Query gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 432 No_of_seqs 150 out of 1931 Neff 5.6 Searched_HMMs 23785 Date Tue May 31 20:10:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780613.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3hid_A Adenylosuccinate synthe 100.0 0 0 1240.3 40.1 429 1-432 1-432 (432) 2 2v40_A Adenylosuccinate synthe 100.0 0 0 1204.6 41.2 421 3-426 33-458 (459) 3 1p9b_A Adenylosuccinate synthe 100.0 0 0 1204.3 39.7 422 2-431 15-440 (442) 4 1dj2_A Adenylosuccinate synthe 100.0 0 0 1198.0 35.5 423 1-426 18-443 (443) 5 2d7u_A Adenylosuccinate synthe 100.0 0 0 975.0 26.3 337 1-430 1-339 (339) 6 1zu4_A FTSY; GTPase, signal re 72.8 4.6 0.00019 19.1 5.1 26 400-425 273-298 (320) 7 3b9q_A Chloroplast SRP recepto 70.0 5.3 0.00022 18.7 6.2 26 400-425 265-290 (302) 8 3kl4_A SRP54, signal recogniti 68.7 5.6 0.00024 18.5 5.9 15 322-336 236-250 (433) 9 2qy9_A Cell division protein F 63.8 6.9 0.00029 17.9 6.2 26 400-425 263-288 (309) 10 2og2_A Putative signal recogni 53.3 10 0.00043 16.7 6.3 25 400-424 322-346 (359) 11 1rj9_A FTSY, signal recognitio 48.9 12 0.0005 16.2 6.5 23 402-424 268-290 (304) 12 1j8m_F SRP54, signal recogniti 44.3 14 0.00059 15.7 4.7 25 400-424 258-282 (297) 13 1vma_A Cell division protein F 36.3 18 0.00077 14.9 6.4 25 400-424 268-292 (306) 14 2bl5_A MGC83862 protein, quaki 33.4 20 0.00085 14.7 2.3 15 106-120 22-36 (140) 15 2px0_A Flagellar biosynthesis 33.3 6.7 0.00028 18.0 -0.2 23 402-424 260-283 (296) 16 1rl2_A Protein (ribosomal prot 33.0 17 0.00072 15.1 1.9 28 42-69 103-133 (137) 17 3db7_A Putative calcium-regula 32.4 21 0.00089 14.5 2.4 25 390-416 75-99 (127) 18 1t6c_A Exopolyphosphatase; alp 30.7 22 0.00091 14.4 2.1 29 392-421 274-302 (315) 19 3mdq_A Exopolyphosphatase; str 29.6 23 0.00099 14.2 2.3 30 390-420 271-300 (315) 20 1yoe_A Hypothetical protein YB 27.4 26 0.0011 13.9 2.9 14 309-322 246-261 (322) 21 2ffh_A Protein (FFH); SRP54, s 27.0 26 0.0011 13.9 5.7 14 323-336 236-249 (425) 22 3cer_A Possible exopolyphospha 26.7 22 0.00094 14.3 1.6 12 225-236 146-157 (343) 23 2kz7_C Carmil homolog, leucine 26.1 18 0.00074 15.1 0.9 24 280-309 18-41 (85) 24 3lb5_A HIT-like protein involv 25.1 28 0.0012 13.7 2.6 16 217-232 41-57 (161) 25 1ryl_A Hypothetical protein YF 23.3 30 0.0013 13.4 5.3 32 184-222 132-163 (167) 26 1ual_A TRNA (guanine-N(1)-)-me 22.8 31 0.0013 13.4 3.0 39 68-107 76-114 (274) 27 1oy5_A TRNA (guanine-N(1)-)-me 22.6 31 0.0013 13.3 3.0 61 65-134 56-116 (257) 28 3hi0_A Putative exopolyphospha 21.9 32 0.0014 13.2 1.9 22 393-414 485-506 (508) 29 1v6t_A Hypothetical UPF0271 pr 21.0 0.52 2.2E-05 25.6 -7.7 39 133-175 58-98 (255) No 1 >3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ... Probab=100.00 E-value=0 Score=1240.30 Aligned_cols=429 Identities=48% Similarity=0.849 Sum_probs=418.4 Q ss_pred CC-EEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHH Q ss_conf 96-39999577586760566655315788899957768777659989899998103242035988259779389679999 Q gi|254780613|r 1 MT-NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAF 79 (432) Q Consensus 1 M~-~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L 79 (432) |+ ++||||+|||||||||||||||+++|+|||||||+||||||+++++||+|||||||+|+|+++|+||+||||||.+| T Consensus 1 m~k~ivVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~g~k~~lhllPSGil~~~~~~vIG~GvVidp~~L 80 (432) T 3hid_A 1 MGKNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVISIIGNGVVLAPDAL 80 (432) T ss_dssp CCCCEEEEESSSSCSCHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCTTTTSTTCEEEECTTBCBCHHHH T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCEEECCCCCEEECCCEEECHHHH T ss_conf 99729997687466772076664506799999967877888689989999999517717605997279889789869999 Q ss_pred HHHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 99999999828988811104403320137000787599887620134656763101356777666545677887509899 Q gi|254780613|r 80 ISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEH 159 (432) Q Consensus 80 ~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~~ 159 (432) ++|++.|+++|++. .+||+||+|||||||||+++|+++|++|++ ++||||||||||||+||++|.