1 MADYHAVLQRTLSGFSDPKPQLREKLYERARSTIERQLKARTPAVDDATLKGELDKLEEA 60
Query: 61 ILQVEK--QNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANI 118
I +E + + + E + E L+P I++ +
Sbjct: 61 ITSIEGGYETNAAAEPAAPIVEEHAAGQVYAATEEPTLQPADAVIAAPFAEPEVDVPLAP 120
Query: 119 LSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGK 175
L + + + + + S L + + V + + + R
Sbjct: 121 LPAEAAEQAVFDAAQEADSALLAPLDQVPEEVAAAFHEQVDAIPEPADELPTVGRDA 177
>gi|17986635|ref|NP_539269.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
gi|17982250|gb|AAL51533.1| hypothetical transcription regulator [Brucella melitensis bv. 1
str. 16M]
Length = 177
Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Query: 327 GEGRVFINKGRGQ--SSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLK 382
G+ + + G S+ G ++WS+ +E + + I+ ++ + ++ MT++
Sbjct: 2 GQQALLYEERGGTETGSVERGNVVWSVIEESREDGQPAQPAIRANVTIPNSKVELKMTIR 61
Query: 383 CNADISLSITHVMEIMFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYL 441
N D S+ +H++E++F+ P+ A+ +++RI+ + T+ + + + I+ N ++
Sbjct: 62 KNTDQSIPASHLIEMVFTVPEGFPGGAIDNVQRITFKDTEQAAGNPLIAVPSKIADNFFI 121
Query: 442 ISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQ 496
I L + N ++ ++IDIPI YR+G++ L +++KG G F +
Sbjct: 122 IWLNDARTAQDTNLSLMRRLQWIDIPIAYRNGRRALISLEKGVPGEKAFNDVLGA 176
>gi|209886266|ref|YP_002290123.1| hypothetical protein OCAR_7154 [Oligotropha carboxidovorans OM5]
gi|209874462|gb|ACI94258.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
Length = 515
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 42/251 (16%)
Query: 250 SLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDEN 309
S +G++PKIT R+ + D G PVA A I +E+
Sbjct: 302 SAQQSAKQTGTNNTGVQPKITDRV----GQPDAGQQVAPVAQRA----------ILYEED 347
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK--GLVIKGD 367
+ GK+ + G ++W L Q + IK D
Sbjct: 348 PSDPQGKQTV-------------------------GTVVWRLDQVAPSPKQKPDTAIKAD 382
Query: 368 IPMIDNAFSASMTLKCNADISLSI-THVMEIMFSFPKESQDAVVDLRRISMRKTDNSPSV 426
+ + D ++T+ N D ++ +H MEI+F + + ++ + + D
Sbjct: 383 VELPDRKVKVALTIMRNTDPTMPATSHTMEIVFVVGPDFGTTIANVPGVYAKSPDQPRGT 442
Query: 427 LIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKG 486
+ + + +LI L + D RN ++L+E +DIPI Y +G++ + +I+KG G
Sbjct: 443 PLAATSVKVQDGYFLIGLSNVDVDRARNIQVLKERSSLDIPIVYGNGKRAILSIEKGSPG 502
Query: 487 ADIFKSAIMQW 497
F A W
Sbjct: 503 DRAFNEAFSAW 513
Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 1 MVDFILVIQRAVDNL-PENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RAV L P T E R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAVAGLDPNATGESRRALYERARTALIAQLRGVQPPLTEAEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESD-IPKSSVTSKENIFLEPRLRSISSILRSNKHKKL 115
A+ +VE + + E P+ +E LR + + +
Sbjct: 61 AVRKVEAEAAHRMRGDNHRPEGPRGPRPEGPGREGPRRGDILRDSARAAAGARAAQP 117
>gi|218680390|ref|ZP_03528287.1| hypothetical protein RetlC8_16460 [Rhizobium etli CIAT 894]
Length = 159
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 351 LQQEKSQGL-KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAV 409
+Q E QG + ++G++ + + SA +T K N+D SL +H++EI+FS P +
Sbjct: 1 MQHEAGQGGRQEATVQGNVTVPERNLSALVTFKRNSDPSLPASHLVEIVFSVPPNFEGGS 60
Query: 410 VD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPI 468
+D ++RISM++T+ + + I+ + ++I+L + N ++ +IDIP+
Sbjct: 61 IDSVQRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRSWIDIPV 120
Query: 469 TYRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
TYR+G++ L T++KG G + F +AI +W +
Sbjct: 121 TYRNGRRALLTMEKGDTGTEAFNTAIKEWAALGD 154
>gi|115526134|ref|YP_783045.1| hypothetical protein RPE_4140 [Rhodopseudomonas palustris BisA53]
gi|115520081|gb|ABJ08065.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 515
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 40/212 (18%), Positives = 85/212 (40%), Gaps = 3/212 (1%)
Query: 289 VADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS--GK 346
+ A T +G+ + + + V ++ G
Sbjct: 302 SSQPAAVDAPKDAATPQNRPKITDRVGQPSSMDQVAPVAQRVVLYDEDPNDPKGKQYVGT 361
Query: 347 ILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKES- 405
++W +Q K + ++ D+ + + +F +M+ + N D SL +H E+ F P +
Sbjct: 362 VVWRTEQIKGGKGSDIAVRADLEIPERSFKMTMSFRRNTDSSLPASHTAELTFMLPADFA 421
Query: 406 QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFID 465
V ++ I M+ + + + ++ +L+ L E D RN ++L+E + D
Sbjct: 422 GGGVSNVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVESDRARNIQLLKERSWFD 481
Query: 466 IPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+P+ Y + ++ + I+KG G F A W
Sbjct: 482 VPLVYTNQRRAIIAIEKGSPGDRAFADAFAAW 513
Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 1 MVDFILVIQRAVDNLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RA+ L N P E R +YE AR+++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAIAGLDPNAPGEARRALYERARSALIAQLRGVQPPLSESEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESD 82
A+ +VE + + + +DKE +
Sbjct: 61 AVRKVESEAAQRAREATRDKERN 83
>gi|299134306|ref|ZP_07027499.1| conserved hypothetical protein [Afipia sp. 1NLS2]
gi|298591053|gb|EFI51255.1| conserved hypothetical protein [Afipia sp. 1NLS2]
Length = 513
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 9/215 (4%)
Query: 292 FANTSNIAFKNYIGGDENS----TFVLGKKEIEEGNPLIGEGRVFINKGRG--QSSILSG 345
F ++ A +N G D T +G+ + + + + + + Q G
Sbjct: 297 FKSSPRTAIQNGAGSDTGVRPKITDRVGQSDSNQQVAQVAQRAILYEEDSSDPQGKQTVG 356
Query: 346 KILWSLQQE--KSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSI-THVMEIMFSFP 402
++W L Q + IK D+ + D ++T+ N D S+ +H MEI+F+
Sbjct: 357 TVVWRLDQVAASPKQKPDTAIKADVELPDRKMKVALTIMRNTDPSMPATSHTMEIVFTVG 416
Query: 403 KESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYR 462
+ + ++ + + D + + + +LI L + D RN ++L+E
Sbjct: 417 PDFGTTIANVPGVYAKSPDQPRGTPLAATSVKVQDGYFLIGLSNVDVDRARNIQVLKERS 476
Query: 463 FIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+DIPI Y +G++ + +I+KG G F A W
Sbjct: 477 SLDIPIVYGNGKRAILSIEKGSPGERTFNEAFSAW 511
Score = 86.8 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 1 MVDFILVIQRAVDNL-PENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQ 59
M D+ +I RAV L P + E R +YE AR ++ +L ++P L + + R+ LE+
Sbjct: 1 MADYYPLIARAVAGLDPNASGESRRALYERARTALIAQLRGVQPPLTEAEITRERLALEE 60
Query: 60 AILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANIL 119
A+ +VE + + E + +E LR + + + +
Sbjct: 61 AVRKVEAEAAHRMRGESHRSEPPRGRPEAPPREGPRRGDILRDSARAATGARAAQPGAPM 120
Query: 120 SVQGKSRTNT 129
+ SR +
Sbjct: 121 ARPTVSRNDA 130
>gi|148251921|ref|YP_001236506.1| hypothetical protein BBta_0307 [Bradyrhizobium sp. BTAi1]
gi|146404094|gb|ABQ32600.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 472
Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats.
Identities = 52/253 (20%), Positives = 97/253 (38%), Gaps = 18/253 (7%)
Query: 250 SLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDEN 309
+ N+ + SG + L DG G P A + +
Sbjct: 226 IFNQTNMAVQRATSGAQQPFVMFTLLDG-----GAQLSPAAAKPASPVASQAPAPPRPAA 280
Query: 310 STFVLGKKEIEEGNPLIGEGRVFINKGRGQS--SILSGKILWSLQQEKS--QGLKGLVIK 365
S + V ++ + SG ++W ++ KS G I+
Sbjct: 281 SAVAADARTPGLA--------VLYDEDVSEPRGKRYSGSVVWRIETVKSAQSGADTAAIR 332
Query: 366 GDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS-FPKESQDAVVDLRRISMRKTDNSP 424
+I + + S+ L+ N D +L +HV E+ F P+ A+ ++ + M+ ++ +
Sbjct: 333 AEIDIPERKLKVSLQLRRNDDPTLPASHVAELTFKPAPEFVGGAISNVPGMLMKTSEQAR 392
Query: 425 SVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGK 484
+ I++ S+L+ L E D RN ++L + DIP+ Y S ++ + I KG
Sbjct: 393 GTPLAGLAVKITEGSFLVGLSNVEADRARNEELLAGREWFDIPLVYASQRRGILAIGKGP 452
Query: 485 KGADIFKSAIMQW 497
G +F A W
Sbjct: 453 SGDRVFADAFAAW 465
>gi|154243994|ref|YP_001414952.1| hypothetical protein Xaut_0036 [Xanthobacter autotrophicus Py2]
gi|154158079|gb|ABS65295.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
Length = 460
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 3/166 (1%)
Query: 335 KGRGQSSILSGKILWSLQQEKSQGL--KGLVIKGDIPMIDNAFSASMTLKCNADISLSIT 392
G Q + G ++W + + + ++GD+ + + + S L+ N D +L +
Sbjct: 275 PGGAQPQVFEGTVVWKTETVNAGPGLPPDIGLRGDVVIPERKINMSFVLRRNTDQTLPAS 334
Query: 393 HVMEIMFSFPKESQ-DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
H +EI F P + V ++ + M+ + + ++ +L+ L D
Sbjct: 335 HTIEIGFKLPDDFPFGGVSNVDAVRMKPNQQALGTPLAGLAVRVNPTLFLVGLSEKPADR 394
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
RN +L+ Y ++D ITY + +K + +KG G F A W
Sbjct: 395 QRNVTLLQAYPWLDTLITYTNNKKAVLAFEKGPAGEQAFNDAFSAW 440
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+ +LP+ T E R +Y+ AR ++ R+L + P LP+ + R+ LE+A
Sbjct: 1 MADYYPLLVRAISSLPQKTGEGRRAVYDRARTALMRQLRGVDPPLPEGEITRERMSLEEA 60
Query: 61 ILQVEKQNQ---KSLHTSKQDKESD 82
I +VE S T + + E+
Sbjct: 61 IRRVEADYAQQDNSADTVEDEAEAA 85
>gi|220927319|ref|YP_002502621.1| hypothetical protein Mnod_7582 [Methylobacterium nodulans ORS 2060]
gi|219951926|gb|ACL62318.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 409
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 7/227 (3%)
Query: 278 SEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGR 337
S++ + P + + + G+ + R + +
Sbjct: 184 SKISENAAERPPESQDSKFADRVGGERAPAAPAAPAAPSRPSAAGSDIAIAQRATLYEES 243
Query: 338 GQSS----ILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSI 391
G + + G+++W L + + V++ + + + S ++ ++ N D +L
Sbjct: 244 GGPNNAPRAIQGQVVWRLDAINAGQGQPLQTVVRATLEVQEAGLSLALVIRRNTDTTLPA 303
Query: 392 THVMEIMFSFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDP 451
+HV+E+ F+ P +V D+ + + ++ + + +N +LI L + D
Sbjct: 304 SHVIELTFT-PGNPSRSVRDVGLLQFKDDESGRGSPVSGLPVPVRENIFLIGLSSLKSDV 362
Query: 452 FRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
RNS +L +ID+PI Y SG + + T +KG G + + A QW+
Sbjct: 363 ERNSDLLMRRNWIDLPIRYASGGRAILTFEKGSAGEQVMRDAFAQWQ 409
Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P+ R +YE AR ++ +L S+ P L +E ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPDMRKAVYERARAALTGQLRSLDPPLSEEDIDAERRSLDAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKES 81
I ++E + + + +
Sbjct: 61 IDRLEVEYGGAPRVREPEPAV 81
>gi|170744870|ref|YP_001773525.1| hypothetical protein M446_6846 [Methylobacterium sp. 4-46]
gi|168199144|gb|ACA21091.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 414
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 91/228 (39%), Gaps = 8/228 (3%)
Query: 278 SEVDVGPSTIPVADFAN--TSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK 335
S++ + P + + + + + I + +
Sbjct: 188 SKISENAAERPPEPQDSKFADRVGGERAPAAPPVAAAAPPPTRAGAPDITIAQRATLYEE 247
Query: 336 GRGQ---SSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLS 390
G +G+++W L + + V++ + + +M ++ N D +L
Sbjct: 248 AGGPNNGPRAAAGQVVWRLDAVNAGQGQPLQTVVRATAEAQEAGLTVAMVIRRNTDATLP 307
Query: 391 ITHVMEIMFSFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEED 450
+HV+E+ F+ P + V D+ + + +++ + + +N +LI L + D
Sbjct: 308 ASHVIELTFT-PTDPSRNVRDVGLLQFKDDESARGSPVSGLPVPVRENIFLIGLSNLKGD 366
Query: 451 PFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
RN+ ++ +ID+PI Y SG + + T +KG G + + A QW+
Sbjct: 367 IERNTDLMLRRNWIDLPIRYASGGRAILTFEKGSAGDRVMREAFEQWK 414
Score = 94.5 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P+ R +YE AR ++ +L S+ P L +E ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPDMREAVYERARAALTGQLRSLDPPLSEEDIDAERRSLDAA 60
Query: 61 ILQVEKQN 68
I ++E +
Sbjct: 61 IGRLEDEF 68
>gi|170752007|ref|YP_001758267.1| putative CheA signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
gi|170658529|gb|ACB27584.1| putative CheA signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
Length = 496
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 52/284 (18%), Positives = 106/284 (37%), Gaps = 22/284 (7%)
Query: 219 VFLIILLGMAIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGS 278
VF+ +L + IG+ L ++ G+ + K R+ G
Sbjct: 231 VFVGGVLAVVIGLIAVAAFLLRDRPQNLPSSGMEAGDTQQ----PEGETKFGDRV---GG 283
Query: 279 EVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRG 338
D P+ N++ + V + E+ E G
Sbjct: 284 --DAAPAPKAPTRVENSAPPRAAATPAPADAGVAVAQRAELVEEATGAQG---------G 332
Query: 339 QSSILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLKCNADISLSITHVME 396
Q ++ G++ W L+ + + + + + D + MT++ N D +L +H +
Sbjct: 333 QPTVTPGRVTWRLESVNGDQGQPVQNAVIATVTIPDAGLTLVMTIQRNLDATLPASHTVS 392
Query: 397 IMFSFPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRN 454
+ FS + V D+ + + ++ + + N +LI L + D RN
Sbjct: 393 LAFSQTGSNGASRTVQDVGLLQAKDEQSARGSPVSGLPVRVRDNLFLIGLSSLQNDVERN 452
Query: 455 SKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+ +L + DI + Y SG++ + T +KG GA + ++A W+
Sbjct: 453 TDLLLHRNWFDIALRYTSGRRAVLTFEKGAAGAQVMQNAFDAWQ 496
Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ TP R +Y+ ARN++ +L S+ P L + ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRTPALRKAVYDRARNALISQLRSLDPPLSEADIDLERRALDAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKE 80
I ++E + + +
Sbjct: 61 IERLEVDHGGLPAPANDAAQ 80
>gi|146338377|ref|YP_001203425.1| helicase [Bradyrhizobium sp. ORS278]
gi|146191183|emb|CAL75188.1| hypothetical protein; putative helicase [Bradyrhizobium sp. ORS278]
Length = 1644
Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 7/216 (3%)
Query: 284 PSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQ-SSI 342
P+ A+ A + D +T P+I ++ +
Sbjct: 1432 PAAALPAEPGPHKVAAERMTP--DVRTTAANATTTGSAAEPIISHAVLYQEDPQDPLGKR 1489
Query: 343 LSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFP 402
GK+ W + E++ G IKGD+ + D A+++L+ N + + +H+ME+ F++P
Sbjct: 1490 FLGKVTWRV--ERAAGSVPASIKGDVEI-DRQMKATLSLRPNKEADMPASHIMEVKFNWP 1546
Query: 403 KESQD-AVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEY 461
+ V L+ +SM+ + + + ++ ++I+L +E D RN +L+
Sbjct: 1547 DDPSHAGVDSLKGVSMKAKEAGRGSALSTLTAKVTPEFFMIALSANEVDKTRNVLLLKGK 1606
Query: 462 RFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
+IDIPI Y G + + I+KG G F A W
Sbjct: 1607 EWIDIPIVYNGGSRAVLAIEKGADGERAFADAFTAW 1642
>gi|146343109|ref|YP_001208157.1| hypothetical protein BRADO6306 [Bradyrhizobium sp. ORS278]
gi|146195915|emb|CAL79942.1| hypothetical protein BRADO6306 [Bradyrhizobium sp. ORS278]
Length = 1738
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 5/217 (2%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQ---SS 341
ST+P N G S + P+ + ++ Q
Sbjct: 1521 STLPSEPAPRKVNAERIMPDGKPVASAAADEHATVGMSVPVSTPAQAYLYHEDPQDPKGK 1580
Query: 342 ILSGKILWSLQQEKSQ-GLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
GK+ WSL+ K IKG+I + +N ++ L+ N ++ L +HVME+ F+
Sbjct: 1581 RFPGKVTWSLEPSKGPRADASAAIKGEIEI-ENGAKVTIALRRNTELELPASHVMELSFN 1639
Query: 401 FPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEE 460
+ S + +R I ++ + + + ++ ++++L +E D RN +L+
Sbjct: 1640 WADPSVTGLSSMRGIGLKGEEAERGTALVTQTAKVTPKYFMVALSANEVDAKRNMMLLKG 1699
Query: 461 YRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
++ DIPI Y G + L +I+KG +G +FK A W
Sbjct: 1700 KQWFDIPIVYEGGSRALLSIEKGSEGERVFKDAFASW 1736
>gi|188580209|ref|YP_001923654.1| hypothetical protein Mpop_0941 [Methylobacterium populi BJ001]
gi|179343707|gb|ACB79119.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 493
Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 93/225 (41%), Gaps = 11/225 (4%)
Query: 282 VGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK----GR 337
P+ P A F++ + + + + + + + R
Sbjct: 271 ESPAEKPDAKFSDRVGAEHSEAEARAKPAAPGT---APAQPEVTVSQRAILYEENQSDTR 327
Query: 338 GQSSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVM 395
Q +G +W + + V++ ++ + +MT++ N D +L +H +
Sbjct: 328 AQPIATNGNAVWRTEAVNGGQGEPLQTVLRVNVEFPSAGLTLAMTMRKNLDANLPASHTI 387
Query: 396 EIMFSFPKESQ--DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFR 453
E+ F+ E+ AV ++ + ++ + + + + +N +LI L + D R
Sbjct: 388 ELAFTNSGEAGAKRAVQNIGLLQLKDEEAARGSPVSGLPVRVRENLFLIGLSSLKGDVDR 447
Query: 454 NSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
N+++L ++D+ +TY GQ+ + + +KG GA +SA QW
Sbjct: 448 NTELLLHKNWLDLALTYADGQRAVISFEKGGAGAQAVQSAFTQWR 492
Score = 84.5 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 40/64 (62%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPETDIDLERQALDTA 60
Query: 61 ILQV 64
I ++
Sbjct: 61 IGRL 64
>gi|118588313|ref|ZP_01545722.1| hypothetical protein SIAM614_23567 [Stappia aggregata IAM 12614]
gi|118439019|gb|EAV45651.1| hypothetical protein SIAM614_23567 [Stappia aggregata IAM 12614]
Length = 583
Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats.
