RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(503 letters)
>gnl|CDD|39853 KOG4654, KOG4654, KOG4654, Uncharacterized conserved protein
[Function unknown].
Length = 252
Score = 34.7 bits (79), Expect = 0.058
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 20 PERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKL-EQAILQVEKQNQKSLHTSKQD 78
+ S + A N++ +E P++ +L + +V K S+ +KQD
Sbjct: 157 KDAASKVL-GALNNILAIIEHFNPKIEDYAAVNHIPQLSADEVEEVIKAELDSIPLAKQD 215
Query: 79 KESDIPKSSVTSKENIFLEPRLRSISSILRSN 110
+ KE F + R I+ +LR
Sbjct: 216 AFDGVEPFKEQHKEAAFFKEASRGIADLLRRK 247
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 31.7 bits (72), Expect = 0.42
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
Query: 27 YEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKS 86
+E LE +K +L + + E + ++E A + +K+ + +Q+ E
Sbjct: 1366 FEEEVLQRLEELEELKKKLQQRLQELE-EQIEAANAKNASL-EKAKNRLQQELEDLQLDL 1423
Query: 87 SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLR 141
+ LE + + +L K K + R LS + +
Sbjct: 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNA 1478
>gnl|CDD|34476 COG4867, COG4867, Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 652
Score = 31.6 bits (71), Expect = 0.57
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 12 VDNLPENTPERRSHIYEHA-RNSVAR-RLESMKPRLPKEILERQFNKLEQAILQVEKQNQ 69
+D LPE+ + + E+ R+ AR + E +K L +E+L+++F ++QA+ ++
Sbjct: 121 LDALPESPAKAVQELAEYRWRSGQAREKYEQIKDLLGRELLDQRFAGMKQALAGATDDDR 180
Query: 70 KSLHT---------SKQDKESDIPK--SSVTSKENIFLEPRLRSISSIL-----RSNKHK 113
+ + K + D + +K F R++ +L R+
Sbjct: 181 RRVTEMLDDLNDLLDKHARGEDTQRDFDEFMTKHGEFFPENPRNVEELLDSLAARAAAAS 240
Query: 114 KLANILS 120
+ N LS
Sbjct: 241 RFRNSLS 247
>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
protein 2 (chromosome condensation complex Condensin,
subunit E) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1174
Score = 30.7 bits (69), Expect = 0.87
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 24/162 (14%)
Query: 17 ENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSK 76
+ ERR E + +R E L K E + +LE L+ E + K
Sbjct: 782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQL 841
Query: 77 QDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNF 136
+ + S + KS + N K+ + K++
Sbjct: 842 EKQISSL-KSEL--------------------GNLEAKVDKVEKDVKKAQAELKDQKAKQ 880
Query: 137 ---SCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGK 175
+ +L+ E +EH+ ++L K
Sbjct: 881 RDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922
>gnl|CDD|36342 KOG1127, KOG1127, KOG1127, TPR repeat-containing protein [RNA
processing and modification].
Length = 1238
Score = 30.8 bits (69), Expect = 1.0
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 287 IPVADFANTSNIAFKNYIGGDENST-------FVLGKKEIE-EGNPLIGE-GRVFINKGR 337
P FA +N + ++ + +L K E + N + GR+ ++ G
Sbjct: 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022
Query: 338 GQSSILSGKILWSLQQEKSQGLK-GLVIKGDIPMIDNAFSASMTL-KCNADISLSITHVM 395
+S+ + W E +G L K D F ++++ +D + + V
Sbjct: 1023 FESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082
Query: 396 EIMFS 400
M
Sbjct: 1083 VCMGL 1087
>gnl|CDD|38923 KOG3719, KOG3719, KOG3719, Carnitine O-acyltransferase CPT2/YAT1
[Lipid transport and metabolism].
Length = 638
Score = 30.3 bits (68), Expect = 1.3
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 32 NSVARRLESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTSK 91
+++ R LES+KP L QF K EQ I E LH ++D +S S+
Sbjct: 33 DTLNRYLESLKPLLD----PEQFRKTEQTIRSFENNIGSKLHEKLLSYDADNKHTSYISQ 88
Query: 92 EN 93
Sbjct: 89 PW 90
>gnl|CDD|177209 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 30.2 bits (69), Expect = 1.3
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 179 IFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFL-IILLGMAIGVSYSIGK 237
F S + F+ + G LSF L + FVFL ++LL + + V
Sbjct: 98 FFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYY 157
Query: 238 SKGSI 242
+GS+
Sbjct: 158 EEGSL 162
>gnl|CDD|36983 KOG1772, KOG1772, KOG1772, Vacuolar H+-ATPase V1 sector, subunit
G [Energy production and conversion].
Length = 108
Score = 29.5 bits (66), Expect = 1.9
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 21 ERRSH-IYEHARNSVARRLESMKPRLPKEIL------ERQFNKLEQAILQVEKQNQKSLH 73
E+R+ E AR RRL+ K KEI E++F + E A + +K L
Sbjct: 15 EKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLE 74
Query: 74 TSKQDKESDIPKSSVTSKENI 94
DK + + S+ + +++
Sbjct: 75 QETDDKIAGLKTSAQKNSDDV 95
>gnl|CDD|38868 KOG3664, KOG3664, KOG3664, Predicted patched transmembrane receptor
[Signal transduction mechanisms].