|||++||++++. T Consensus 81 ~~Ei~~L~~~gi~~-~~rL~Is~rahli~P~H~~lD~~~E~~rg~--~~iGTTgrGIGpaY~DK~~R~gir~~DL~~~~~ 157 (432) T 3hid_A 81 MKEMTELEARGVPV-RERLLLSEACPLILPYHVALDNAREKARGA--KAIGTTGRGIGPAYEDKVARRGLRVSDLFNKET 157 (432) T ss_dssp HHHHHHHHHTTCCH-HHHEEECTTCBBCCHHHHHHHHHHHHTCC----------TTHHHHHHHHHHTCSCBGGGGGSHHH T ss_pred HHHHHHHHHCCCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHCCCCCEEECCCCHHH T ss_conf 99999998669997-346787064252573677766999997089--754778876178786452278867730216088 Q ss_pred HHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCC Q ss_conf 99999999999888875-23876578899999988888743010202499999884007879998665310101368775 Q gi|254780613|r 160 ISKKIEQLLLHHNALRR-SFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 (432) Q Consensus 160 l~~kl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP 238 (432) |++|++.++.+++.+++ .++..+.+.+++.+++..+.++++|+++|+..+|+++++++++||||||||+|||+|||||| T Consensus 158 ~~~kl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~v~dt~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYP 237 (432) T 3hid_A 158 FAIKLKEIVEYHNFQLVHYYKEAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYP 237 (432) T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCEEEEEECCHHEECCCCCCCC T ss_conf 99999888999999998603557789999999999998641770433899999998579979999174311555778588 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 33433574310134215587887649999960423237842213566842225343078877864556766654779988 Q gi|254780613|r 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVR 318 (432) Q Consensus 239 ~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lk 318 (432) |||||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++| T Consensus 238 ~VTSS~tt~~ga~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfpTEl~de~g~~lre~G~E~GttTGRpRR~GWlD~v~lr 317 (432) T 3hid_A 238 YVTSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVR 317 (432) T ss_dssp SCCSSCCSGGGHHHHHCCCGGGCCEEEEEEESEEEECSSSCCTTBCCSHHHHHHHHHTTCCCSSTTCCCEEEEEEHHHHH T ss_pred CCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHH T ss_conf 73766751545654069982312079999860223316888887667427789988347788766883314642178888 Q ss_pred HHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEE-CCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH Q ss_conf 999874874000010022135776213523631-8878503899935761577799887788865111669888549999 Q gi|254780613|r 319 RSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432) Q Consensus 319 ya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~-~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432) ||+++||+|+||||||||||+|++||||++|++ ||++++.||.+...+++|+|||++||||+++++++++|++||+||| T Consensus 318 ya~~inG~~~lalTklDvL~~~~~ikic~~Y~~~dG~~~~~~P~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~ 397 (432) T 3hid_A 318 RAVQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAAL 397 (432) T ss_dssp HHHHHHTCCEEEEECGGGGTTCSEEEEEEEEECTTSCEESSCCCTTTCSTTCEEEEEEEECCSSCSTTCCSGGGSCHHHH T ss_pred HHHHHCCCCEEEEEEEHHHCCCCCCCCCCCEECCCCCEECCCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHCCHHHH T ss_conf 87864476538986022323476301021303589866145996957763776899987899882113777578459999 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCC Q ss_conf 99999999978957999756985317980586789 Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIMSNPFED 432 (432) Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~~~~f~~ 432 (432) +||++||+++||||+|||+||+|+|||+++||||- T Consensus 398 ~yi~~iE~~~gvpV~~is~GP~R~~~I~~~~~f~~ 432 (432) T 3hid_A 398 NYIQRVEELTGVPIDIISTGPDRDETMILRDPFDA 432 (432) T ss_dssp HHHHHHHHHHSCCEEEEECSSBTTSEEESSCTTCC T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHEEEECCCCCC T ss_conf 99999999989998999738982315982178789 No 2 >2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A* Probab=100.00 E-value=0 Score=1204.65 Aligned_cols=421 Identities=40% Similarity=0.704 Sum_probs=402.7 Q ss_pred EEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHHHHH Q ss_conf 39999577586760566655315788899957768777659989899998103242035988259779389679999999 Q gi|254780613|r 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAFISE 82 (432) Q Consensus 3 ~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L~~E 82 (432) .