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS 344
+ A A + +A + + + +G +
Sbjct: 363 ADSDPAPAATENPVAVPEDNLSAISPDDSAPAPSAAAAADPSVQRSILYEEGEESGGAGT 422
Query: 345 GK---ILWSLQQEKSQGLKGLVI-KGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS 400
++WS+++E + K L + + + + + +K N D SL +H++EI +
Sbjct: 423 AAQGAVVWSVEEETNLDGKALAVLSASVEIPERDVKVDIRIKPNDDTSLPASHLVEIKYE 482
Query: 401 FPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILE 459
FP+ VV++ + M+ T+ + + +S + I+L + RN +L
Sbjct: 483 FPENFAPGDVVNVPGLVMKPTEEARGDALIGASVKVSPGFFWIALSSLPNEQQRNLALLR 542
Query: 460 EYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
E +IDIP+ Y +G++ + T++KG GAD + AI W+
Sbjct: 543 ERGWIDIPMLYENGKRGILTLEKGTVGADAVEKAITAWQA 582
Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++++ + +LPEN R +Y ARN++ +L++ +P L + + +LE+A
Sbjct: 1 MADYYSILKKTIASLPENNGAARRSVYSRARNAIVNQLKAYEPPLAPSEITAEQLRLEEA 60
Query: 61 ILQVEKQNQKS---LHTSKQDKESDIPKSSVTS 90
I +VE + + L + E+ P V++
Sbjct: 61 IRKVEAEAARESLGLSPTVPKVETPAPAPQVSA 93
>gi|148254075|ref|YP_001238660.1| hypothetical protein BBta_2605 [Bradyrhizobium sp. BTAi1]
gi|146406248|gb|ABQ34754.1| hypothetical protein BBta_2605 [Bradyrhizobium sp. BTAi1]
Length = 1680
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 9/211 (4%)
Query: 289 VADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQS-SILSGKI 347
V T ++ G ST G P++ ++ + GK+
Sbjct: 1475 VTAERMTPDVTSTASREGSPGSTITTGNAA----QPMVSHAVLYQEDPQDPGGKRYLGKV 1530
Query: 348 LWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQD 407
W + E + G IKGD+ + D A+++L+ N + + +H++E+ F++P +
Sbjct: 1531 TWRV--EPAAGSVPASIKGDVEI-DKQMKATLSLRPNKESEMPASHILEVKFNWPGDPSH 1587
Query: 408 AVVD-LRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDI 466
A VD L+ +SM+ + + + ++ ++I+L +E D RN +L+ +IDI
Sbjct: 1588 AGVDTLKGVSMKAKEAGRGAALSTLTAKVTPEFFMIALSANEVDKTRNFLLLKGKEWIDI 1647
Query: 467 PITYRSGQKILFTIDKGKKGADIFKSAIMQW 497
PI Y G + + I+KG G F A W
Sbjct: 1648 PIVYNGGSRAVLAIEKGADGERAFTDAFTAW 1678
>gi|148252860|ref|YP_001237445.1| hypothetical protein BBta_1299 [Bradyrhizobium sp. BTAi1]
gi|146405033|gb|ABQ33539.1| hypothetical protein BBta_1299 [Bradyrhizobium sp. BTAi1]
Length = 1763
Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats.
Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 3/207 (1%)
Query: 292 FANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSL 351
A A +G+ + + +GK+ WSL
Sbjct: 1557 TAEVVQAAPDAKPATANEERVTVGQSVAVAAPATAQAFLYHEDPQDPKGKRFAGKVTWSL 1616
Query: 352 QQEKSQGL-KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVV 410
+Q K + V+KG+I + +N A+++L+ N D L +HV+++ F++P ++ +
Sbjct: 1617 EQGKGPRVNAAPVLKGEIEI-ENGMKATLSLRRNDDQELPASHVLDLSFAWPDQT-TGLS 1674
Query: 411 DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITY 470
+R I ++ + + + ++ ++++L +E D RN +L+ ++ DIPI Y
Sbjct: 1675 SMRGIGLKGAEAERGTALATQTARVTPRMFMVALSANEVDAKRNVLLLKGKQWFDIPIVY 1734
Query: 471 RSGQKILFTIDKGKKGADIFKSAIMQW 497
G + L +I+KG G +F A W
Sbjct: 1735 EGGNRALLSIEKGPDGDRVFNDAFANW 1761
>gi|254473130|ref|ZP_05086528.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957851|gb|EEA93053.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 592
Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 284 PSTIPVADFANTSNI-----AFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK--- 335
P+ +D ++T + G + NS E + + + +
Sbjct: 373 PAPATSSDDSSTPQVLPAKEPEPQTAGVETNSVPPAETIGTESEISPVAQQSILYEEALT 432
Query: 336 GRGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVM 395
S G ++W+L + VIK + S MTLK N+D SL +H++
Sbjct: 433 PGAAGSASRGNVVWTLDEVNGT----SVIKAVATLPSRNLSVEMTLKPNSDQSLPASHLL 488
Query: 396 EIMFSFPKES-QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRN 454
E+ F FP+ V + + ++KT++ +D +S + I+L S E+ +N
Sbjct: 489 ELNFIFPEGFDGKGVEKVPGLILKKTESEAGDPLDGAAVKVSDTLFWIALSDSNEEKAKN 548
Query: 455 SKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWE 498
+ L E +ID+P+ Y SG++ + T +KG G + AI W+
Sbjct: 549 LQRLAEREWIDVPLLYNSGRRAMLTFEKGTTGNKVVAQAIKSWK 592
Score = 91.4 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ V+++AV L ENT R +Y+ ARN++ ++L+S P L + + KLE+A
Sbjct: 1 MADYNSVLKKAVAGLQENTGSARRAVYQRARNAIVKQLKSYDPPLSPSQITEEQLKLEEA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTS 90
I +VE + + + K + P + +
Sbjct: 61 IRKVEAEAARESLGLGRSKTTPAPSAPQPT 90
>gi|296446632|ref|ZP_06888573.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296255860|gb|EFH02946.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 408
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 13/227 (5%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGN---PLIGEGRVFIN----KGR 337
+ P + +GG E + + ++G P+ + + +
Sbjct: 184 APEPQTAEEPEEGAKLSDRVGGAEPAAPAETGRAPDQGQKAQPVAVAQKAELWVAAPEEA 243
Query: 338 GQSSILSGKILWSLQQEKSQGLKG--LVIKGDIPMIDNAFSASMTLKCNADISLSITHVM 395
+ G ++W L+ S + I+GDI + A++ ++ N D +LS +H +
Sbjct: 244 SKVKTFPGTVIWRLESLPSGAEQALTPAIRGDIDIPGAKMKAALVIQKNFDPALSASHTI 303
Query: 396 EIMFSF-PKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL-KGSEEDPFR 453
+ F F P V + + MR+ + I + I++N++L+ L G+ E R
Sbjct: 304 NVSFQFAPGGELKGVKTIAPLQMRRPEAQSGEQISGVLVPITENNFLLGLLPGNPE--AR 361
Query: 454 NSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENR 500
N +L ID+P+ +G+ ++KG G +F A+ W +
Sbjct: 362 NLTLLRAPLIIDLPMQLENGRAATIALEKGPAGERVFLDALDAWAGK 408
Score = 89.9 bits (221), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RAV +LP++ PE R +YE AR ++ ++L S++P + + +E + L++A
Sbjct: 1 MADYYSLLSRAVASLPQSAPESRQAVYERARKALFKQLRSIQPPVAEGDIESEGRALDEA 60
Query: 61 ILQVEKQNQK--SLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANI 118
I +VE + + +++ + P + + P + + ++ A
Sbjct: 61 IARVELEAVRGGERPVERKEPPAPPPSAPLRVATERPAAPTPPPGEPVAPPPEIERSAEP 120
Query: 119 LSVQGKSRTNTNLSPKNFSCRLREILSFS 147
+ S + + P L E S S
Sbjct: 121 PLREEGSTPSASQRPAAPLPSLPEPTSNS 149
>gi|217977190|ref|YP_002361337.1| hypothetical protein Msil_1006 [Methylocella silvestris BL2]
gi|217502566|gb|ACK49975.1| hypothetical protein Msil_1006 [Methylocella silvestris BL2]
Length = 634
Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 17/237 (7%)
Query: 268 KITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG 327
KI R+ ++ + P A S+ A + + + E
Sbjct: 411 KIVDRIGGGQNQPQDSAAGSPPATSPAPSSAARGAPTAVEPETQSARRAALLVEAPEEPN 470
Query: 328 EGRVFINKGRGQSSILSGKILWSLQQEKSQGLKGL--VIKGDIPMIDNAFSASMTLKCNA 385
+ R F+ G + W + S L + + + + MTL+ N
Sbjct: 471 KVRTFL-----------GAVNWKVDNVTSGPNDPLSMAVHATVEIPEEKLEIVMTLQKNF 519
Query: 386 DISLSITHVMEIMFSFPKESQ-DAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL 444
D SL +H M+I F +S +V + MR D + ++ I+ N++L+ L
Sbjct: 520 DSSLPASHTMKIQFIEGADSPLGSVQQISVPQMRLEDTATGDALNGVPVQITDNTFLVGL 579
Query: 445 -KGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENR 500
GS E N +L+ +ID+PI +G+ T +KG G AI W+ +
Sbjct: 580 TSGSPE--AGNLDLLKSRGWIDVPILLSNGKIAKLTFEKGPAGDRAIDDAIAAWKGQ 634
Score = 86.4 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RAV L + TP+ RS IY+ ARN++ +L + P + E ++R+ LE A
Sbjct: 1 MADYYPLLARAVAGLADPTPQARSAIYDRARNALLGQLRRLDPPIADEEIDRESVALEDA 60
Query: 61 ILQVEKQNQ 69
+ ++E
Sbjct: 61 VARLEADFT 69
>gi|323137337|ref|ZP_08072415.1| hypothetical protein Met49242DRAFT_1803 [Methylocystis sp. ATCC
49242]
gi|322397324|gb|EFX99847.1| hypothetical protein Met49242DRAFT_1803 [Methylocystis sp. ATCC
49242]
Length = 413
Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats.
