BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (503 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 503 Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/503 (100%), Positives = 503/503 (100%) Query: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA Sbjct: 1 MVDFILVIQRAVDNLPENTPERRSHIYEHARNSVARRLESMKPRLPKEILERQFNKLEQA 60 Query: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS Sbjct: 61 ILQVEKQNQKSLHTSKQDKESDIPKSSVTSKENIFLEPRLRSISSILRSNKHKKLANILS 120 Query: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF Sbjct: 121 VQGKSRTNTNLSPKNFSCRLREILSFSVNTQHEYDSSVSPVAAIEHDKSRLRRGKLAGIF 180 Query: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG Sbjct: 181 SFPTGSIFWSVHNYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGKSKG 240 Query: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF Sbjct: 241 SITHFLRRESLDGGNVDKKNVFSGIRPKITRRLLEDGSEVDVGPSTIPVADFANTSNIAF 300 Query: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK Sbjct: 301 KNYIGGDENSTFVLGKKEIEEGNPLIGEGRVFINKGRGQSSILSGKILWSLQQEKSQGLK 360 Query: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT Sbjct: 361 GLVIKGDIPMIDNAFSASMTLKCNADISLSITHVMEIMFSFPKESQDAVVDLRRISMRKT 420 Query: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI Sbjct: 421 DNSPSVLIDSNIFVISKNSYLISLKGSEEDPFRNSKILEEYRFIDIPITYRSGQKILFTI 480 Query: 481 DKGKKGADIFKSAIMQWENRSNN 503 DKGKKGADIFKSAIMQWENRSNN Sbjct: 481 DKGKKGADIFKSAIMQWENRSNN 503 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 227 MAIGVSYSIGKSKGSITHFLRRESL 251 + IG++ SIG K ++ FL++E + Sbjct: 2 LIIGLTGSIGTGKTTVAEFLKKEKI 26 >gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 193 NYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGK 237 N+F LL FY+ +S + ++F F + G+ + YSIG Sbjct: 191 NFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYL---YSIGA 232 >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 263 SGIRPKITRRLLEDGSEVDVGPSTIPVAD----FANTSNIAFKNYIGGDENSTF 312 S IR ++G E+ S IP D F N+ + FKN G E + Sbjct: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 >537021.9.peg.410_1 Length = 952 Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/24 (33%), Positives = 17/24 (70%) Query: 459 EEYRFIDIPITYRSGQKILFTIDK 482 +++ I++P+++RS IL +DK Sbjct: 253 QKFSIIELPLSFRSTADILTVVDK 276 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 17/26 (65%) Query: 477 LFTIDKGKKGADIFKSAIMQWENRSN 502 ++ +DKGK+ +F+S + +W N + Sbjct: 173 IWFLDKGKRLGRVFQSFVARWFNTTQ 198 >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 23.5 bits (49), Expect = 8.3, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 16/35 (45%) Query: 28 EHARNSVARRLESMKPRLPKEILERQFNKLEQAIL 62 EH +NS+ R E K LE+ NK E L Sbjct: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.134 0.374 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,178 Number of Sequences: 1233 Number of extensions: 14407 Number of successful extensions: 52 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 12 length of query: 503 length of database: 328,796 effective HSP length: 78 effective length of query: 425 effective length of database: 232,622 effective search space: 98864350 effective search space used: 98864350 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)