+||||+|||||||||||||||+++|+|||||||+||||||++++++|+|||||||+|+|+++|+||+||||||++|++| T Consensus 33 v~vVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~g~k~~lhliPSGil~~~~~~vIG~GvVidp~~L~~E 112 (459) T 2v40_A 33 VTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEE 112 (459) T ss_dssp EEEEEESSSSCSSHHHHHHHHHTTCSEEEECSBCSCCCEEEEETTEEEEESSSCGGGGSTTCEEEECTTBEEEHHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCEECCCCCCEEECCCEEEEHHHHHHH T ss_conf 89998377466761275553506899999906877887089999999999558837726997189899799809999999 Q ss_pred HHHHHHCCCCC--CHHHEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-HH Q ss_conf 99999828988--8111044033201370007875998876201-34656763101356777666545677887509-89 Q gi|254780613|r 83 IESLAHQGICV--TPNNLRIANNASLILSIHRDLDMLREGALSP-CGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTD-VE 158 (432) Q Consensus 83 i~~l~~~Gv~~--~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~-~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~-~~ 158 (432) |+.|+++|+.+ ..+||+||+|||||||||+++|+++|+.|+. .+++||||||||||||+||++|+|||++||++ ++ T Consensus 113 i~~l~~~g~~v~~~~~rL~IS~rAhlI~P~H~~lD~~~E~~r~~~~~~kIGTTgrGIGPaY~DK~~R~giR~~DLl~~~~ 192 (459) T 2v40_A 113 AEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFD 192 (459) T ss_dssp HHHHHHHCGGGTTGGGSEEEETTCEEECHHHHHHHHHHHHC------------CCCHHHHHHHHHHTCCCBHHHHTSCHH T ss_pred HHHHHHCCCCCCCCCCCEEEECCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH T ss_conf 99998638987688787899799758660311111666533210257764557887242021344256643301110467 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHH-HCCEEEEECCCCCEEECCCCCC Q ss_conf 999999999999888875238765788999999888887430102024999998840-0787999866531010136877 Q gi|254780613|r 159 HISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESR-KGAHILFEGAQGFLLDNDHGTY 237 (432) Q Consensus 159 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~-~g~~ILfEGAQG~lLDid~GtY 237 (432) .|++|++.+..+++.+ ++....+++++++++..+.++++|+++|+..++++++. +|++||||||||+|||+||||| T Consensus 193 ~l~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~t~~~~~~~l~~~gk~ILfEGAQG~lLDid~GtY 269 (459) T 2v40_A 193 GFSERFKVLANQYKSI---YPTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDFGTY 269 (459) T ss_dssp HHHHHHHHHHHHHHHH---CTTCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCEEEECCSCGGGCTTTSST T ss_pred HHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCC T ss_conf 8999999999877765---0454567999999999999874112234189999998464877999725411342465616 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 53343357431013421558788764999996042323784221356684222534307887786455676665477998 Q gi|254780613|r 238 PFVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASV 317 (432) Q Consensus 238 P~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~l 317 (432) ||||||||+++++++|+|++|+.+++|+||+|||+||||+||||||+++|.+++||+.|+||||||||||||||||+|++ T Consensus 270 P~VTSSnTt~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~e~g~~lr~~G~E~GttTGRpRR~GW~D~v~l 349 (459) T 2v40_A 270 PFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLL 349 (459) T ss_dssp TSSCSSCCSTHHHHHHHTCCGGGEEEEEEEEESSEEESSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHH T ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 77786764063454226989763233888988874213799986767760000132126744773798510575678999 Q ss_pred HHHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH Q ss_conf 89998748740000100221357762135236318878503899935761577799887788865111669888549999 Q gi|254780613|r 318 RRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432) Q Consensus 318 kya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432) |||+++||+|+||||||||||+|++||||++|+++|++++.||++...+++|+|||++||||++|++++++|++||++|| T Consensus 350 r~a~~inG~~~lalTklDvL~~~~~ikiC~~Y~~~G~~~~~~P~~~~~l~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 429 (459) T 2v40_A 350 KYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQ 429 (459) T ss_dssp HHHHHHHCCSEEEEECGGGGGGCSEEEEEEEEEETTEEESSCCSSHHHHTTCEEEEEEEECCCSCCTTCCSGGGSCHHHH T ss_pred HHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEEECCEECCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCHHHH T ss_conf 99987558754899843302688834688888639988034898957752675899976898871005766578469999 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEE Q ss_conf 99999999978957999756985317980 Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIM 426 (432) Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~ 426 (432) +||++||+++||||++||+||+|+|||.