Identities = 80/500 (16%), Positives = 156/500 (31%), Gaps = 92/500 (18%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ +I RA+ LP+ T E AR +V R ++ L Q ++
Sbjct: 1 MADYYSLISRAISALPQPTTE--------ARQAVYER--------ARKALVNQLRNIQPP 44
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
+ + + E + ++T E +++S
Sbjct: 45 VAE-----------ADIAAEGRALEEAITRLEIETAAKGAQALSP--------------- 78
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
P + + A D++ R LA
Sbjct: 79 ---------GAQPSPQPAPSMKREATPPPAAPARPPEPPKAPAPPRDENAAWRETLAAAE 129
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
P + L L+ + L+ L+G+ +++ + +
Sbjct: 130 KAPIEND-SHPREPQRPAAPLPLPPAPQLASRRIIAVSAVLVALIGVVGVLAWQLRERPE 188
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
+ E+ N + K R VD G + A
Sbjct: 189 DLAKLKPEETKTAENAEAG--------KFDDR-------VDGGAKSAAPA---------- 223
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
G S + ++ L +V I + ++W L+ +
Sbjct: 224 ---ASGKRASNLPVAQRAEMWVASLQEPAKV--------DKIYNANVVWRLENVGGGPGE 272
Query: 361 GL--VIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFS-FPKESQDAVVDLRRISM 417
+ I+GD+ + D ++ + N D +LS +H + + F+ P V + I M
Sbjct: 273 PVGSAIRGDVDIPDAKLKLTLLFRKNTDTALSASHTINVTFTPAPGSPVGGVKAIGPIQM 332
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKIL 477
R+ D + I++N++LI L + + RN +L +D+P+ + G+
Sbjct: 333 RRVDAQSGEKVAGIPVPITENNFLIGLMRGDRE-QRNVTLLRSLPLLDLPMQFNDGRAAT 391
Query: 478 FTIDKGKKGADIFKSAIMQW 497
++KG G +F AI W
Sbjct: 392 INMEKGATGERVFADAIDAW 411
>gi|23008316|ref|ZP_00049812.1| hypothetical protein Magn03003422 [Magnetospirillum magnetotacticum
MS-1]
Length = 124
Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 386 DISLSITHVMEIMFSFPKESQDAVV-DLRRISMRKTDNSPSVLIDSNIFVISKNSYLISL 444
D +L +H +E+ F+ +V ++ + ++ +++ + + N +LI L
Sbjct: 10 DATLPASHTIELAFTNSDSGAKRIVQNIGLLQLKDEESARGSPVSGLPVRVRDNLFLIGL 69
Query: 445 KGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWEN 499
+ D RN+ +L ++D+ +TY +GQ+ + + +KG GA ++A QW +
Sbjct: 70 SSLKSDIDRNTDLLLHKNWLDLAVTYTNGQRAVISFEKGNAGAQAMQNAFAQWRD 124
>gi|218459713|ref|ZP_03499804.1| putative transmembrane protein [Rhizobium etli Kim 5]
Length = 103
Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 406 QDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFID 465
++ ++RISM++T+ + + I+ + ++I+L + N ++ +ID
Sbjct: 2 GGSIESVQRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWID 61
Query: 466 IPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
IPITYR+G++ L T++KG G D F +AI +W +
Sbjct: 62 IPITYRNGRRALLTMEKGGTGTDAFNTAIKEWTALGD 98
>gi|218462972|ref|ZP_03503063.1| hypothetical protein RetlK5_27598 [Rhizobium etli Kim 5]
Length = 103
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%)
Query: 413 RRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRS 472
+RISM++T+ + + I+ + ++I+L + N ++ +IDIPITYR+
Sbjct: 9 QRISMKRTEQDRGDALIAVPAKITDDFHMIALNDYPDARKANLDLMSTRNWIDIPITYRN 68
Query: 473 GQKILFTIDKGKKGADIFKSAIMQWENRSN 502
G++ L T++KG G D F +AI +W +
Sbjct: 69 GRRALLTMEKGGTGTDAFNTAIKEWTALGD 98
>gi|260467080|ref|ZP_05813260.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259029189|gb|EEW30485.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 318
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 62/314 (19%), Positives = 103/314 (32%), Gaps = 24/314 (7%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF+ V+++ +DNL + +PE R+ +Y+ AR+++A ++ P L +Q LE A
Sbjct: 1 MADFVAVLKKTIDNLSDQSPEMRARVYDKARSTIAAKIALRDPPLSPSDAAKQKRGLEDA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I VE+ KS+ + + ENIF S N ++ AN+
Sbjct: 61 ISSVERDYTKSVPETD----------PLAELENIFSSIDRNKNQS----NHTRQPANV-- 104
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGI- 179
+ K R + +SV P + DK+
Sbjct: 105 EPSWPAPAAAPTAKPEPYRPAPPPAAKAEPSWPKPASVQPASFNLADKNLPGMDADQEDD 164
Query: 180 ----FSFPTGSIFWSVHNYFF--NKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSY 233
F + R +A+ + + I L A G
Sbjct: 165 QPDVFPNDDEPATADTFQRLRPAERKRSYGGLITAVVALLVVAGGGYGIWLNKDAFGKML 224
Query: 234 SIGKSKGSITHFLRRESLDGGNVDKKNVFSGIR-PKITRRLLEDGSEVDVGPSTIPVADF 292
+ SK + T ++ +G K T+RL +G E D GP+
Sbjct: 225 GLDGSKVAKTEPVKPAPAKPATDAATPPAAGAEATKFTQRLTPEGGETDPGPAGGQSGIG 284
Query: 293 ANTSNIAFKNYIGG 306
S A
Sbjct: 285 EGESVAALTTPPTA 298
>gi|218672898|ref|ZP_03522567.1| hypothetical protein RetlG_15348 [Rhizobium etli GR56]
Length = 321
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 57/85 (67%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPK 85
I +VE ++ ++L + P+
Sbjct: 61 IREVEGEHSEALSLDEAAVAVAAPE 85
>gi|218661960|ref|ZP_03517890.1| hypothetical protein RetlI_21973 [Rhizobium etli IE4771]
Length = 94
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 58/86 (67%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ ++L + + P +
Sbjct: 61 IREVEGEHSEALSVGEASEAVAAPGA 86
>gi|218514056|ref|ZP_03510896.1| hypothetical protein Retl8_10302 [Rhizobium etli 8C-3]
Length = 182
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +VE ++ ++L + P+
Sbjct: 61 IREVEGEHSEALSVDEAAVAIAAPEP 86
>gi|218680745|ref|ZP_03528642.1| putative transmembrane protein [Rhizobium etli CIAT 894]
Length = 111
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSS 87
I +VE ++ ++L P+ S
Sbjct: 61 IREVEGEHSEALPLDASAAAVAAPEPS 87
>gi|218509560|ref|ZP_03507438.1| hypothetical protein RetlB5_19713 [Rhizobium etli Brasil 5]
Length = 179
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DFI VI+RAVD L ENTPE R +YE AR +V R+LE+MKPR P+ +L+RQ KLE A
Sbjct: 1 MADFIAVIRRAVDGLAENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAA 60
Query: 61 ILQVEKQNQKSLHTS 75
I +VE ++ ++L
Sbjct: 61 IREVEGEHSEALSLD 75
>gi|46205078|ref|ZP_00049064.2| hypothetical protein Magn03002378 [Magnetospirillum
magnetotacticum MS-1]
Length = 303
Score = 94.9 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M D+ ++ RA+D LP+ +P R +Y+ AR+++ +L S+ P +P+ ++ + L+ A
Sbjct: 1 MADYYPLLARALDALPDRSPALRRAVYDRARSALIAQLRSLDPPVPEADIDLERQALDTA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTS 90
I ++E + + + T+ ++ E P+ +
Sbjct: 61 IQRLETEYEPA--TASKEPEVAPPQIPSPA 88
>gi|148257382|ref|YP_001241967.1| hypothetical protein BBta_6136 [Bradyrhizobium sp. BTAi1]
gi|146409555|gb|ABQ38061.1| hypothetical protein BBta_6136 [Bradyrhizobium sp. BTAi1]
Length = 277
Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 7/223 (3%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
D+ +++ RA++NLP++ ERR+ +Y+ AR+++ +LE+M P + + ++ + L+ A+
Sbjct: 26 ADYFILLSRAMENLPDSNAERRAEVYQSARHALLTQLEAMNPPVSRSRIKAEQRALDDAV 85
Query: 62 LQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSV 121
+E + + + + P F S ++ + +
Sbjct: 86 ETIETRALSAPLDDPEPPVTLAPGH----FPRFFAANSDVPTVSASTTHDDDQDPAMAQS 141
Query: 122 QGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFS 181
Q S+ + + RL EI Q + V A I D + A +
Sbjct: 142 QFHSKFSARAVEEKPMSRLDEINRVLRKLQSDS-FGVEACALISEDGLMIASVLAADMEE 200
Query: 182 FPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIIL 224
+ ++ + L S L E + + +++
Sbjct: 201 TRVAGMTATLLSLGGRAAMEL--GRSHLQEVIIRGESGYAVLV 241
>gi|146342453|ref|YP_001207501.1| hypothetical protein BRADO5612 [Bradyrhizobium sp. ORS278]
gi|146195259|emb|CAL79284.1| hypothetical protein BRADO5612 [Bradyrhizobium sp. ORS278]
Length = 273
Score = 89.5 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 11/223 (4%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
D+ +++ RA++NLPE++ ERR+ +Y+ AR ++ +LE+M P + + ++ + L+ A+
Sbjct: 26 ADYFILLSRAMENLPESSAERRAEVYQSARQALVSQLEAMHPPVSRSRIKAEQRALDDAV 85
Query: 62 LQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSV 121
+E + + + D P V+S + P + ++ + S
Sbjct: 86 DTIETRALTAEDAADSSLVPDTP--PVSSSD-----PDRSPMFVSTAHDEAEDPVMAHS- 137
Query: 122 QGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFS 181
Q +S+ + + RL EI Q + V A I D + A +
Sbjct: 138 QFQSKFSPRAVEEKPMSRLDEINRVLRKLQSDS-FGVEACALISEDGLMIASVLAADMEE 196
Query: 182 FPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIIL 224
+ ++ + L S L E + + +++
Sbjct: 197 TRVAGMTATLLSLGGRAAMEL--GRSHLQEVIIRGESGYAVLV 237
>gi|218658407|ref|ZP_03514337.1| hypothetical protein RetlI_01427 [Rhizobium etli IE4771]
Length = 50
Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 458 LEEYRFIDIPITYRSGQKILFTIDKGKKGADIFKSAIMQWENRSN 502
+ +IDIPITYR+G++ L T++KG G D F +AI +W +
Sbjct: 1 MSTRNWIDIPITYRNGRRALLTMEKGGTGTDAFNTAIKEWTALGD 45
>gi|222084776|ref|YP_002543305.1| regulator protein [Agrobacterium radiobacter K84]
gi|221722224|gb|ACM25380.1| regulator protein [Agrobacterium radiobacter K84]
Length = 456
Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 6 LVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVE 65
I+ A++ PE R+ +Y+ AR ++ L ++ Q +LE+ I +E
Sbjct: 52 AAIRNALERSDRANPETRARVYQSARQALEAGLRKQDV-TDINVISAQRQRLEETIRAIE 110
Query: 66 KQNQKSLHTSKQDKESDIPKSS 87
+ + + E + P
Sbjct: 111 SEERAHPPQTPAPIEPEAPHIP 132
>gi|150395344|ref|YP_001325811.1| hypothetical protein Smed_0116 [Sinorhizobium medicae WSM419]
gi|150026859|gb|ABR58976.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 385
Score = 53.7 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++ ++ E R+ IY+ AR ++ L+ + P E++ Q ++LE
Sbjct: 1 MSGLETAIRNALERSDRSSAEVRARIYQSARQALENGLQKQQIEDP-EVISVQRHRLEAV 59
Query: 61 ILQVEKQNQKSL------------------HTSKQDKESDIPKSSVTSKENIFLEPRLRS 102
I +E + + +L H ++ E+ + + +K +
Sbjct: 60 IRAIEMEERAALKERAQTPVVNLDEVTARGHAVERGPEAPTRRPELETKPEERSPAQTDG 119
Query: 103 ISSILRSNKHKKLANILSVQGKSRTNT 129
LR + LA + R+
Sbjct: 120 GLGALRPERDGPLAATRAEGSDGRSEA 146
>gi|227820726|ref|YP_002824696.1| possible BirS-like protein incolved in biotin regulatory network
[Sinorhizobium fredii NGR234]
gi|227339725|gb|ACP23943.1| possible BirS-like protein incolved in biotin regulatory network
[Sinorhizobium fredii NGR234]
Length = 390
Score = 52.5 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++ + E R+ IY+ AR ++ L+ + P +I+ +Q ++LE
Sbjct: 1 MSGLETAIRNALERSERSNAEVRARIYQSARQALENGLKKQEIEDP-DIIAKQRHRLEAV 59
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKS 86
I +E + + +L + +
Sbjct: 60 IHAIETEERAALKARVASPVVSLAEV 85
>gi|116250310|ref|YP_766148.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254958|emb|CAK06032.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 395
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 1/170 (0%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A+DN + PE R+ IY+ AR ++ L E++ ++LE
Sbjct: 1 MSGLETAIRTALDNSDRDNPEVRARIYQSARQALEAGLRKQDI-TDTEVVAHHRHRLEST 59
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +E + + LH ++ E +P + + +
Sbjct: 60 IHAIEGEERDRLHPRQRPPEVPVPPVVEMPAPPVHQADVDQFDGPAVSGETRAAEVVQRR 119
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSR 170
S + + + Q + P A K R
Sbjct: 120 GDESSLDDVHAGSTDHLAAAPVGEERLARGQRATNMDFRPERAAGRRKPR 169
>gi|209547774|ref|YP_002279691.1| regulator protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533530|gb|ACI53465.1| putative regulator protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 399
Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A+DN + PE R+ IY+ AR ++ L E++ ++LE
Sbjct: 1 MSGLETAIRTALDNSDRDNPEVRARIYQSARQALEAGLRKQDI-TDTEVVAHHRHRLEST 59
Query: 61 ILQVEKQNQKSLHTSKQ 77
I +E + + LH ++
Sbjct: 60 IHAIESEERDRLHPRQR 76
>gi|15964259|ref|NP_384612.1| hypothetical protein SMc02149 [Sinorhizobium meliloti 1021]
gi|307306997|ref|ZP_07586736.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307320651|ref|ZP_07600064.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15073435|emb|CAC41943.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306893686|gb|EFN24459.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306901937|gb|EFN32536.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 386
Score = 50.6 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++ + E R+ IY+ AR ++ L+ + P E++ Q +LE
Sbjct: 1 MSGLETAIRNALERSDRSNAEIRARIYQSARQALENGLQKQQIEDP-EVISVQRQRLEAV 59
Query: 61 ILQVEKQNQKSLHTSKQDKESDI 83
I +E + + +L Q +
Sbjct: 60 IRAIEMEERAALKERAQTPVVSL 82
>gi|241202929|ref|YP_002974025.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240856819|gb|ACS54486.1| putative transcriptional regulator protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 394
Score = 50.6 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 2/170 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++N + PE R+ IY+ AR ++ L E++ ++LE
Sbjct: 1 MSGLETAIRTALENSDRDNPEVRARIYQSARQALEAGLRKQDI-TDTEVVAHHRHRLEST 59
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
I +E + + LH ++ E +P + ++ S + + +
Sbjct: 60 IHAIEGEERDRLHPRQRPPEVPVPPVVEMPAPPVHQAEADEFDGPMV-SGETRAPEVMHR 118
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSR 170
S + + + Q + P A K R
Sbjct: 119 GDESSLDDVHAGNTDHLAAAPVGEERLARGQRATNMDFRPERAAGRRKPR 168
>gi|14582150|gb|AAK69393.1|AF274306_2 possible regulatory protein BirS [Sinorhizobium meliloti]
Length = 435
Score = 50.6 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A++ + E R+ IY+ AR ++ L+ + P E++ Q +LE I +E +
Sbjct: 57 IRNALERSDRSNAEIRARIYQSARQALENGLQKQQIEDP-EVISVQRQRLEAVIRAIEME 115
Query: 68 NQKSLHTSKQDKESDI 83
+ +L Q +
Sbjct: 116 ERAALKERAQTPVVSL 131
>gi|304392356|ref|ZP_07374297.1| putative regulator protein [Ahrensia sp. R2A130]
gi|303295460|gb|EFL89819.1| putative regulator protein [Ahrensia sp. R2A130]
Length = 402
Score = 49.8 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M F +I+ A+ P RR IY +R ++ R L + +L Q ++LE A
Sbjct: 1 MAGFEDLIRGALKKQGTPDPARREAIYASSRTALGRML-AQNDKLDTAAKSLQESRLEDA 59
Query: 61 ILQVEKQNQ 69
I +E
Sbjct: 60 IKSIEADYA 68
>gi|218679573|ref|ZP_03527470.1| putative regulator protein [Rhizobium etli CIAT 894]
Length = 167
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A+DN + PE R+ IY+ AR ++ L E++ ++LE
Sbjct: 1 MSGLETAIRTALDNSERDNPEVRARIYQSARQALEAGLRKQDI-TDTEVVAHHRHRLETT 59
Query: 61 ILQVEKQNQKSLHTSKQ 77
I +E + + LH ++
Sbjct: 60 IHAIESEERDRLHPRQR 76
>gi|86356160|ref|YP_468052.1| putative regulator protein [Rhizobium etli CFN 42]
gi|86280262|gb|ABC89325.1| putative regulator protein [Rhizobium etli CFN 42]
Length = 417
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A++N + PE R+ IY+ AR ++ L + + ++LE I +E +
Sbjct: 20 IRTALENADRDNPEVRARIYQSARQALEAGLRKQDI-TDADAVAHHRHRLESTIHAIESE 78
Query: 68 NQKSLHTSKQ 77
+ LH ++
Sbjct: 79 ERDRLHPRQR 88
>gi|218673775|ref|ZP_03523444.1| putative transcriptional regulator protein [Rhizobium etli GR56]
Length = 241
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++N+ + PE R+ IY+ AR ++ L + + ++LE
Sbjct: 1 MSGLETAIRTALENVDRDNPEVRARIYQSARQALEAGLRKQDI-TDADAVAHHRHRLETT 59
Query: 61 ILQVEKQNQKSLHTSKQ 77
I +E + + LH ++
Sbjct: 60 IHAIEGEERDRLHPRQR 76
>gi|325291850|ref|YP_004277714.1| hypothetical protein AGROH133_03680 [Agrobacterium sp. H13-3]
gi|325059703|gb|ADY63394.1| hypothetical protein AGROH133_03680 [Agrobacterium sp. H13-3]
Length = 381
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++ + E R+ IY+ +R ++ L P +I+ +Q +LE
Sbjct: 1 MSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGIDDP-QIVGQQRQRLESL 59
Query: 61 ILQVE-KQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANIL 119
I +E ++ + L +Q P+S+ S+ + +S H +A
Sbjct: 60 IHVIENEERNRLLDRVEQQLRPPAPESA---------AHDGPSVDPVSQSQHHGDMAVEP 110
Query: 120 SVQGKSRTN---TNLSPKNFSCRLRE 142
++G++R +P+ S R
Sbjct: 111 ELRGETRDVRPGAAAAPEPLSAGRRN 136
>gi|190890208|ref|YP_001976750.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
gi|190695487|gb|ACE89572.1| putative transcriptional regulator protein [Rhizobium etli CIAT
652]
Length = 399
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M I+ A++N + PE R+ IY+ AR ++ L + + ++LE
Sbjct: 1 MSGLETAIRTALENADRDNPEVRARIYQSARQALEAGLRKQDI-TDADAVAHHRHRLEST 59
Query: 61 ILQVEKQNQKSLHTSKQ 77
I +E + + LH ++
Sbjct: 60 IHAIEGEERDRLHPRQR 76
>gi|254720074|ref|ZP_05181885.1| hypothetical protein Bru83_11148 [Brucella sp. 83/13]
gi|265985079|ref|ZP_06097814.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306839422|ref|ZP_07472235.1| Hypothetical protein BROD_2281 [Brucella sp. NF 2653]
gi|264663671|gb|EEZ33932.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306405496|gb|EFM61762.1| Hypothetical protein BROD_2281 [Brucella sp. NF 2653]
Length = 340
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKE--SDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGK 124
K + +E D P + + E SS +R ++ K+ A L +G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSAMAESTPVLDSSDIRPMSRKKRPAADLGYEGG 126
Query: 125 SRTNTNL 131
+ N
Sbjct: 127 ASRKDNK 133
>gi|294853402|ref|ZP_06794074.1| hypothetical protein BAZG_02361 [Brucella sp. NVSL 07-0026]
gi|294819057|gb|EFG36057.1| hypothetical protein BAZG_02361 [Brucella sp. NVSL 07-0026]
Length = 340
Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 5/135 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKESDIPKS----SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQG 123
K + +E + V P L S S K + A++ G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 124 KSRTNTNLSPKNFSC 138
SR + ++
Sbjct: 127 TSRKDHKKKRRSPFY 141
>gi|23500558|ref|NP_699998.1| hypothetical protein BRA0828 [Brucella suis 1330]
gi|161620886|ref|YP_001594772.1| hypothetical protein BCAN_B0844 [Brucella canis ATCC 23365]
gi|163844948|ref|YP_001622603.1| hypothetical protein BSUIS_B0820 [Brucella suis ATCC 23445]
gi|260567910|ref|ZP_05838379.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|23464194|gb|AAN34003.1| conserved hypothetical protein [Brucella suis 1330]
gi|161337697|gb|ABX64001.1| Hypothetical protein BCAN_B0844 [Brucella canis ATCC 23365]
gi|163675671|gb|ABY39781.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|260154575|gb|EEW89656.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
Length = 340
Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKE--SDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGK 124
K + +E D P + + E S +R ++ K+ A L +G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 125 SRTNTNL 131
+ +
Sbjct: 127 TSRKDHK 133
>gi|225686591|ref|YP_002734563.1| hypothetical protein BMEA_B0807 [Brucella melitensis ATCC 23457]
gi|256262269|ref|ZP_05464801.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|225642696|gb|ACO02609.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|263091987|gb|EEZ16293.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|326410982|gb|ADZ68046.1| conserved hypothetical protein [Brucella melitensis M28]
gi|326554273|gb|ADZ88912.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 340
Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKE--SDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGK 124
K + +E D P + + E S +R ++ K+ A L +G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 125 SRTNTNL 131
+ +
Sbjct: 127 TSRKDHK 133
>gi|17988806|ref|NP_541439.1| hypothetical protein BMEII0461 [Brucella melitensis bv. 1 str. 16M]
gi|62317341|ref|YP_223194.1| hypothetical protein BruAb2_0404 [Brucella abortus bv. 1 str.
