BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(503 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA
Sbjct: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60
Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS
Sbjct: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120
Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF
Sbjct: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180
Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG
Sbjct: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240
Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF
Sbjct: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300
Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK
Sbjct: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360
Query: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT
Sbjct: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420
Query: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI
Sbjct: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480
Query: 481 DKGKKGADIFKSAIMQWENRSNN 503
DKGKKGADIFKSAIMQWENRSNN
Sbjct: 481 DKGKKGADIFKSAIMQWENRSNN 503
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 227 MAIGVSYSIGKSKGSITHFLRRESL 251
+ IG++ SIG K ++ FL++E +
Sbjct: 2 LIIGLTGSIGTGKTTVAEFLKKEKI 26
>gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 193 NYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGK 237
N+F LL FY+ +S + ++F F + G+ + YSIG
Sbjct: 191 NFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYL---YSIGA 232
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVAD----FANTSNIAFKNYIGGDENSTF 312
S IR ++G E+ S IP D F N+ + FKN G E +
Sbjct: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
>537021.9.peg.410_1
Length = 952
Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 459 EEYRFIDIPITYRSGQKILFTIDK 482
+++ I++P+++RS IL +DK
Sbjct: 253 QKFSIIELPLSFRSTADILTVVDK 276
>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
Length = 458
Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 477 LFTIDKGKKGADIFKSAIMQWENRSN 502
++ +DKGK+ +F+S + +W N +
Sbjct: 173 IWFLDKGKRLGRVFQSFVARWFNTTQ 198
>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
str. psy62]
Length = 343
Score = 23.5 bits (49), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 28 EHARNSVARRLESMKPRLPKEILERQFNKLEQAIL 62
EH +NS+ R E K LE+ NK E L
Sbjct: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,178
Number of Sequences: 1233
Number of extensions: 14407
Number of successful extensions: 52
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 12
length of query: 503
length of database: 328,796
effective HSP length: 78
effective length of query: 425
effective length of database: 232,622
effective search space: 98864350
effective search space used: 98864350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)