+ T Consensus 430 ~yi~~IE~~~gvpv~~is~GP~R~~~I~l 458 (459) T 2v40_A 430 NYVRFIEDELQIPVKWIGVGKSRESMIQL 458 (459) T ss_dssp HHHHHHHHHHTCCEEEEECSSSTTSEEEC T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHEEEC T ss_conf 99999999989988999718984675862 No 3 >1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10 Probab=100.00 E-value=0 Score=1204.32 Aligned_cols=422 Identities=39% Similarity=0.684 Sum_probs=405.8 Q ss_pred CEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHHHHH Q ss_conf 63999957758676056665531578889995776877765998989999810324203598825977938967999999 Q gi|254780613|r 2 TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHAFIS 81 (432) Q Consensus 2 ~~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~L~~ 81 (432) +.+||||+|||||||||||||||+++|+|||||||+||||||++++++|+|||||||+|+|+++|+||+||||||.+|++ T Consensus 15 ~v~vVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~g~k~~lhllPSGi~~~~~~~vIg~GvVidp~~L~~ 94 (442) T 1p9b_A 15 NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVLYDNNISVLGNGMVIHVKSLME 94 (442) T ss_dssp CEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEEETTEEEEESSSCTTTTSTTCEEEECTTCEECHHHHHH T ss_pred CEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEECCEEEEEECCCCEECCCCCEEEECCCEEEEHHHHHH T ss_conf 88999867746677316554250579999994686787608998998999950485760599728988988980999999 Q ss_pred HHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 99999982898881110440332013700078759988762013465676310135677766654567788750989999 Q gi|254780613|r 82 EIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHIS 161 (432) Q Consensus 82 Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~~l~ 161 (432) |+++|+..+ .+||+||+|||||||||+++|+++|.+|++++++||||||||||||+||++|+|||++||++++.|+ T Consensus 95 Ei~~l~~~~----~~rL~Is~ra~li~P~H~~lD~~~E~~r~~g~~~iGTTgrGIGPaY~DK~~R~gir~~Dl~d~~~l~ 170 (442) T 1p9b_A 95 EIESVGGKL----LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFK 170 (442) T ss_dssp HHHHHCTTG----GGGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSSSHHHHHHHHHTTCCCBGGGGGSHHHHH T ss_pred HHHHHCCCC----CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH T ss_conf 999850568----8876886986567857887667776541147765566888786988976540144122115867899 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCCCCC Q ss_conf 99999999988887523876578899999988888743010202499999884007879998665310101368775334 Q gi|254780613|r 162 KKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 (432) Q Consensus 162 ~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP~VT 241 (432) +||+++++.++. .+...+.+.+++.++++.+.++++|+++|+..+|+++++++++||||||||+|||+||||||||| T Consensus 171 ~kl~~l~~~~~~---~~~~~~~~~e~~~~~~~~~~~~l~~~i~dt~~~l~~al~~gk~ILfEGAQG~lLDid~GtYP~VT 247 (442) T 1p9b_A 171 NMYSKLIDHLMD---LYNITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYVT 247 (442) T ss_dssp HHHHHHHHHHHH---HTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSSC T ss_pred HHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCC T ss_conf 999999987755---31233111688999998778985170556899999999879947986143047604668787025 Q ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 33574310134215587887649999960423237842213566842225343078877864556766654779988999 Q gi|254780613|r 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVRRSV 321 (432) Q Consensus 242 SS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lkya~ 321 (432) ||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||++|+||||||||||||||||+|++|||+ T Consensus 248 SS~tt~~~~~~g~Gi~p~~i~~viGV~KaY~TRVG~GPfpTE~~~e~g~~l~~~g~E~GttTgRpRR~GW~D~v~lrya~ 327 (442) T 1p9b_A 248 SSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVK 327 (442) T ss_dssp SSCCSHHHHHHTTTCCGGGCCEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHHHHHH T ss_pred CCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 46751535654058898642079999520544446899887676078899986188767656777656755499999988 Q ss_pred HHCCCCCCEECCCCCCCCCCCCEEEEEEEEC--CEEEE--CCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH Q ss_conf 8748740000100221357762135236318--87850--3899935761577799887788865111669888549999 Q gi|254780613|r 322 IINGVKGIALTKLDVLDGLDELKICVGYRMD--GREVD--FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432) Q Consensus 322 ~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~~--g~~~~--~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432) ++||+|+|+||||||||+|++||||++|+++ |+.