9-941]
gi|83269319|ref|YP_418610.1| hypothetical protein BAB2_0407 [Brucella melitensis biovar Abortus
2308]
gi|148558264|ref|YP_001257769.1| hypothetical protein BOV_A0777 [Brucella ovis ATCC 25840]
gi|189022593|ref|YP_001932334.1| hypothetical protein BAbS19_II03830 [Brucella abortus S19]
gi|225629295|ref|ZP_03787328.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237816894|ref|ZP_04595886.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254690838|ref|ZP_05154092.1| hypothetical protein Babob68_11908 [Brucella abortus bv. 6 str.
870]
gi|254698620|ref|ZP_05160448.1| hypothetical protein Babob28_13214 [Brucella abortus bv. 2 str.
86/8/59]
gi|254700041|ref|ZP_05161869.1| hypothetical protein Bsuib55_04162 [Brucella suis bv. 5 str. 513]
gi|254705693|ref|ZP_05167521.1| hypothetical protein BpinM_01458 [Brucella pinnipedialis
M163/99/10]
gi|254710925|ref|ZP_05172736.1| hypothetical protein BpinB_11825 [Brucella pinnipedialis B2/94]
gi|254712602|ref|ZP_05174413.1| hypothetical protein BcetM6_04342 [Brucella ceti M644/93/1]
gi|254715674|ref|ZP_05177485.1| hypothetical protein BcetM_04362 [Brucella ceti M13/05/1]
gi|254732067|ref|ZP_05190645.1| hypothetical protein Babob42_13014 [Brucella abortus bv. 4 str.
292]
gi|256015592|ref|YP_003105601.1| hypothetical protein BMI_II821 [Brucella microti CCM 4915]
gi|256029307|ref|ZP_05442921.1| hypothetical protein BpinM2_01383 [Brucella pinnipedialis
M292/94/1]
gi|256043703|ref|ZP_05446626.1| hypothetical protein Bmelb1R_04382 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256058996|ref|ZP_05449207.1| hypothetical protein Bneo5_01373 [Brucella neotomae 5K33]
gi|256111254|ref|ZP_05452285.1| hypothetical protein Bmelb3E_01448 [Brucella melitensis bv. 3 str.
Ether]
gi|256253520|ref|ZP_05459056.1| hypothetical protein BcetB_04327 [Brucella ceti B1/94]
gi|256256022|ref|ZP_05461558.1| hypothetical protein Babob9C_01363 [Brucella abortus bv. 9 str.
C68]
gi|260167601|ref|ZP_05754412.1| hypothetical protein BruF5_04292 [Brucella sp. F5/99]
gi|260544574|ref|ZP_05820395.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260564891|ref|ZP_05835376.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260756418|ref|ZP_05868766.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260759850|ref|ZP_05872198.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260763089|ref|ZP_05875421.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882241|ref|ZP_05893855.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261217422|ref|ZP_05931703.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261220650|ref|ZP_05934931.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313113|ref|ZP_05952310.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318507|ref|ZP_05957704.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261320296|ref|ZP_05959493.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261322940|ref|ZP_05962137.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261750523|ref|ZP_05994232.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261757023|ref|ZP_06000732.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|265986307|ref|ZP_06098864.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265990123|ref|ZP_06102680.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265992767|ref|ZP_06105324.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|297249380|ref|ZP_06933081.1| hypothetical protein BAYG_02128 [Brucella abortus bv. 5 str. B3196]
gi|17984625|gb|AAL53703.1| hypothetical protein BMEII0461 [Brucella melitensis bv. 1 str. 16M]
gi|62197534|gb|AAX75833.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82939593|emb|CAJ12573.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
2308]
gi|148369549|gb|ABQ62421.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
gi|189021167|gb|ACD73888.1| hypothetical protein BAbS19_II03830 [Brucella abortus S19]
gi|225615791|gb|EEH12840.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|237787707|gb|EEP61923.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|255998252|gb|ACU49939.1| hypothetical protein BMI_II821 [Brucella microti CCM 4915]
gi|260097845|gb|EEW81719.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260152534|gb|EEW87627.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260670168|gb|EEX57108.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673510|gb|EEX60331.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260676526|gb|EEX63347.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260871769|gb|EEX78838.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260919234|gb|EEX85887.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260922511|gb|EEX89079.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292986|gb|EEX96482.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261297730|gb|EEY01227.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261298920|gb|EEY02417.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302139|gb|EEY05636.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261737007|gb|EEY25003.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|261740276|gb|EEY28202.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|262763637|gb|EEZ09669.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000792|gb|EEZ13482.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|264658504|gb|EEZ28765.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|297173249|gb|EFH32613.1| hypothetical protein BAYG_02128 [Brucella abortus bv. 5 str. B3196]
Length = 340
Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKE--SDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGK 124
K + +E D P + + E S +R ++ K+ A L +G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 125 SRTNTNL 131
+ +
Sbjct: 127 TSRKDHK 133
>gi|306841648|ref|ZP_07474339.1| Hypothetical protein BIBO2_1430 [Brucella sp. BO2]
gi|306288289|gb|EFM59665.1| Hypothetical protein BIBO2_1430 [Brucella sp. BO2]
Length = 340
Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 5/135 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E++ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQRREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKESDIPKS----SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQG 123
K + +E + V P L S S K + A++ G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 124 KSRTNTNLSPKNFSC 138
SR + +
Sbjct: 127 TSRKDYKKKRHSPFY 141
>gi|222147395|ref|YP_002548352.1| hypothetical protein Avi_0499 [Agrobacterium vitis S4]
gi|221734385|gb|ACM35348.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 429
Score = 47.9 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A+D + E R+ IY+ AR ++ L+ P+ + E Q ++LE I +E+Q
Sbjct: 15 IRSALDRSERSRAEVRARIYQSARQALEAGLKKQNVNDPETVAE-QRHRLEATIHAIEQQ 73
Query: 68 NQKSLHTSKQ----------------DKESDIPKSSVTSKENIFLEPRLRSIS-SILRSN 110
+ L S P+ S P S S S
Sbjct: 74 ERARLKAEAAVEPVSRAPVPPPTSPPLSTSTPPRGPAPSVSADANAPGDDSASLSFGVDR 133
Query: 111 KHKKLANILSVQGKSRTNTNLSPK--------NFSCRLREILSFSVNTQHEYDSSVSPVA 162
H + A R + +FS R + S +++ + V +
Sbjct: 134 DHGRPAEPSLDLDDVRAERHDRADPAGMSSFASFSARPKSAEPESAEDEYDEEP-VRGMR 192
Query: 163 AIEHDKSRLRRGKLAGIF 180
A K R RRG L+ +
Sbjct: 193 AEPVAKPRRRRGVLSRLL 210
>gi|254695852|ref|ZP_05157680.1| hypothetical protein Babob3T_14745 [Brucella abortus bv. 3 str.
Tulya]
gi|261216272|ref|ZP_05930553.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260917879|gb|EEX84740.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 340
Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R + + L E+ KL+ AI ++E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAM-ATNTALSAAQKEQSREKLKDAISRIEEE 66
Query: 68 NQKSLHTSKQDKE--SDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGK 124
K + +E D P + + E S +R ++ K+ A L +G
Sbjct: 67 FAKRHQDGEAQREPSLDSPHQNDPVLGSSMAESTPVLDSGDIRPMSRKKRPAADLGYEGG 126
Query: 125 SRTNTNL 131
+ +
Sbjct: 127 TSRKDHK 133
>gi|153011364|ref|YP_001372578.1| hypothetical protein Oant_4045 [Ochrobactrum anthropi ATCC 49188]
gi|151563252|gb|ABS16749.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 341
Score = 47.1 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R L + L E++ KL+ AI +E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERALAA-NTALSDVQKEQRRQKLKDAISHIEQE 66
Query: 68 NQKSLH-TSKQDKESDIP--KSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQG 123
+ T + D D P + + + P L + S + K+ L +G
Sbjct: 67 FKTGGDKTERHDPSLDAPHREDPILGGKAEEASPALDTSDIRATSRQKKRSNADLGYEG 125
>gi|319779824|ref|YP_004139300.1| hypothetical protein Mesci_0076 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317165712|gb|ADV09250.1| hypothetical protein Mesci_0076 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 415
Score = 47.1 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 53/151 (35%), Gaps = 8/151 (5%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A++ R +Y A ++ R L++ P + E+ ++ ++ I ++E +
Sbjct: 44 IRNALEKGNAEDRAFRERVYRSAFAALDRALQA-NPGVTVEVAIKRRKAIQAKITEIESE 102
Query: 68 NQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRT 127
++ + D P + + +E ++ S + + + A
Sbjct: 103 FLPAVP--DVGPQGDAPAVELGADSAPAVETGRQASSPDVVVDGPVQSAA----DAPRSR 156
Query: 128 NTNLSPK-NFSCRLREILSFSVNTQHEYDSS 157
+ P L + + ++ ++
Sbjct: 157 VLPVVPDIMPDASLPDAPAIDMSVPAAAGAT 187
>gi|170751435|ref|YP_001757695.1| hypothetical protein Mrad2831_5054 [Methylobacterium
radiotolerans JCM 2831]
gi|170657957|gb|ACB27012.1| conserved hypothetical protein [Methylobacterium radiotolerans
JCM 2831]
Length = 94
Score = 46.0 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF ++ +A+ P T E R +Y R +V R E + Q + +E+
Sbjct: 1 MSDFSDLVAKAI--QPSMTREEREAVYTVVRQAVLRLQEREAFPPDDPRVALQRHLVEET 58
Query: 61 ILQVEKQNQK 70
I VE +
Sbjct: 59 IRDVEGDVAR 68
>gi|110632395|ref|YP_672603.1| hypothetical protein Meso_0033 [Mesorhizobium sp. BNC1]
gi|110283379|gb|ABG61438.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 341
Score = 45.6 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A++ N R +Y A ++ R ++ + LP+E + R+ +++ AI+ VE++
Sbjct: 8 IRTALEKGDANDRAFREKVYRQAFAALERSFQARR-DLPEEDMHRRREQMKAAIIDVERE 66
Query: 68 NQKSLHTSKQDKESDIPKSSVTS 90
++ ++ P + +
Sbjct: 67 YV----AAESNQTQPFPTAPSPT 85
>gi|260462038|ref|ZP_05810283.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032285|gb|EEW33551.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 381
Score = 45.6 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A++ R +Y A ++ R L++ P + E+ ++ ++ I ++E +
Sbjct: 8 IRNALEKGNAEDRAFRERVYRSAFAALDRALQA-NPGVTVEMAIKRRKSIQATITEIESE 66
Query: 68 NQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRT 127
++ E D P + +E +S S + + A+
Sbjct: 67 FLPAVP--DVGLEVDAPAAEPAPGAAPAIEIGDKSPSPAAAVDSPAQPAS----DAPRSR 120
Query: 128 NTNLSPKNF 136
+ P
Sbjct: 121 VLPVVPDIM 129
>gi|159185425|ref|NP_353446.2| hypothetical protein Atu8121 [Agrobacterium tumefaciens str. C58]
gi|159140673|gb|AAK86231.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 399
Score = 45.2 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVE-K 66
I+ A++ + E R+ IY+ +R ++ L P +++ +Q +LE I +E +
Sbjct: 25 IRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGIDDP-QVVAQQRQRLESLIHLIENE 83
Query: 67 QNQKSLHTSKQDKESDIPKSSV 88
+ + L +Q +S V
Sbjct: 84 ERNRLLDRVEQQLRPPASESPV 105
>gi|262405619|ref|ZP_06082169.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644434|ref|ZP_06722197.1| sigma factor regulatory protein, FecR/PupR family [Bacteroides
ovatus SD CC 2a]
gi|294810429|ref|ZP_06769086.1| sigma factor regulatory protein, FecR/PupR family [Bacteroides
xylanisolvens SD CC 1b]
gi|262356494|gb|EEZ05584.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292640269|gb|EFF58524.1| sigma factor regulatory protein, FecR/PupR family [Bacteroides
ovatus SD CC 2a]
gi|294442394|gb|EFG11204.1| sigma factor regulatory protein, FecR/PupR family [Bacteroides
xylanisolvens SD CC 1b]
Length = 408
Score = 45.2 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 59/385 (15%), Positives = 126/385 (32%), Gaps = 59/385 (15%)
Query: 119 LSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAG 178
L + K + N+ + + + + Q E + ++ ++ +L+ G+
Sbjct: 4 LKRKNKMKKFENVYQDAALMKKALLGEANESEQQELEKRLAECPDLQKVYEQLQNGETLR 63
Query: 179 IFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKS 238
+ F NY K +E + K I +A V IG S
Sbjct: 64 VA-------FEEYKNYSSKKAYESFLQKIGQTEPEVIKKSRAFRIWWSVAAAVVLVIGLS 116
Query: 239 K-GSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTI---------- 287
S + ES + + G++ + L DGS +DV +
Sbjct: 117 FYMSNYGSIEEES-------RPLIQPGVQQ--AQLTLPDGSIIDVHKKEVNVIVDGVQVK 167
Query: 288 ----------PVADFANTSNIAFKNYIGGD------ENSTFVLGKKEIEEGNPLIGEGRV 331
++ K I + +T VL N
Sbjct: 168 YKEGVLSYKPTATTQYTEKSVVEKPVISNELVIPRGGENTVVLADGTTVHLNAGSKLTYP 227
Query: 332 FINKGRGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSI 391
G+ + L G+ + + Q++S G++ ++ AF+ + D S+
Sbjct: 228 VRFVGKRRIVALEGEAYFEVVQDESHPFVVQTHLGEVMVLGTAFNVNAY----TDASVCY 283
Query: 392 THVM--EIMFSFPKESQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEE 449
T ++ ++ FS P ++ ++++ + + + + + Y+ + G
Sbjct: 284 TTLVHGKVQFSAP--------NVGTVTLQPGEQAVVSANGTEKRTVDLDEYIGWVNGVYN 335
Query: 450 DPFRNS-KILEE-YRFIDIPITYRS 472
R+ +I+E R+ DI I Y +
Sbjct: 336 FKNRSLGEIMETFERWYDIQIYYET 360
>gi|239834362|ref|ZP_04682690.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|239822425|gb|EEQ93994.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
Length = 341
Score = 44.4 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+ A + P R IYE A + R L + L E++ L+ AI +E++
Sbjct: 8 IRNAFAKADAHNPATRQRIYESAWGAHERAL-ATNAALSDAQKEQRRQNLKDAISGIEQE 66
Query: 68 NQKSLHTSKQ-DKESDIP--KSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQG 123
+ TS + + D P + V P L + S + K+ L +G
Sbjct: 67 FKTGGETSARHEPTLDAPLREDPVLGGRVEETSPALDTGDIRATSRQKKRSNADLGYEG 125