Length = 999
Score = 29.6 bits (66), Expect = 2.1
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 162 AAIEHDKSRLRRGKL--AGIFSFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFV 219
I D L TGS F + F + LS AL + +
Sbjct: 322 ELILTDSLLASLSALLVMASVWIYTGSAFIT----FMSIVAICLSLGVALFFYAVVLGID 377
Query: 220 FLIILLGMAIGVSYSIG 236
F L +A+ V IG
Sbjct: 378 FFPYLNLVAVVVIIGIG 394
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This
family represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialized cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 29.5 bits (67), Expect = 2.5
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 21 ERR-SHIYEHARNSVARRLESMKPRLPKEI------LERQFNKLEQAILQVEKQNQKSLH 73
E+ + I AR A+RL+ K KEI E +F + E + +K +
Sbjct: 13 EKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIE 72
Query: 74 TSKQDKESDIPKSSVTSKE 92
++K ++ +S +KE
Sbjct: 73 KETEEKIDELKRSFNKNKE 91
>gnl|CDD|48423 cd03159, TM4SF9_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF9_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 9 (TM4SF9) or Tetraspanin-5 and related
proteins. TM4SF9 is strongly expressed witin the central
nervous system, and expression levels appear to
correlate with differentiation status of particular
neurons, hinting at a role in neuronal maturation..
Length = 121
Score = 28.7 bits (64), Expect = 3.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 127 TNTNLSPKN----FSCRLREILSFSVNTQHEYDSSVSPVAAIEHD 167
T++N S + FSC +++ VNTQ YD P ++H
Sbjct: 59 TDSNPSRERCGVPFSCCVKDPAEDVVNTQCGYDVRKKPELELQHH 103
>gnl|CDD|144067 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 201 GLLSFYSALSEHH--LFKYFVFLIILLGMAIGVSYSIGKSKGSITHFLR 247
G L A+ E L YF+ L+IL + I + + L+
Sbjct: 61 GFLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYRDKLESSLK 109
>gnl|CDD|38963 KOG3759, KOG3759, KOG3759, Uncharacterized RUN domain protein
[Signal transduction mechanisms].
Length = 621
Score = 27.8 bits (61), Expect = 7.1
Identities = 11/59 (18%), Positives = 32/59 (54%)
Query: 39 ESMKPRLPKEILERQFNKLEQAILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLE 97
+ ++LE+Q + ++ I Q+++Q + T+ ++ E ++P++ + K+ L+
Sbjct: 129 LRSESESGNDVLEKQNERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILD 187
>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
protein CAD (includes carbamoyl-phophate synthetase,
aspartate transcarbamylase, and glutamine
amidotransferase) [General function prediction only].
Length = 1435
Score = 28.0 bits (62), Expect = 7.1
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 264 GIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAFKNYIGGDENSTFVLG--KKEIEE 321
G++ R L++ G+EV V P P+A + N G E ++ ++ +E
Sbjct: 181 GLKYNQIRCLVKRGAEVTVVPWDYPIAK-EEYDGLFLSNGPGDPELCPLLVQNVRELLES 239
Query: 322 GNPLIG 327
P+ G
Sbjct: 240 NVPVFG 245
>gnl|CDD|38072 KOG2861, KOG2861, KOG2861, Uncharacterized conserved protein
[Function unknown].
Length = 399
Score = 27.6 bits (61), Expect = 8.7
Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 23/166 (13%)
Query: 31 RNSVARRLESMKPRLPKEILERQFNKLEQAILQVE----KQNQKSLHTSKQDKESDIPKS 86
+ + + L S L QF + V N + L + +S +P+
Sbjct: 36 KTASKKVLLSEHSILDTAGFREQFLPRREYSSFVTPLSDAPNPRELENLGRRHDSLLPRE 95
Query: 87 SVTSKENIFLEPRLRSISSILRSNKHKKLANILSVQGKSRTNTNLSPKNFSCRLREILSF 146
+ E LR K+ K ++L T L F+ L E SF
Sbjct: 96 TAYCTEETLGLKELR---------KYFKSTSLL---------TKLGLAEFNECLYEPTSF 137
Query: 147 SVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIFSFPTGS-IFWSV 191
+ N S S + + S G+ + IF F G +FW+V
Sbjct: 138 NTNYVGLDFSDKSDSSIKPLNGSINGSGEFSEIFVFRYGVVVFWNV 183
>gnl|CDD|132804 cd06894, PX_SNX3_like, The phosphoinositide binding Phox Homology
domain of Sorting Nexin 3 and related proteins. The PX
domain is a phosphoinositide (PI) binding module present
in many proteins with diverse functions. Sorting nexins
(SNXs) make up the largest group among PX domain
containing proteins. They are involved in regulating
membrane traffic and protein sorting in the endosomal
system. The PX domain of SNXs binds PIs and targets the
protein to PI-enriched membranes. SNXs differ from each
other in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway. This
subfamily is composed of SNX3, SNX12, and fungal Grd19.
Grd19 is involved in the localization of late Golgi
membrane proteins in yeast. SNX3/Grp19 associates with
the retromer complex, a membrane coat multimeric complex
required for endosomal retrieval of lysosomal hydrolase
receptors to the Golgi, and functions as a
cargo-specific adaptor for the retromer.
Length = 123
Score = 27.4 bits (61), Expect = 9.3
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 27/93 (29%)
Query: 14 NLP-----ENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQF-------------- 54
NLP E++ RR +E R+ + R + + P LP + L+RQ
Sbjct: 29 NLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDDGIFEEEFI 88
Query: 55 ----NKLEQAILQVE----KQNQKSLHTSKQDK 79
LE I +V QN+K LH Q++
Sbjct: 89 EERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,839,256
Number of extensions: 309775
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 37
Length of query: 503
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 405
Effective length of database: 4,146,055
Effective search space: 1679152275
Effective search space used: 1679152275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)