>gi|237716849|ref|ZP_04547330.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229442832|gb|EEO48623.1| conserved hypothetical protein [Bacteroides sp. D1]
Length = 399
Score = 44.1 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 118/357 (33%), Gaps = 59/357 (16%)
Query: 147 SVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFY 206
+ + Q E + ++ ++ +L+ G+ + F NY K
Sbjct: 23 NESEQQELEKRLAECPDLQKVYEQLQNGETLRVA-------FEEYKNYSSKKAYESFLQK 75
Query: 207 SALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK-GSITHFLRRESLDGGNVDKKNVFSGI 265
+E + K I +A V IG S S + ES + + G+
Sbjct: 76 IGQTEPEVIKKSRAFRIWWSVAAAVVLVIGLSFYMSNYGSIEEES-------RPLIQPGV 128
Query: 266 RPKITRRLLEDGSEVDVGPSTI--------------------PVADFANTSNIAFKNYIG 305
+ + L DGS +DV + ++ K I
Sbjct: 129 QQ--AQLTLPDGSIIDVHKKEVNVIVDGVQVKYKEGVLSYKPTATTQYTEKSVVEKPVIS 186
Query: 306 GD------ENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGL 359
+ +T VL N G+ + L G+ + + Q++S
Sbjct: 187 NELVIPRGGENTVVLADGTTVHLNAGSKLTYPVRFVGKRRIVALEGEAYFEVVQDESHPF 246
Query: 360 KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVM--EIMFSFPKESQDAVVDLRRISM 417
G++ ++ AF+ + D S+ T ++ ++ FS P ++ +++
Sbjct: 247 VVQTHLGEVMVLGTAFNVNAY----TDASVCYTTLVHGKVQFSAP--------NVGTVTL 294
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNS-KILEE-YRFIDIPITYRS 472
+ + + + + + Y+ + G R+ +I+E R+ DI I Y +
Sbjct: 295 QPGEQAVVSANGTEKRTVDLDEYIGWVNGVYNFKNRSLGEIMETFERWYDIQIYYET 351
>gi|146343771|ref|YP_001208819.1| hypothetical protein BRADO7018 [Bradyrhizobium sp. ORS278]
gi|146196577|emb|CAL80604.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 392
Score = 43.7 bits (101), Expect = 0.072, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
V+F LV+ R +D + + + RS +YE AR +L+ + P E +R LE AI
Sbjct: 21 VEFALVLARTIDAVSADPEQLRSAVYELAR----HKLQELATEDPSEK-QRLMKALEVAI 75
Query: 62 LQVEKQNQKSLHTSKQDKESDIPKSSVTSKE 92
VE HT P S+V + +
Sbjct: 76 EGVEA------HTQNNGPAKLPPPSNVRAVQ 100
>gi|295085946|emb|CBK67469.1| Fe2+-dicitrate sensor, membrane component [Bacteroides
xylanisolvens XB1A]
Length = 399
Score = 43.3 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 56/357 (15%), Positives = 118/357 (33%), Gaps = 59/357 (16%)
Query: 147 SVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFY 206
+ + Q E + ++ ++ +L+ G+ + F NY K
Sbjct: 23 NESEQQELEKRLAECPDLQKVYEQLQNGETLRVA-------FEEYKNYSSKKAYESFLQK 75
Query: 207 SALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK-GSITHFLRRESLDGGNVDKKNVFSGI 265
+E + K I +A V IG S S + ES + + G+
Sbjct: 76 IGQTEPEVIKKSRAFRIWWSVAAAVVLVIGFSFYMSNYGSIEEES-------RPLIQPGV 128
Query: 266 RPKITRRLLEDGSEVDVGPSTI--------------------PVADFANTSNIAFKNYIG 305
+ + L DGS +DV + V N+ K
Sbjct: 129 QQ--AQLTLPDGSIIDVRKKEVNVIVDGVQVKYKEGVLSYKPTVTTQHEEKNVEEKPVKS 186
Query: 306 GD------ENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGL 359
+ +T +L N G+ + L G+ + + Q++S
Sbjct: 187 NELIIPRGGENTVILADGTTVHLNAGSKLTYPVRFAGKRRIVALEGEAYFEVVQDESHPF 246
Query: 360 KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVM--EIMFSFPKESQDAVVDLRRISM 417
G++ ++ AF+ + D S+ T ++ ++ FS P ++ +++
Sbjct: 247 VVQTHLGEVMVLGTAFNVNAY----TDASVCYTTLVHGKVQFSAP--------NVGTVTL 294
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNS-KILEE-YRFIDIPITYRS 472
+ + + + + + Y+ + G R+ +I+E R+ DI I Y +
Sbjct: 295 QPGEQAVVSANGTEKRTVDLDEYIGWVNGVYNFKNRSLGEIMETFERWYDIQIYYET 351
>gi|198425789|ref|XP_002121007.1| PREDICTED: similar to RPGRIP1-like [Ciona intestinalis]
Length = 1308
Score = 42.5 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 70/172 (40%), Gaps = 11/172 (6%)
Query: 12 VDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEI-----LERQFNKLEQAILQVEK 66
V P TP++R+ R++ + L + LE Q L++ ++ +E+
Sbjct: 132 VSRKPNGTPDKRARSAASTRSTSPHQARYGHSLLEEARGVNQQLEHQILALQEQVVIMER 191
Query: 67 QNQK------SLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
+NQ SL+TS ++ + + ++++ E +K L ++ +
Sbjct: 192 ENQHLKQEITSLNTSHEEDILKLREMMNSTQKKTLGENVELIKVHRAMKDKSNDLTSLEA 251
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLR 172
+ + N + +++ L+E+ E +SS+S ++H S R
Sbjct: 252 RYHELQQNCHQMRQSYEKVLQEMERLKSQLLEEQNSSISLQNQLKHGSSHQR 303
>gi|154416448|ref|XP_001581246.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915472|gb|EAY20260.1| hypothetical protein TVAG_192360 [Trichomonas vaginalis G3]
Length = 830
Score = 42.5 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 12/224 (5%)
Query: 9 QRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQN 68
++A+++ E TP + +Y+ + R + + K K+ + + L + Q ++
Sbjct: 250 KKAIES-AEPTPRTETRVYKKVQRPAPREINTEKEPDQKDQINKNKELLREQQKQKLQEF 308
Query: 69 QKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSI--LRSNKHKKLANILSVQ-GKS 125
K + ++KES IP + + ++ + SSI L + SV+
Sbjct: 309 AKQKKHNMEEKESRIPTKNRSETPRKIIKQPSSTKSSIPVLHHKVETRPNRSSSVKSNHQ 368
Query: 126 RTNTNLSPKNFSCRLREI-LSFSVNTQHEYDSSVSPVAAIEHD-KSRLRRGKLAGIFSF- 182
P I + + +H + + + + D K L + K+
Sbjct: 369 NKRLGKLPTPPDSHRSTISETRTDEEKHRQSNVIKRTYSFDGDEKKFLNKIKIEIKSGHI 428
Query: 183 -----PTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFL 221
SI +V NK + + L + +
Sbjct: 429 EDLRDDIASIGTTVLQSCLNKNSEIQKIAFNILSDLLDAFATYF 472
>gi|218778853|ref|YP_002430171.1| RNA polymerase, sigma 28 subunit, FliA/WhiG [Desulfatibacillum
alkenivorans AK-01]
gi|218760237|gb|ACL02703.1| RNA polymerase, sigma 28 subunit, FliA/WhiG [Desulfatibacillum
alkenivorans AK-01]
Length = 252
Score = 42.5 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 29 HARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSV 88
R ++ L +M + ++ ++EQA+ +VEK+ + ++ ++ +
Sbjct: 79 RIRGAMLDELRAMD--WVPRSVRKKVQEIEQAVNRVEKRES---RPADAEEIANELGVDM 133
Query: 89 TSKENIFLEPRLRSISSILR------SNKHKKLANILSVQGKSRTNTNLSPKNFSCRLRE 142
+ +N+ + + S+ + K + ++ ++ N N ++
Sbjct: 134 DTYQNMLSKAGGIELVSLDEPLWSNDNTKDGRRTHVDLLE----DNANPDRDLMDSEFKK 189
Query: 143 ILSFSVNTQHEYDSSVSPV 161
IL+ S+++ + + +
Sbjct: 190 ILAQSISSLTPKEQQILSL 208
>gi|114706650|ref|ZP_01439551.1| hypothetical protein FP2506_12899 [Fulvimarina pelagi HTCC2506]
gi|114538042|gb|EAU41165.1| hypothetical protein FP2506_12899 [Fulvimarina pelagi HTCC2506]
Length = 476
Score = 42.1 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 8 IQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQ 67
I+RA++ +P R +Y A ++ R L + + + +L +AI VE
Sbjct: 9 IRRALEAGAAASPTFRQGVYWAAERAIERVLAT---DTDDKRARAKRKELSEAIQAVEAD 65
Query: 68 NQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRS 102
S S + D + + EN L S
Sbjct: 66 YAISGEDSAFVQTPDASRQPRETTENSTLSSVPAS 100
>gi|302670750|ref|YP_003830710.1| flagellar biosynthesis sigma factor FliA [Butyrivibrio
proteoclasticus B316]
gi|302395223|gb|ADL34128.1| flagellar biosynthesis sigma factor FliA [Butyrivibrio
proteoclasticus B316]
Length = 257
Score = 42.1 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 22/185 (11%), Positives = 69/185 (37%), Gaps = 15/185 (8%)
Query: 29 HARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSV 88
R ++ ++ M + ++ K+E AI ++E+ ++ + I +
Sbjct: 83 RIRGAILDQIRKMD--WIPRTIRQRQKKIEAAIREIERDGGHVATDAEIAAKMQISEDEY 140
Query: 89 TSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPK--NFSCRLREILSF 146
+ +N ++ ++ N+ + +R++ + P+ L+++L+
Sbjct: 141 ANWQN------QMKVTGVVSLNEFMDQGADIPEDSNNRSSGFVKPEEAIEKEELKKMLAQ 194
Query: 147 SVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFY 206
S+ + + + V + +++ L+ ++ + + +H K R L Y
Sbjct: 195 SLESLTDKEKKVILL--YYYEELTLKE--ISQVLEVSESRV-SQLHTKALQKMREKLGDY 249
Query: 207 SALSE 211
+
Sbjct: 250 LGILT 254
>gi|193673974|ref|XP_001950375.1| PREDICTED: tektin-2-like isoform 1 [Acyrthosiphon pisum]
gi|328715846|ref|XP_003245748.1| PREDICTED: tektin-2-like isoform 2 [Acyrthosiphon pisum]
Length = 404
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 22 RRSHIY--EHARNSVARRLESMKPRLPKEILERQFNKLEQAILQ-------VEKQNQKSL 72
R IY E A+ + + ++M L KE L ++ NKLE A+ + VE + ++ L
Sbjct: 266 LRKRIYHTERAKYELEWQKKNM--ILDKETLLKEINKLEDALDRKLNSKKLVETRYEERL 323
Query: 73 HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANI---LSVQGKSRTNT 129
+ + + D P + KEN L+ + ++ L K + + +
Sbjct: 324 YRVEVELCLDKPTLGL-QKENALLDNSTKMLNDKLNQTKAMHTVLTGHLNLIDEQLKNKA 382
Query: 130 NLSPKNFSC 138
+ + C
Sbjct: 383 HALNVDQKC 391
>gi|270013709|gb|EFA10157.1| hypothetical protein TcasGA2_TC012345 [Tribolium castaneum]
Length = 2643
Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 84/213 (39%), Gaps = 25/213 (11%)
Query: 21 ERRSHIYEHARNSVARRLE----SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSK 76
ER+ + ++A + VA+ E + P + +E +E + + E + ++ T
Sbjct: 524 ERKERVRQNAEDMVAKMHEESSDAFPPPVSEETVETPTDANQSTTSVEESEKNEA--TED 581
Query: 77 QDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNF 136
+DK+S+ ++S + +N+ L L K+ + +L+ + + +
Sbjct: 582 EDKDSNKSRTSTPAPKNVSLVDDL-----------RKRTSAVLNRDDDKNGDASRMTRLK 630
Query: 137 SCRLRE--------ILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIF 188
S ++ + + + +++ ++V + + ++ R ++ L+ FS S F
Sbjct: 631 SSQIANGTYLFKLGMENTFKSYVNQFTTNVIALNKPQRNEERDKKRHLSHKFSLTQASEF 690
Query: 189 WSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFL 221
V N+T L + + F+
Sbjct: 691 KWVGALNGNRTILLNTLRQTFLQLEQSIQASFM 723
>gi|307099824|gb|ADN32762.1| von Willebrand factor-binding protein [Staphylococcus aureus]
gi|307752715|gb|ADN93317.1| von Willebrand factor-binding protein [Staphylococcus aureus]
Length = 502
Score = 41.8 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 30 ARNSVARRLE---SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKS 86
AR ++ +L+ + ++ + + E I +E + +++ +IP
Sbjct: 192 ARENLYNKLDMIVGLSKNEREDKIPKNKRMFEDRIKDLESIIDEFFVEINENRPLNIPAL 251
Query: 87 SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPK---NFSCRLREI 143
+++ENI + +L++ + ++N K+ L+ Q ++ + N+ + +EI
Sbjct: 252 VESNEENIVMAKKLKADTEEAKANTSKRSKRSLNTQNHKSKINEVTEEQKANYEKKFKEI 311
Query: 144 LSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGK 175
+ Q +++ PV ++E+D+ K
Sbjct: 312 KERFLAKQKNKNNT--PVVSLEYDEDDNENDK 341
>gi|124485297|ref|YP_001029913.1| thymidylate synthase [Methanocorpusculum labreanum Z]
gi|124362838|gb|ABN06646.1| hypothetical protein Mlab_0472 [Methanocorpusculum labreanum Z]
Length = 197
Score = 41.8 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 436 SKNSYLISLKGSEEDPFR--NSKILEEYRFIDIPITYRSGQKILFTIDKGKKGADI 489
+++ Y+ + E+ R N ++ + +++ +++ G++ + T++KG G +
Sbjct: 95 TRDFYVCAAS-IPEEFCREWNMELTLDQPVLNLISSFKGGKRAVMTMEKGIAGENA 149
>gi|153006218|ref|YP_001380543.1| dTMP kinase [Anaeromyxobacter sp. Fw109-5]
gi|152029791|gb|ABS27559.1| dTMP kinase [Anaeromyxobacter sp. Fw109-5]
Length = 564
Score = 41.8 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 41/103 (39%)
Query: 3 DFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAIL 62
D + ++ D E E R +++ A V R L + + ER ++A+
Sbjct: 420 DRLAALRSTQDVDGEVARELRERLFDRAAKRVLRSLSGLDAPYAWGLRERALPSTKEALD 479
Query: 63 QVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISS 105
V+ + ++ P ++V+S ++ R R++ S
Sbjct: 480 SVDGMDHPRAWALREVGVQLWPATAVSSLRHLAPTERGRALVS 522
>gi|302037732|ref|YP_003798054.1| putative phosphate ABC transporter permease protein [Candidatus
Nitrospira defluvii]
gi|300605796|emb|CBK42129.1| putative Phosphate ABC transporter, permease protein with WD40-like
region (modular protein) [Candidatus Nitrospira
defluvii]
Length = 742
Score = 41.4 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 261 VFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFK------NYIGGDENSTFVL 314
+F+ K+T+RL VD GP+ + V + + + + G
Sbjct: 52 LFTAPSAKLTQRLSVPALLVDEGPAQVAVDEHREIAQVFTSGAIQFFDLASGQPIPLETP 111
Query: 315 GKKEIEEGNPLIGEG--RVFINKGRGQSSILSGKILWSLQ-QEKSQGLKGLVIKGDIPMI 371
+ + + + G + G +L K+ + + ++ + K I+ P+
Sbjct: 112 AQVKARQITAMASGGGNAPRLAVGTADGEVLFLKVGTTTEFTDQGERRKRPHIRAGQPIP 171
Query: 372 -DNAFSASMTLKCNADISLSI 391
+ + + N SL
Sbjct: 172 LTKSPIVRLAYRANDQGSLLA 192
>gi|298484271|ref|ZP_07002435.1| anti-sigma factor [Bacteroides sp. D22]
gi|298269596|gb|EFI11193.1| anti-sigma factor [Bacteroides sp. D22]
Length = 399
Score = 41.4 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 118/357 (33%), Gaps = 59/357 (16%)
Query: 147 SVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFY 206
+ + Q E + ++ ++ +L+ G+ + F NY K
Sbjct: 23 NESEQQELEKRLAECPDLQKVYEQLQNGETLRVA-------FEEYKNYSSKKAYESFLQK 75
Query: 207 SALSEHHLFKYFVFLIILLGMAIGVSYSIGKSK-GSITHFLRRESLDGGNVDKKNVFSGI 265
+E + K I +A V IG S S + ES + + G+
Sbjct: 76 IGQTEPEVIKKPRAFRIWWSVAAAVVLVIGLSFYMSNYGSIEEES-------RPLIQPGV 128
Query: 266 RPKITRRLLEDGSEVDVGPSTI--------------------PVADFANTSNIAFKNYIG 305
+ + L DGS +DV + V N+ K
Sbjct: 129 QQ--AQLTLPDGSIIDVHKKEVNVIVDGVQVKYEEGVLSYEPTVTTQHEEKNVEEKPVKS 186
Query: 306 GD------ENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGL 359
+ +T +L N G+ + L G+ + + Q++S
Sbjct: 187 NELIIPRGGENTVILADGTTVHLNAGSKLTYPVRFAGKRRIVALEGEAYFEVVQDESHPF 246
Query: 360 KGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVM--EIMFSFPKESQDAVVDLRRISM 417
G++ ++ AF+ + D S+ T ++ ++ FS P ++ +++
Sbjct: 247 VVQTHLGEVMVLGTAFNVNAY----TDASVCYTTLVHGKVQFSAP--------NVGTVTL 294
Query: 418 RKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNS-KILEE-YRFIDIPITYRS 472
+ + + + + + Y+ + G R+ +I+E R+ DI + Y +
Sbjct: 295 QPGEQAVVSANGTEKRTVDLDEYIGWVNGVYNFKNRSLGEIMETFERWYDIQVYYET 351
>gi|290970326|ref|XP_002668099.1| predicted protein [Naegleria gruberi]
gi|284081247|gb|EFC35355.1| predicted protein [Naegleria gruberi]
Length = 362
Score = 41.4 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 15/222 (6%)
Query: 21 ERRSHIYEHAR----NSVARRLES-----MKPRLPKEILERQFNKLEQAILQVEKQNQKS 71
E IY+ N + +E+ + P++ ++ E + L +AI +VEK+ ++
Sbjct: 142 ESYKKIYDSVMEIDGNVLVEDVEALVNVHVDPQVAQKGWE-EKRTLLKAIKEVEKKY-ET 199
Query: 72 LHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNL 131
L + + D + TS + + +IS ++ L ++ G N
Sbjct: 200 LEKDIKTNKKDFVQKRETSLVSWYNVAFGSAISLLIVMTTLSDLIPFDTLSGLGMDKQNT 259
Query: 132 SPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSV 191
+ + R +++ + + L +I ++
Sbjct: 260 TAIYPTYYSRN----DTTVYTDHNQNFRDSKILAAIVDVLNSSFFKTGAYAAFLTIMDAM 315
Query: 192 HNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSY 233
N NK+ + S + FK F I+L +AIG+S+
Sbjct: 316 LNSINNKSILINSDTTTNVLEVTFKLITFFSIILNIAIGLSF 357
>gi|27380992|ref|NP_772521.1| hypothetical protein blr5881 [Bradyrhizobium japonicum USDA 110]
gi|27354158|dbj|BAC51146.1| blr5881 [Bradyrhizobium japonicum USDA 110]
Length = 381
Score = 41.0 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
V F LVI R ++ + ++ RR +Y+ AR + + + +++ LE AI
Sbjct: 21 VQFALVISRMLETVKDDPEFRRQLVYDLARYKLQEQFTYAD----AKNIDQMKRALEVAI 76
Query: 62 LQVEKQNQKSLHTSKQDKESDIPKSSVTSKEN-IFLEPRLRSISSILRS--NKHKKLAN 117
+VEK +++ + +P+ +TS + P L + + +LRS ++ A
Sbjct: 77 EEVEKFSREEAPLER------LPQHQLTSAKAGETGGPLLSADAPVLRSAIETSRRPAI 129
>gi|23008471|ref|ZP_00049901.1| hypothetical protein Magn03003554 [Magnetospirillum
magnetotacticum MS-1]
Length = 94
Score = 41.0 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF +I RAV P + + R +Y R +V R + + Q + +E+
Sbjct: 1 MADFTDLIARAVT--PAMSRDEREQVYTVVRQAVQRLQDRENLTPNDPRILLQRHLIEET 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDI 83
I VE + L K ++
Sbjct: 59 IRDVEFDIVRFLTLRKIEQARAA 81
>gi|268575506|ref|XP_002642732.1| C. briggsae CBR-KIN-18 protein [Caenorhabditis briggsae]
Length = 787
Score = 41.0 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 26 IYEHARNS-VARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIP 84
+Y+ + + + +++ + L +E + + LEQ IL+ E++ + K+++ D
Sbjct: 659 VYQKKQKATLEEQIQKERTTL-EERINARRALLEQKILE-EREQMAEMRRLKKEQIRDRH 716
Query: 85 KSSVTSKENIFLEPRLRSISSILRSNKHK-KLANILSVQGKSRTNTNLSPKNFSCRL 140
EN F+ S SS +N ++A + SV+ + + P +L
Sbjct: 717 SQERHRLENQFVRTGSTSRSSGGATNSSSIQMAILFSVKNHENS-LEIDPDIAHFQL 772
>gi|182437527|ref|YP_001825246.1| hypothetical protein SGR_3734 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466043|dbj|BAG20563.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 247
Score = 41.0 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS----LHTS 75
P +R E AR P L ++ +ERQ ++ I +V + L
Sbjct: 105 PPKRVRPSEEARRLYRDLARKAHPDLAQDEVERQRR--DEFIARVNAAYGRGDVELLKEL 162
Query: 76 KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS---VQGKSRTNTNLS 132
+ E+ + E+ L RL +S + K+L +L+ G + ++
Sbjct: 163 VAEWEAGPVQPPAPLSESEELYARLEWLS------RRKELLTVLAKELEDGAIGSMLRMA 216
Query: 133 PKNFSCRLREI 143
P + L +I
Sbjct: 217 PDDPDQLLEDI 227
>gi|47459245|ref|YP_016107.1| segregation of chromosomes protein [Mycoplasma mobile 163K]
gi|47458574|gb|AAT27896.1| segregation of chromosomes protein [Mycoplasma mobile 163K]
Length = 974
Score = 41.0 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 73/201 (36%), Gaps = 27/201 (13%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQV------ 64
+ + + +PE R I+E A + +L KE R+ K ++A+ +V
Sbjct: 146 TISEIAQASPEERRKIFEEAAGTSKYKLR-------KEEALRKLEKTKEALDKVKTVVLE 198
Query: 65 --------EKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSIL--RSNKHKK 114
EKQ + + ++ KE + ++ ++ + +L SIS+ L S +
Sbjct: 199 LNKQLIPLEKQAKNAKTYLEKSKELKSVEVALIVEDLVLFTNKLDSISTSLNQTSEARED 258
Query: 115 LANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRG 174
L + L N NF L +I + + + + + + + R
Sbjct: 259 LKSELEKIENELKVKNSYRSNFETELSKIDQKI----NSLNEKLQELEISQQKEEQRREL 314
Query: 175 KLAGIFSFPTGSIFWSVHNYF 195
++G + + ++
Sbjct: 315 LISGQINASSSEKNEAMKQQL 335
>gi|167754401|ref|ZP_02426528.1| hypothetical protein ALIPUT_02695 [Alistipes putredinis DSM 17216]
gi|167659026|gb|EDS03156.1| hypothetical protein ALIPUT_02695 [Alistipes putredinis DSM 17216]
Length = 661
Score = 41.0 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 2 VDFILVIQ----RAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKE----ILERQ 53
DF ++ + ++ + ++ + + ++ R++ + +P+ LE +
Sbjct: 182 ADFAALLASLTGKTMEEYKKEIAAKKRRL-KTEIEAIPERIDERRRDVPEAEDWAALEEE 240
Query: 54 FNKLEQAILQVEKQ-NQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLR---SISSILRS 109
+ ++A+ +VE+Q N S + ++E ++ +N L L+ + ++ RS
Sbjct: 241 LRQKQEALAKVEEQINDASKAYAAANEERLATVRKISDLKNERLALELKIKDEVQALYRS 300
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCR 139
+K K+ A ++ R + R
Sbjct: 301 DKAKQRAAAEDLERAKRDKAAAERDLANAR 330
>gi|13592049|ref|NP_112360.1| rho-associated protein kinase 1 [Rattus norvegicus]
gi|47605939|sp|Q63644|ROCK1_RAT RecName: Full=Rho-associated protein kinase 1; AltName: Full=Liver
regeneration-related protein LRRG199; AltName:
Full=Rho-associated, coiled-coil-containing protein
kinase 1; AltName: Full=p150 RhoA-binding kinase ROK
beta; AltName: Full=p160 ROCK-1; Short=p160ROCK
gi|1438567|gb|AAB37571.1| Rho-associated kinase beta [Rattus norvegicus]
Length = 1369
Score = 40.6 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 25/220 (11%)
Query: 8 IQRAVDNLPE---NTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQV 64
+Q+ + L E N + + + + R S +L+ + L +E Q LE A+ Q+
Sbjct: 428 LQKTIYKLEEQLHNEMQLKDEMEQKCRTSNI-KLDKIMKELDEE--GNQRRNLESAVSQI 484
Query: 65 EKQN-------QKSLHTSKQDKESDI-PKSSVTSKENIFLEPRLRSISSILRSNKHKKLA 116
EK+ + +Q+ E ++ V++ ++ + R S SS L + K +L
Sbjct: 485 EKEKMLLQHRINEYQRKVEQENEKRRNVENEVSTLKDQLEDLRKASQSSQLANEKLTQLQ 544
Query: 117 NILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKL 176
L + + + RLR+ + E SVS + ++ + R
Sbjct: 545 KQLEEANDLLRTESDT----AVRLRK-------SHTEMSKSVSQLESLNRELQERNRMLE 593
Query: 177 AGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFK 216
+ RG S + +
Sbjct: 594 NSKSQADKDYYQLQAVLEAERRDRGHDSEMIGDLQARITS 633
>gi|307099828|gb|ADN32764.1| von Willebrand factor-binding protein [Staphylococcus aureus]
Length = 502
Score = 40.6 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 30 ARNSVARRLE---SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKS 86
AR ++ +L+ + ++ + + E I +E + +++ +IP
Sbjct: 192 ARENLYNKLDMIVGLSKNEREDKIPKNKRMFEDRIKDLESIIDEFFVEINENRPLNIPAL 251
Query: 87 SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPK---NFSCRLREI 143
+++ENI + +L++ + ++N K+ L+ Q ++ + N+ + +EI
Sbjct: 252 VESNEENIVMAKKLKADTEEAKANTSKRSKRSLNTQNHKSKINEVTEEQKANYEKKFKEI 311
Query: 144 LSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGK 175
+ Q +++ PV ++E+D+ K
Sbjct: 312 KERFLAKQKYKNNT--PVVSLEYDEDDNENDK 341
>gi|224059434|ref|XP_002299845.1| predicted protein [Populus trichocarpa]
gi|222847103|gb|EEE84650.1| predicted protein [Populus trichocarpa]
Length = 446
Score = 40.6 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 15/206 (7%)
Query: 8 IQRAVDNLPENT-PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEK 66
+Q+ +++L +NT P R + E A +E + +E L Q L++ + + E+
Sbjct: 98 LQKRLNDLEQNTVPSLRKALREVA-------MEKDAAVVSREDLSAQLRTLKKRLKEAEE 150
Query: 67 QNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSI-LRSNKHKKLANILSVQGKS 125
+ ++ ++++ + ++ + S + + ISS+ + ++ ++L L+
Sbjct: 151 EQYRA------EEDAAVLRAELNSMQRQAMSNHPGDISSMSVSHDQVQRLEKELAGLKSE 204
Query: 126 RTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTG 185
+L + RL E S + E V +AA+ S K +F
Sbjct: 205 FQQVSLLRQQEQQRLAEEQSRTSALTSEKQQLVEKLAALSRTVSGALLQKFPKVFVEDKE 264
Query: 186 SIFWSVHNYFFNKTRGLLSFYSALSE 211
+ +H+ R S L E
Sbjct: 265 KLEKQLHDMALAVERLESSRQKLLME 290
>gi|315042283|ref|XP_003170518.1| hypothetical protein MGYG_07763 [Arthroderma gypseum CBS 118893]
gi|311345552|gb|EFR04755.1| hypothetical protein MGYG_07763 [Arthroderma gypseum CBS 118893]
Length = 938
Score = 40.6 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 20/155 (12%)
Query: 9 QRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQV--EK 66
RA LP N+ R +LE P +E + + LE+A + V E
Sbjct: 462 SRANAALPTNSAFSRKR-----------KLEE-DPEFSEEAVAAKRRALEEATIAVTDEA 509
Query: 67 QNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSR 126
+ + + P SV S ++ + ++ A + +
Sbjct: 510 EESNVRTAMEPPQGWVFPGPSVPSDSEGQGSTIPAPVAPAPKDKAARQPATVGT------ 563
Query: 127 TNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPV 161
++T+ + + EI + + +
Sbjct: 564 SSTSKRVRKPRVQADEIDNIDFCRACGGNGQLLCC 598
>gi|240047686|ref|YP_002961074.1| putative ABC transporter ATP-binding protein P [Mycoplasma
conjunctivae HRC/581]
gi|239985258|emb|CAT05271.1| Putative ABC transporter ATP-binding protein P [Mycoplasma
conjunctivae]
Length = 980
Score = 40.6 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 11/158 (6%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
+ + E TPE+R + E + +L+ + E + K+E + ++E+Q++
Sbjct: 145 TISEIAEATPEQRKAVIEEVAGTAKYKLDKQEALTKLEQTKTAIEKIEIKVRELERQSKN 204
Query: 71 SLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTN 130
++ K S++ S E + L ++ L S K + ++LS S
Sbjct: 205 LEKQAENAKIYLEKSSALESVEVALIVNDLNDYNAKLTSLK--QEISVLSQDDNS----- 257
Query: 131 LSPKNFSCRL-REILSFSVNTQHEYDSSVSPVAAIEHD 167
N ++++ + N + + + +S + + ++
Sbjct: 258 ---NNLEYEKNQQVIVENTNIKQDLEKKISNIKSEIYE 292
>gi|239942634|ref|ZP_04694571.1| hypothetical protein SrosN15_16698 [Streptomyces roseosporus NRRL
15998]
gi|239989093|ref|ZP_04709757.1| hypothetical protein SrosN1_17455 [Streptomyces roseosporus NRRL
11379]
Length = 307
Score = 40.6 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS----LHTS 75
P +R E AR P L ++ +ERQ ++ I +V + L
Sbjct: 164 PPKRVRPSEEARRLYRELARKAHPDLAQDEVERQRR--DEFIARVNAAYGRGDVELLKEL 221
Query: 76 KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS---VQGKSRTNTNLS 132
+ E+ + E+ L RL +S + K+L +L+ G + ++
Sbjct: 222 VAEWEAGPVQPPAPLSESEELYARLEWLS------RRKELLTVLAKELEDGAIGSMLRMA 275
Query: 133 PKNFSCRLREILSFSVNTQHEYDSSVSPVA 162
P + L +I + ++ ++ +A
Sbjct: 276 PDDPDQLLEDIAEQLLGEVSRREAELAEMA 305
>gi|188583755|ref|YP_001927200.1| hypothetical protein Mpop_4567 [Methylobacterium populi BJ001]
gi|179347253|gb|ACB82665.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 94
Score = 40.6 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF +I RAV P + E R +Y R +V R + + Q + +E+
Sbjct: 1 MADFTDLIARAVS--PSMSREEREQVYTVVRQAVQRLQDRENLAGDDPRILLQRHLIEET 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDI 83
I +E + L K D+
Sbjct: 59 IRDIEFDIVRFLTLRKIDQARAA 81
>gi|291446094|ref|ZP_06585484.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349041|gb|EFE75945.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 40.6 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS----LHTS 75
P +R E AR P L ++ +ERQ ++ I +V + L
Sbjct: 157 PPKRVRPSEEARRLYRELARKAHPDLAQDEVERQRR--DEFIARVNAAYGRGDVELLKEL 214
Query: 76 KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS---VQGKSRTNTNLS 132
+ E+ + E+ L RL +S + K+L +L+ G + ++
Sbjct: 215 VAEWEAGPVQPPAPLSESEELYARLEWLS------RRKELLTVLAKELEDGAIGSMLRMA 268
Query: 133 PKNFSCRLREILSFSVNTQHEYDSSVSPVA 162
P + L +I + ++ ++ +A
Sbjct: 269 PDDPDQLLEDIAEQLLGEVSRREAELAEMA 298
>gi|149031715|gb|EDL86665.1| Rho-associated coiled-coil forming kinase 1, isoform CRA_b [Rattus
norvegicus]
Length = 1284
Score = 40.6 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 25/220 (11%)
Query: 8 IQRAVDNLPE---NTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQV 64
+Q+ + L E N + + + + R S +L+ + L +E Q LE A+ Q+
Sbjct: 358 LQKTIYKLEEQLHNEMQLKDEMEQKCRTSNI-KLDKIMKELDEE--GNQRRNLESAVSQI 414
Query: 65 EKQN-------QKSLHTSKQDKESDI-PKSSVTSKENIFLEPRLRSISSILRSNKHKKLA 116
EK+ + +Q+ E ++ V++ ++ + R S SS L + K +L
Sbjct: 415 EKEKMLLQHRINEYQRKVEQENEKRRNVENEVSTLKDQLEDLRKASQSSQLANEKLTQLQ 474
Query: 117 NILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKL 176
L + + + RLR+ + E SVS + ++ + R
Sbjct: 475 KQLEEANDLLRTESDT----AVRLRK-------SHTEMSKSVSQLESLNRELQERNRMLE 523
Query: 177 AGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFK 216
+ RG S + +
Sbjct: 524 NSKSQADKDYYQLQAVLEAERRDRGHDSEMIGDLQARITS 563
>gi|320034496|gb|EFW16440.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 372
Score = 40.2 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 15/207 (7%)
Query: 38 LESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLE 97
L + PRL EI + +LE L Q + +D+++ P+SS
Sbjct: 81 LSAPSPRLSDEIQPSETPQLEDGQLPANGQVILENPSMSRDQQTSEPQSSFDP--ASIQG 138
Query: 98 PRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNT------- 150
RL S S +N + +G+ + + S N +E N
Sbjct: 139 SRLMSGSRAPVANSSYDTSASTPEEGQISDHISASQNNSMSSNQEASQKFSNAASIEPPA 198
Query: 151 -----QHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSF 205
+ D S S + + RR LA I F + S R L
Sbjct: 199 QAHLPEQPGDESYSSLETLPELADLRRRQSLANIIDFER-RLSASTEGQEKKARRLSLER 257
Query: 206 YSALSEHHLFKYFVFLIILLGMAIGVS 232
++A + F F+ +++ S
Sbjct: 258 HNAAKAYAKFASIYFISLIITWVPATS 284
>gi|29831024|ref|NP_825658.1| hypothetical protein SAV_4481 [Streptomyces avermitilis MA-4680]
gi|29608138|dbj|BAC72193.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 482
Score = 39.8 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 276 DGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINK 335
+G++ D G + + A N G ++ GK E EG +
Sbjct: 326 EGTQDDTGKAPDEGTEQAPDDNAGKAPEEGTEQAPDDNTGKAPEEGTEQAPDEGTEQAPE 385
Query: 336 GRGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNA 374
+ + +G +Q QG + +G D
Sbjct: 386 EGAEQAPDTGT-----EQAPDQGTEQAPEEGTEQAPDTG 419
>gi|145494680|ref|XP_001433334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400451|emb|CAK65937.1| unnamed protein product [Paramecium tetraurelia]
Length = 3381
Score = 39.8 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 21/222 (9%)
Query: 14 NLPENTP-ERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSL 72
L +TP + R +Y A ++ ++ L +E + + ++AI Q E+Q +
Sbjct: 2504 ALINSTPYDDREEMY---LQISAEQIRNLPQDLRQEATQIRDRADQRAIEQTERQLYYQV 2560
Query: 73 HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLS 132
+Q + + KEN K L N+L Q
Sbjct: 2561 DPQQQHQRIPNIQPQQQRKEN----------------QKSLNLKNLLQTQRHLVQKLGNV 2604
Query: 133 PKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVH 192
F+ L +L ++ + ++ + L I + + S
Sbjct: 2605 DDEFAESLLRLLYVESHSFVNFPINLFIALTNNPNVEYKLIDALFFILKNHSSRVIQSEF 2664
Query: 193 -NYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSY 233
+ GL+ S + E K + L G +I +
Sbjct: 2665 PPQILIRRNGLIRDQSKIYEIVSLKILYLISKLQGPSIKYFF 2706
>gi|330836249|ref|YP_004410890.1| hypothetical protein Spico_0278 [Spirochaeta coccoides DSM 17374]
gi|329748152|gb|AEC01508.1| hypothetical protein Spico_0278 [Spirochaeta coccoides DSM 17374]
Length = 219
Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 13 DNLPENTPERRSHIYEHARNSV-------ARRLESMKPRLPKEILERQFNKLEQAILQVE 65
D L TP + + ++ + L+ +K +P++I + KLE AI +++
Sbjct: 61 DKLKNLTPVEKEQLINSLGKALTNENTQQEKLLDELKKPVPEDIHDAAKQKLEAAIAELD 120
Query: 66 KQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS-----NKHKKLANILS 120
+ +++ + + +IP+ ++ ++ L +++ L + A +++
Sbjct: 121 RITDENVRDAIKSLLPEIPEEGTLTQSDVLNIQLLTAMAESLGTLMGDGGASLDDAQVVA 180
Query: 121 VQGKSRTNTNLSPKNFSCRLREIL 144
+ G+ + K ++L
Sbjct: 181 MVGEMSDIITIIKKTADAAQVDVL 204
>gi|326778182|ref|ZP_08237447.1| hypothetical protein SACT1_4031 [Streptomyces cf. griseus
XylebKG-1]
gi|326658515|gb|EGE43361.1| hypothetical protein SACT1_4031 [Streptomyces cf. griseus
XylebKG-1]
Length = 316
Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS----LHTS 75
P +R E AR P L ++ +ERQ ++ I +V + L
Sbjct: 174 PPKRVRPSEEARRLYRDLARKAHPDLAQDEVERQRR--DEFIARVNAAYGRGDVELLKEL 231
Query: 76 KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS---VQGKSRTNTNLS 132
+ E+ + E+ L RL +S + K+L +L+ G + ++
Sbjct: 232 VAEWEAGPVQPPAPLSESEELYARLEWLS------RRKELLTVLAKELEDGAIGSMLRMA 285
Query: 133 PKNFSCRLREI 143
P + L +I
Sbjct: 286 PDDPDQLLEDI 296
>gi|149031714|gb|EDL86664.1| Rho-associated coiled-coil forming kinase 1, isoform CRA_a [Rattus
norvegicus]
Length = 1089
Score = 39.8 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 25/220 (11%)
Query: 8 IQRAVDNLPE---NTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQV 64
+Q+ + L E N + + + + R S +L+ + L +E Q LE A+ Q+
Sbjct: 358 LQKTIYKLEEQLHNEMQLKDEMEQKCRTSNI-KLDKIMKELDEE--GNQRRNLESAVSQI 414
Query: 65 EKQN-------QKSLHTSKQDKESDI-PKSSVTSKENIFLEPRLRSISSILRSNKHKKLA 116
EK+ + +Q+ E ++ V++ ++ + R S SS L + K +L
Sbjct: 415 EKEKMLLQHRINEYQRKVEQENEKRRNVENEVSTLKDQLEDLRKASQSSQLANEKLTQLQ 474
Query: 117 NILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKL 176
L + + + RLR+ + E SVS + ++ + R
Sbjct: 475 KQLEEANDLLRTESDT----AVRLRK-------SHTEMSKSVSQLESLNRELQERNRMLE 523
Query: 177 AGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFK 216
+ RG S + +
Sbjct: 524 NSKSQADKDYYQLQAVLEAERRDRGHDSEMIGDLQARITS 563
>gi|308179063|ref|YP_003918469.1| glycerate kinase [Arthrobacter arilaitensis Re117]
gi|307746526|emb|CBT77498.1| glycerate kinase [Arthrobacter arilaitensis Re117]
Length = 392
Score = 39.8 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 274 LEDGSEVDVGPS--TIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRV 331
L D E D G P A I+ +Y D + L K + + L G V
Sbjct: 247 LADVLEADTGRKLREQPGMGAAGGLAISLGSYYQVDLVPGWDLVAKVLGAHDILQGADLV 306
Query: 332 FINKGRGQSSILSGKILWSLQQEKSQGLKGLVIKGDIPMIDNAFS 376
+GR S L GK++ + Q + + +V+ G + + D
Sbjct: 307 LTGEGRLDSQSLDGKVVSGVLQAAGENAEVIVVAGSVDLPDEQLE 351
>gi|145346002|ref|XP_001417486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577713|gb|ABO95779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 506
Score = 39.4 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 36/321 (11%)
Query: 29 HARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSV 88
AR ++ +L + +E E + E+A V +Q +K + E V
Sbjct: 60 RARRALEEKLSEYERGAGEERDEDATRRAEEAEETVREQEKKLSQAADIIGELRTTLLQV 119
Query: 89 TSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSV 148
EN P + +S + + + L RT + + +
Sbjct: 120 METENRGGAPESVTTNSQVDGEERRDGGTPL-----ERTTAAVKVWEGKVEKLVLETVKS 174
Query: 149 NTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSA 208
+ DS E ++ + + +I + + ++ R
Sbjct: 175 ALERAMDSPALQTNKREGEQVVSS---VTDAINHELSAIVENAMSGIVDEMRFQFGQEDE 231
Query: 209 LSEHHLFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLRRESL--DGGNVDKKNVFSGIR 266
E + + + + + +RR L NV + S
Sbjct: 232 DEEE-----------MGSVGGRKRFIVWLA----DENMRRAQLEEQLTNVQDELARSEAS 276
Query: 267 PKI-TRRLLE-----DGS----EVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGK 316
+I T+R L+ DGS E D+G + D + + + GD S
Sbjct: 277 RQIATQRWLQAMNQIDGSAFDDESDLG-EILSRVDDMSDDGTSVYSLEPGDLGSPRRRRP 335
Query: 317 KEIEEGNPLIGEGRVFINKGR 337
++GE + + R
Sbjct: 336 AANRRAMSVVGEAPMRSDARR 356
>gi|125598843|gb|EAZ38419.1| hypothetical protein OsJ_22797 [Oryza sativa Japonica Group]
Length = 787
Score = 39.4 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 9/160 (5%)
Query: 28 EHARNSVARRLESM--KPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPK 85
E + + +L+S + + E L+RQ+ LE+ + +VE + +L + +KE+ I
Sbjct: 118 EKHHSEIVAQLKSAIEESKAINEELQRQYASLEENLKRVEAEKLDALRSYGDEKEARI-- 175
Query: 86 SSVTSKENIFLEPRLRSISSILR-SNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREIL 144
+V + N LE R R +++ K L + + T+ N +
Sbjct: 176 -AVEASRNEHLEDLRRIKLEEKRLNDQIKMLQDTNKRLQEYNTSLQQYNSNLQADATKNG 234
Query: 145 SFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPT 184
Q E ++ V + + K K+ + +
Sbjct: 235 ETIAKLQKEKNTMVETMNGL---KDHANSVKMQLDLAKSS 271
>gi|282851548|ref|ZP_06260913.1| ParB-like protein [Lactobacillus gasseri 224-1]
gi|282557516|gb|EFB63113.1| ParB-like protein [Lactobacillus gasseri 224-1]
Length = 325
Score = 39.4 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 438 NSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTIDK-----GKKGADIFKS 492
N +++ + N + + ++D+ I G+K T K G G +F
Sbjct: 136 NDFMVPPFSVLDTRQGNWQ-DRKREWLDLGIKSELGRKGDLTFAKSINIEGSSGTSVFDP 194
Query: 493 AIMQ 496
+ +
Sbjct: 195 VLTE 198
>gi|296111367|ref|YP_003621749.1| lactococcin A ABC transporter permease protein [Leuconostoc kimchii
IMSNU 11154]
gi|295832899|gb|ADG40780.1| lactococcin A ABC transporter permease protein [Leuconostoc kimchii
IMSNU 11154]
Length = 449
Score = 39.4 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 19/215 (8%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEI-------LERQFNKLEQAILQ 63
A+ N +PE Y + + ++ I L+ Q ++LE AI
Sbjct: 194 AIQNNTNLSPENN---YYRMFSEYRNQTATLNTEESANIKRNTINTLKEQIDQLEDAIAN 250
Query: 64 VEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQG 123
+ Q S+ +I ++ ++ L + +S++ + + K++
Sbjct: 251 YKTQYT--TLPSENALSPNILPDKLSDLKSQQLSTVAKDLSAV--TQEIKQIKIQHQATQ 306
Query: 124 KSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLR---RGKLAGIF 180
S N +SP+ + +L ++ + ++++ + +K +L+ + I
Sbjct: 307 DSYNNAIVSPETGTVKL--LVDKTKTRYMPQGTNIAQIYPNLAEKPKLKVTFYINTSEIT 364
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLF 215
+ G + + + N L+ S ++ H +
Sbjct: 365 NISKGQLVRYMLSQNNNTKSTLIGHISQIAAHPVT 399
>gi|311250812|ref|XP_003124307.1| PREDICTED: MICAL-like protein 2-like [Sus scrofa]
Length = 740
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 14/130 (10%)
Query: 262 FSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEE 321
G K + E + D GP P A N+ + + +
Sbjct: 479 LPGAPRK-AQEAQEAHGQRDAGPKARPPAWEPRVGNVTARGFAPATADPPATTASSHAPM 537
Query: 322 GNPLIGEGRVFINKGRGQSSILSGKIL-WSLQQEKSQG--------LKGLVIKGDIP--- 369
G+P + G+ + + + WSL S+ + +G +
Sbjct: 538 GSPAGPRFSAGLAPGKASTHVTNSSPTGWSLPPGSSRPATTPSALDPRPATPQGQVTPKV 597
Query: 370 -MIDNAFSAS 378
S+
Sbjct: 598 AAPQTKLSSR 607
>gi|294659445|ref|XP_461821.2| DEHA2G06292p [Debaryomyces hansenii CBS767]
gi|199433968|emb|CAG90282.2| DEHA2G06292p [Debaryomyces hansenii]
Length = 794
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 31/211 (14%)
Query: 1 MVD-FILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQF----- 54
M D I V++ V+ E+ + R AR+S + P E+ + Q
Sbjct: 125 MSDEQIRVLRERVE-HEESISKLRKR---KARDSSTETARTSYDPTPLEMKDSQMTYACA 180
Query: 55 -NKLEQAILQV-EKQNQKSLHTSK--------QDKESDIPKSSVTSKENIFLEPRLRSIS 104
KL+++ ++ E KS +SK S+ P +++S + F+ P +IS
Sbjct: 181 TQKLQESYTKMSEHGVSKSPSSSKLFRVFNSTPSPSSNSPVPTISSLQQAFVTPNSPTIS 240
Query: 105 SIL-----RSNKHKKLANILSV------QGKSRTNTNLSPKNFSCRLREILSFSVNTQHE 153
+++ + KH +++ + + SP F LR + NT+ +
Sbjct: 241 NLMNPLDHENGKHIPTDDVVDLPNLGPYESNPYDKVACSPSAFLNYLRGLNQPHDNTKQD 300
Query: 154 YDSSVSPVAAIEHDKSRLRRGKLAGIFSFPT 184
+S P HDKS+ + FS
Sbjct: 301 ENSYAFPFLGDHHDKSKEASITQSPNFSISN 331
>gi|218198954|gb|EEC81381.1| hypothetical protein OsI_24592 [Oryza sativa Indica Group]
Length = 764
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 9/160 (5%)
Query: 28 EHARNSVARRLESM--KPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPK 85
E + + +L+S + + E L+RQ+ LE+ + +VE + +L + +KE+ I
Sbjct: 118 EKHHSEIVAQLKSAIEESKAINEELQRQYASLEENLKRVEAEKLDALRSYGDEKEARI-- 175
Query: 86 SSVTSKENIFLEPRLRSISSILR-SNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREIL 144
+V + N LE R R +++ K L + + T+ N +
Sbjct: 176 -AVEASRNEHLEDLRRIKLEEKRLNDQIKMLQDTNKRLQEYNTSLQQYNSNLQADATKNG 234
Query: 145 SFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPT 184
Q E ++ V + + K K+ + +
Sbjct: 235 ETIAKLQKEKNTMVETMNGL---KDHANSVKMQLDLAKSS 271
>gi|281338222|gb|EFB13806.1| hypothetical protein PANDA_001064 [Ailuropoda melanoleuca]
Length = 381
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 5/121 (4%)
Query: 272 RLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIG-EGR 330
RL V ++ P ++ A + + + V + + G P +
Sbjct: 131 RLAALQGRVPPSQTSQPAHQPPDSRTQAEQAQDLLTQLAAEVAIDESWQRGRPAASVQND 190
Query: 331 VFINKGRGQSSILSGKILWSLQQEKSQGLKGLVI--KGDIPMIDNAFSA--SMTLKCNAD 386
+ GQS+ G+ WSL++EKS+ L + + + + + + D
Sbjct: 191 LNQGGPGGQSTNSKGQATWSLEEEKSRLLAEAAVELREENTRQERILVLAKRLAVLRGQD 250
Query: 387 I 387
Sbjct: 251 P 251
>gi|241708230|ref|XP_002413329.1| hyaluronan mediated motility receptor, putative [Ixodes scapularis]
gi|215507143|gb|EEC16637.1| hyaluronan mediated motility receptor, putative [Ixodes scapularis]
Length = 709
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 16/186 (8%)
Query: 9 QRAVDNLPENTPERRSHIYEHARNSVAR-------RLESMKPRLPKEILERQFNKLEQAI 61
+ V NL E + R H E R V +L + +L L R+ LE ++
Sbjct: 301 KDTVANLKEELAQSRRHEEELVRAEVRLESEIRAIQLREEETKLSFAELSRKCQSLEASL 360
Query: 62 LQVEKQNQKSLHTSKQDKES-----DIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLA 116
+ +Q++ T + S +S + + + F ++R + + + K +
Sbjct: 361 RSSRENHQRATKTLESKIASLKEVLATTQSELETTKAEFDNYKVRVHTVLKQQKKSTAPS 420
Query: 117 NILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKL 176
S G S + RLR + Q E S + A E+DK R +
Sbjct: 421 GDAS-GGDSDAQEKMHSVIEQLRLRIKD---LTEQLEVGQSEAEAAQEEYDKLAQRHQLV 476
Query: 177 AGIFSF 182
A
Sbjct: 477 ASELEA 482
>gi|240140904|ref|YP_002965384.1| hypothetical protein MexAM1_META1p4476 [Methylobacterium
extorquens AM1]
gi|240010881|gb|ACS42107.1| hypothetical protein MexAM1_META1p4476 [Methylobacterium
extorquens AM1]
Length = 94
Score = 39.1 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF +I RAV P + E R +Y R +V R + + Q + +E+
Sbjct: 1 MADFTDLIARAVS--PSMSREERDQVYTVVRQAVQRLQDREGLAGDDPRILLQRHLIEET 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDI 83
I VE + L K ++
Sbjct: 59 IRDVEFDIVRFLTLRKIEQARAA 81
>gi|163853484|ref|YP_001641527.1| hypothetical protein Mext_4086 [Methylobacterium extorquens PA1]
gi|218532342|ref|YP_002423158.1| hypothetical protein Mchl_4454 [Methylobacterium chloromethanicum
CM4]
gi|254563414|ref|YP_003070509.1| hypothetical protein METDI5081 [Methylobacterium extorquens DM4]
gi|163665089|gb|ABY32456.1| hypothetical protein Mext_4086 [Methylobacterium extorquens PA1]
gi|218524645|gb|ACK85230.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
gi|254270692|emb|CAX26696.1| hypothetical protein METDI5081 [Methylobacterium extorquens DM4]
Length = 94
Score = 39.1 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M DF +I RAV P + E R +Y R +V R + + Q + +E+
Sbjct: 1 MADFTDLIARAVS--PSMSREERDQVYTVVRQAVQRLQDREGLAGDDPRILLQRHLIEET 58
Query: 61 ILQVEKQNQKSLHTSKQDKESDI 83
I VE + L K ++
Sbjct: 59 IRDVEFDIVRFLTLRKIEQARAA 81
>gi|269115245|ref|YP_003303008.1| ABC transporter ATP-binding protein [Mycoplasma hominis]
gi|268322870|emb|CAX37605.1| P115-like (Mycoplasma hyorhinis) ABCtransporter ATP-binding protein
[Mycoplasma hominis ATCC 23114]
Length = 978
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 5/206 (2%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
+ N+ E+TPE+R I+E A + + + ++ + E + ++ I + E+Q +
Sbjct: 146 TISNIAESTPEKRREIFEDAAGTSMYKSKKIEAQRKLEKTQEALEQISILIQEQERQLKP 205
Query: 71 SLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRS-NKHKKLANILSVQGKSR--- 126
+++ K + E L S L N + N++ + +++
Sbjct: 206 LQRQAEKAKIYKTKAEQLKEVEVALLVHDFMDYSDKLEKLNVEGQDYNLIKEELETKIRV 265
Query: 127 -TNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTG 185
+ F L + E ++ + +++ R L+G +
Sbjct: 266 YNEASEQKSKFVLELENNIKKISERLSEISEEITTLEIRNAKEAKHREMLLSGELTISPK 325
Query: 186 SIFWSVHNYFFNKTRGLLSFYSALSE 211
++ +L + + L
Sbjct: 326 EKLAAMKEELNALNTNILGYKTFLET 351
>gi|194742415|ref|XP_001953698.1| GF17098 [Drosophila ananassae]
gi|226707483|sp|B3M268|MOC2B_DROAN RecName: Full=Molybdopterin synthase catalytic subunit; AltName:
Full=Molybdenum cofactor synthesis protein 2 large
subunit; AltName: Full=Molybdenum cofactor synthesis
protein 2B; Short=MOCS2B
gi|190626735|gb|EDV42259.1| GF17098 [Drosophila ananassae]
Length = 363
Score = 38.3 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 13 DNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSL 72
D E + + R +Y+ ++ + ++ + + LE IL +E + +
Sbjct: 268 DGQNEPSVKMRKSLYDSRLLTIESYMGLA--PKSEDDIFSRIKTLEDRILLLESISPEYK 325
Query: 73 HTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSN 110
H + + S P + +++ + L + +++
Sbjct: 326 HFTNIEPSSLEPPAPKKTRKKSYSAHELGMLIEKIKNE 363
>gi|255282894|ref|ZP_05347449.1| hypothetical protein BRYFOR_08247 [Bryantella formatexigens DSM
14469]
gi|255266668|gb|EET59873.1| hypothetical protein BRYFOR_08247 [Bryantella formatexigens DSM
14469]
Length = 1749
Score = 37.9 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 258 KKNVFSGIRPKITRRLLEDGSEVDVGPST-IPVADFANTSNIAFKNYIGGDENSTFVLGK 316
++N + P +T+ DG E D G T N G +E T +
Sbjct: 118 EENTGTQENPDVTQE-QTDGPEADTGTEEKTESVTPPATENTEQTETSGTEEPGTEAPVQ 176
Query: 317 KEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLKGLV 363
++ E P EG+ + + + LQ E + V
Sbjct: 177 QQAEPAEPSGQEGQSAGTEAPAAETGATETAA-VLQAEPPAETEAPV 222
>gi|163761515|ref|ZP_02168587.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
gi|162281229|gb|EDQ31528.1| putative transmembrane protein [Hoeflea phototrophica DFL-43]
Length = 423
Score = 37.9 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 6 LVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVE 65
I+ A++ + R IY+ AR ++ R LE + +E +LE+ I +E
Sbjct: 3 AAIRGALERAGIPGAQERVRIYDSARLALDRSLE-RQGVHEVGRVEAHRARLEELIAGIE 61
Query: 66 KQNQKSLHTSKQDK--------ESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLAN 117
+ + + Q P+ ++ S E + R + +R N A
Sbjct: 62 AEWRPPEADAPQPPPPIPPSVSAVSAPQGTMQSAEFAEIVHPDRVEAPAVRQNPTADSAP 121
Query: 118 ILS 120
+++
Sbjct: 122 LVT 124
>gi|56476799|ref|YP_158388.1| hypothetical protein ebA2426 [Aromatoleum aromaticum EbN1]
gi|56312842|emb|CAI07487.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 217
Score = 37.9 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 7 VIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRL---PKEILERQFNKLEQAILQ 63
V+ + + TP R + E + +A++LE + R P+ E + L+Q I
Sbjct: 37 VLSNLAEEAKDRTPAMRIAVLEGRMDELAQQLEQYRQRPTALPQTRYESERLALDQRIAA 96
Query: 64 VEKQNQKSLHTSKQDKESDIPKSSVTSKE 92
VE +D +S + E
Sbjct: 97 VEA-------ALGDRPTTDALQSLLARLE 118
>gi|1352653|sp|P41508|P115_MYCHR RecName: Full=Protein P115
gi|150165|gb|AAA25423.1| 115 kDa protein [Mycoplasma hyorhinis]
Length = 979
Score = 37.9 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
+ + E TPE+R + E A + +L+ + + +KL+ AI ++E+Q
Sbjct: 146 TISEIAEATPEQRKAVIEEAAGTSKYKLDKEEAQKKLIRTNDAIDKLQGAIKELERQVNS 205
Query: 71 SLHTSKQDKESDIPKSSVTSKE--------NIFLEPRLRSISSILRSNKHKK--LANILS 120
+ + K ++ S E N F E +S+L + + NI +
Sbjct: 206 LDKQASKAKIYLEKSKALESVEVGLIVNDLNFFNEKLNNLNTSLLEVEQQRNDLELNIQT 265
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + + S ++EI S N ++ A IE + + G++
Sbjct: 266 YESSISQTVHFKTEVES-SIQEITSKLDNLKNALSEINLQEARIEERRKLIISGEIVVDQ 324
Query: 181 SFPTGSIFWSVHN 193
I V +
Sbjct: 325 KTKIEEIKKQVES 337
>gi|330723843|gb|AEC46213.1| Protein P115 [Mycoplasma hyorhinis MCLD]
Length = 979
Score = 37.9 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 11/193 (5%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
+ + E TPE+R + E A + +L+ + + +KL+ AI ++E+Q
Sbjct: 146 TISEIAEATPEQRKAVIEEAAGTSKYKLDKEEAQKKLIRTNDAIDKLQGAIKELERQVNS 205
Query: 71 SLHTSKQDKESDIPKSSVTSKE--------NIFLEPRLRSISSILRSNKHKK--LANILS 120
+ + K ++ S E N F E +S+L + + NI +
Sbjct: 206 LDKQASKAKIYLEKSKALESVEVGLIVNDLNFFNEKLNNLNTSLLEVEQQRNDLELNIQT 265
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + + S ++EI S N ++ A IE + + G++
Sbjct: 266 YESSISQTVHFKTEVES-SIQEITSKLDNLKNALSEINLQEARIEERRKLIISGEIVVDQ 324
Query: 181 SFPTGSIFWSVHN 193
I V +
Sbjct: 325 KTKIEEIKKQVES 337
>gi|237795728|ref|YP_002863280.1| phage tail tape measure protein, family, core region [Clostridium
botulinum Ba4 str. 657]
gi|229264128|gb|ACQ55161.1| phage tail tape measure protein, family, core region [Clostridium
botulinum Ba4 str. 657]
Length = 1962
Score = 37.9 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 5/181 (2%)
Query: 9 QRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI--LQVEK 66
+ + EN + + IYE R S+ ++LE + K+ + + I +K
Sbjct: 1783 KEQLQKEKENELKNINSIYESNRQSLEKQLEDYRSFCAKKTNDAALQAEAERIIMDNNQK 1842
Query: 67 QNQKSLHTSKQ--DKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGK 124
+ + LH+ ++ + + +E I+SI S + + + + S+ +
Sbjct: 1843 EIIELLHSYEEAYQQAGQSLGEKLVEGFRPKIEELKDMIASIQESFEVARNSALNSMVAQ 1902
Query: 125 SRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPT 184
S ++ P + + I + H + SP A+ + + +F T
Sbjct: 1903 SSAINSIQPYSSNASSTSIDNSRSVVNHNSFTFNSP-RALSPSEMMRKNEVTIRNLNFST 1961
Query: 185 G 185
Sbjct: 1962 S 1962
>gi|31873670|emb|CAD97791.1| hypothetical protein [Homo sapiens]
Length = 2446
Score = 37.9 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 5/182 (2%)
Query: 167 DKSRLRRGKLAGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLG 226
K LR + A ++ +I + + L S++ ++ ++I
Sbjct: 1049 SKYPLRNLQPASEYTVSLVAIKGNQESPKATGVFTTLQPGSSIPPYNTEVTETTIVITWT 1108
Query: 227 MAIGVSYSIGKSKGSITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPST 286
A + + +G R + D G++ + G+ T ++L DG E D
Sbjct: 1109 PAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDGQERDA---- 1164
Query: 287 IPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGK 346
P+ + T N T VL P I R+ GQ G+
Sbjct: 1165 -PIVNKVVTPLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLGE 1223
Query: 347 IL 348
++
Sbjct: 1224 VV 1225
>gi|148252635|ref|YP_001237220.1| hypothetical protein BBta_1062 [Bradyrhizobium sp. BTAi1]
gi|146404808|gb|ABQ33314.1| hypothetical protein BBta_1062 [Bradyrhizobium sp. BTAi1]
Length = 399
Score = 37.5 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 2 VDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAI 61
+++ L +QR + L E+ E R +Y+ AR + + M + ++ LE AI
Sbjct: 21 IEYALTLQRMITRLTEDPAELRLTVYDFARARLKDQSSWMDSTEQERLVA----ALETAI 76
Query: 62 LQVEKQNQK 70
VE+ +
Sbjct: 77 QGVERFEAR 85
>gi|302559622|ref|ZP_07311964.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302477240|gb|EFL40333.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 278
Score = 37.5 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK----SLHTS 75
P +R E AR P L +E ER E+ I +V + L
Sbjct: 137 PPQRVRPSEEARKLYRDLARKAHPDLAQEDKERARR--EEFITRVNAAYARGNADELREL 194
Query: 76 KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKN 135
+ + V S E+ L RL ++ R + L +G + L+P +
Sbjct: 195 AAEWAAGPELRHVPS-ESEELYARLEWLA---RRKELLTLVARQLEEGAIGSMLRLAPDD 250
Query: 136 FSCRLREILSFSVNTQHEYDSSVSPVAA 163
L EI E ++ ++ + A
Sbjct: 251 PDKLLEEIAGQLSAQVTEREAELAALLA 278
>gi|327541946|gb|EGF28450.1| efflux transporter, RND family, MFP subunit [Rhodopirellula baltica
WH47]
Length = 428
Score = 37.1 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 51 ERQFNKLEQAILQVEKQNQKSLHTSK-QDKESDIPKSSVTSKENIFLEPRLRSISSILRS 109
++Q +E I + E Q +++ + ++ + ++ ++
Sbjct: 87 KQQRRVIEAKIRRSESQEKQAESQVELAQASKKSAEAKLAQAKSEVDAVEASVAAATAEF 146
Query: 110 NKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKS 169
N+ + L + S+Q + + + S R + + S + Q + + + + V + D
Sbjct: 147 NRTEDLVSRGSLQNRMLDEARMKRDSESARKQAVQSAVASAQADVEVASASVESARADLE 206
Query: 170 RLR 172
R
Sbjct: 207 TAR 209
>gi|326443736|ref|ZP_08218470.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
Length = 183
Score = 37.1 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 14 NLPENTPERRSHIYE--HARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS 71
L E T RS +YE +R +V L ++ + ++ + + A VE ++
Sbjct: 32 ALAERTGLARSSVYEYFRSRAAVVEELCAVDFPVWAAEVQTAMERADSADATVEAYVRRQ 91
Query: 72 LHTSKQDKESDIPKSSVTSKEN 93
L + + S + +
Sbjct: 92 LELVGDRRHRAVVAISASELDA 113
>gi|237832749|ref|XP_002365672.1| putative zinc finger motif, C2HC5-type domain-containing protein
[Toxoplasma gondii ME49]
gi|211963336|gb|EEA98531.1| putative zinc finger motif, C2HC5-type domain-containing protein
[Toxoplasma gondii ME49]
Length = 1142
Score = 37.1 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 29/137 (21%)
Query: 23 RSHIY---EHARNSVARRLE--SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTS-- 75
++ IY E R + + L+ + P L KE RQ +LE+ QVE Q +
Sbjct: 597 KTKIYFDEEKKRGAEEKELKKPNAFPPLSKEDTRRQLERLEEIQRQVEAQAARRWRDERE 656
Query: 76 -------------------KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNK---HK 113
+KE+ S ++S +N L R + +L++++
Sbjct: 657 AEEELAEWEAEAGEIFADRDDEKENVQHSSGLSSVQNPSLSATSRRLLEVLQASRLEGGG 716
Query: 114 KLANILSVQGKSRTNTN 130
+ A++ S K R+
Sbjct: 717 EPADVASWAPKPRSRGG 733
>gi|304373284|ref|YP_003856493.1| Protein P115 [Mycoplasma hyorhinis HUB-1]
gi|304309475|gb|ADM21955.1| Protein P115 [Mycoplasma hyorhinis HUB-1]
Length = 979
Score = 37.1 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 11/193 (5%)
Query: 11 AVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQK 70
+ + E TPE+R + E A + +L+ + + +KL+ AI ++E+Q
Sbjct: 146 TISEIAEATPEQRKAVIEEAAGTSKYKLDKEEAQKKLIRTNDAIDKLQGAIKELERQVNS 205
Query: 71 SLHTSKQDKESDIPKSSVTSKE--------NIFLEPRLRSISSILRSNKHKK--LANILS 120
+ + K ++ S E N F E S+L + + NI +
Sbjct: 206 LDKQASKAKIYLEKSKALESVEVGLIVNDLNFFNEKLNNLNISLLEVEQQRNDLELNIQT 265
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
+ + + S ++EI S N ++ A IE + + G++
Sbjct: 266 YESSISQTVHFKTEVES-SIQEITSKLDNLKNALSEINLQEARIEERRKLIISGEIVVDQ 324
Query: 181 SFPTGSIFWSVHN 193
I V +
Sbjct: 325 KTKIEEIKKQVES 337
>gi|315185569|gb|EFU19338.1| P83100 family protein [Spirochaeta thermophila DSM 6578]
Length = 521
Score = 37.1 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 30 ARNSVARRLESMKPRLPKE--ILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSS 87
A + + + + RL +E +LE Q LEQ +VE+ ++ S++++++ K +
Sbjct: 241 ALEAQKQEVTEEETRLAEEKAVLEAQKQTLEQEKARVEETLAQAPPGSEEERQALEEKRA 300
Query: 88 VTSKENIFLEPRLRSISSILRSNKHK 113
V KE + R + K
Sbjct: 301 VEEKEAEIARMEEETAEKETRIEEEK 326
>gi|221488129|gb|EEE26343.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 1127
Score = 37.1 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 29/134 (21%)
Query: 23 RSHIY---EHARNSVARRLE--SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTS-- 75
++ IY E R + + L+ + P L KE RQ +LE+ QVE Q +
Sbjct: 582 KTKIYFDEEKKRGAEEKELKKPNAFPPLSKEDTRRQLERLEEIQRQVEAQAARRWRDERE 641
Query: 76 -------------------KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNK---HK 113
+KE+ S + S +N L R + +L++++
Sbjct: 642 AEEELAEWEAEAGEIFADRDDEKENVQHSSGLASVQNPSLSATSRRLLEVLQASRLEGGG 701
Query: 114 KLANILSVQGKSRT 127
+ A++ S K R+
Sbjct: 702 EPADVASWAPKPRS 715
>gi|221508646|gb|EEE34215.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 1142
Score = 37.1 bits (84), Expect = 7.7, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 29/134 (21%)
Query: 23 RSHIY---EHARNSVARRLE--SMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTS-- 75
++ IY E R + + L+ + P L KE RQ +LE+ QVE Q +
Sbjct: 597 KTKIYFDEEKKRGAEEKELKKPNAFPPLSKEDTRRQLERLEEIQRQVEAQAARRWRDERE 656
Query: 76 -------------------KQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNK---HK 113
+KE+ S + S +N L R + +L++++
Sbjct: 657 AEEELAEWEAEAGEIFADRDDEKENVQHSSGLASVQNPSLSATSRRLLEVLQASRLEGGG 716
Query: 114 KLANILSVQGKSRT 127
+ A++ S K R+
Sbjct: 717 EPADVASWAPKPRS 730
>gi|294815384|ref|ZP_06774027.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC
27064]
gi|294327983|gb|EFG09626.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC
27064]
Length = 191
Score = 36.7 bits (83), Expect = 7.9, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 14 NLPENTPERRSHIYE--HARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKS 71
L E T RS +YE +R +V L ++ + ++ + + A VE ++
Sbjct: 40 ALAERTGLARSSVYEYFRSRAAVVEELCAVDFPVWAAEVQTAMERADSADATVEAYVRRQ 99
Query: 72 LHTSKQDKESDIPKSSVTSKEN 93
L + + S + +
Sbjct: 100 LELVGDRRHRAVVAISASELDA 121
>gi|297666364|ref|XP_002811499.1| PREDICTED: forkhead-associated domain-containing protein 1-like
[Pongo abelii]
Length = 1010
Score = 36.7 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
M + ++ + L E+ + ++ + + A R++ + ++ L RQ LE +
Sbjct: 310 MQELESLLAQQQKALAESITQEKNRV-KEALEVEQTRVQEL-----EKRLARQKEVLESS 363
Query: 61 ILQVEKQNQKSLHTSK---QDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLAN 117
I +++ +++L + K QD E+ + + S+ NI E R + K + L N
Sbjct: 364 IAHEKRKAKEALESEKRKVQDLENHLTQQKEISESNIAYEKRKAKEAMEKEKKKVQDLEN 423
Query: 118 ILSVQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAI 164
L+ Q + + +L + L+ TQ + ++
Sbjct: 424 RLTQQKEELELKEQKEDVLNNKLSDALAMVEETQKTKATESLKAESL 470
>gi|189537765|ref|XP_001920876.1| PREDICTED: ankyrin repeat domain-containing protein 26 [Danio rerio]
Length = 2319
Score = 36.7 bits (83), Expect = 8.5, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query: 21 ERRSHIYEHARNSVARRLESMKPRL-----PKEILE--------RQFNKLEQAILQVEKQ 67
+ R E AR + +LE + L +E LE Q LEQ I +E +
Sbjct: 2066 QYRRDTEERARQEIRHKLEEVNLFLQTQAASQEALEQMKAANESSQRAHLEQRIRDLEAE 2125
Query: 68 NQKSLHTSKQDK-ESDIPKSSVTSKENIF---LEPRLRSISSILRSNKHKKLANILSVQG 123
+S + + + D +S + + ++ L R + + RSN+ AN +
Sbjct: 2126 LSRSRSVQQDSQIQRDSSQSELQRYKQLYGEELRLRKSLAAKLDRSNERLAEANTKLLSE 2185
Query: 124 KSRTNTNLSPKNFSCRLR--EILSFSVNTQHEYDSSVSPV 161
+ R+ + LS + L + S+ + Y +S+ P+
Sbjct: 2186 RQRSKSLLSGSFMNAGLAAPALDVSSLGSVGAYGASLGPL 2225
>gi|149636044|ref|XP_001506552.1| PREDICTED: similar to collagen type XX alpha 1 [Ornithorhynchus
anatinus]
Length = 1500
Score = 36.7 bits (83), Expect = 9.1, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 285 STIPVADFANTSNIAFKNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILS 344
++ S + ++ + + E P R K +SS
Sbjct: 130 ASAEPKSSPGGSPESAQSPEPEATSPSPGRDSLIPERDRPERKRQRPLGGKSTSKSSSTL 189
Query: 345 GKILWSLQQEKSQGLKGLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKE 404
+ S + K ++ M D A TLK + + + ++I+F
Sbjct: 190 NAT-----EGTSAPPRQSTDKLELEMPDRDHQAQDTLKRGSHFQCNSSAPVDIIFLVD-- 242
Query: 405 SQDAVVDLRRISMRKTDNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKI 457
+ R + R + LI F I+++ I L DP +
Sbjct: 243 ---GSWSIGRSNFRLVREFLASLIS--PFNIARDKISIGLSQYSGDPRTEWDL 290
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.305 0.120 0.302
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,340,577,781
Number of Sequences: 14124377
Number of extensions: 285959282
Number of successful extensions: 925114
Number of sequences better than 10.0: 452
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 923703
Number of HSP's gapped (non-prelim): 1433
length of query: 503
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 360
effective length of database: 2,823,007,719
effective search space: 1016282778840
effective search space used: 1016282778840
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 83 (36.8 bits)