++ .||++...+++|+|||++||||++|++++|+|++||+||| T Consensus 328 ~ing~~~l~lTklDvL~~~~~ikicv~Y~~~~~g~~~~~~~~p~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~ 407 (442) T 1p9b_A 328 CINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAK 407 (442) T ss_dssp HHHCCSEEEEECGGGGTTCSEEEEEEEEEETTTCCBCCTTCCCCSHHHHTTEEEEEEEEECCCSCCTTCCSGGGSCHHHH T ss_pred HHCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH T ss_conf 62488758999676025788668987525368875301477997958867886899983798871105988578119999 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCC Q ss_conf 9999999997895799975698531798058678 Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIMSNPFE 431 (432) Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~~~~f~ 431 (432) +||++||+++||||++||+||+|+|||+++| |. T Consensus 408 ~yi~~IE~~~gvpi~~is~GP~R~~~I~~~~-f~ 440 (442) T 1p9b_A 408 KYILAIEKYLKTPIVWIGVGPNRKNMIVKKN-FN 440 (442) T ss_dssp HHHHHHHHHHTCCEEEEECSSSTTCEEECC---- T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEEEC-CC T ss_conf 9999999998999899974898542798706-78 No 4 >1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A {Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A* Probab=100.00 E-value=0 Score=1198.00 Aligned_cols=423 Identities=39% Similarity=0.712 Sum_probs=411.1 Q ss_pred CC-EEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEE-CCEEEEEEECCCCEECCCCCEEECCCEEECHHH Q ss_conf 96-3999957758676056665531578889995776877765998-989999810324203598825977938967999 Q gi|254780613|r 1 MT-NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKV-NDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHA 78 (432) Q Consensus 1 M~-~~vVvG~qwGDEGKGkivd~La~~~d~vvR~~GG~NAGHTVv~-~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~ 78 (432) |+ ..+|||+|||||||||||||||+++|+|||||||+||||||++ +|++|+|||||||+|+|+++|+||+||||||.. T Consensus 18 ~~~v~~VvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv~~~G~k~~lhliPSGil~~~~~~~ig~GvVidp~~ 97 (443) T 1dj2_A 18 LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPG 97 (443) T ss_dssp SCSEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEECSSCCEEEESSSCGGGGSTTCEEEECTTCEECHHH T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEECCCEEEEEECCCCEECCCCCEEEECCCEEECHHH T ss_conf 45525998278466761088887634599999906878878379956993999814684760499728989948986999 Q ss_pred HHHHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99999999982898881110440332013700078759988762013465676310135677766654567788750989 Q gi|254780613|r 79 FISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVE 158 (432) Q Consensus 79 L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~ 158 (432) |++|+++|+++|++.. +||+||+||||++|+|+++|+++|+++++ ++||||||||||||+||++|+|||++||++++ T Consensus 98 L~~Ei~~L~~~g~~~~-~~l~Is~~a~li~p~h~~~D~~~E~~~g~--~~iGTTgrGIGPaY~dk~~R~gir~~DL~~~~ 174 (443) T 1dj2_A 98 LFKEIDGLESNGVSCK-GRILVSDRAHLLFDFHQEVDGLRESELAK--SFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMD 174 (443) T ss_dssp HHHHHHHHHTTTCCCT-TTEEEESSSEECCHHHHHHHHHHHHHSCS--CCCCCCSCCHHHHHHHHHHTCCCBGGGGGCTT T ss_pred HHHHHHHHHHCCCCCC-CCEEEECCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 9999999986288740-12456535530565789989876654078--66475578766999875134664422210056 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCC Q ss_conf 99999999999988887523876578899999988888743010202499999884007879998665310101368775 Q gi|254780613|r 159 HISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 (432) Q Consensus 159 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP 238 (432) .|++|++.++.+++.+++.++..+...++.++++.++.++++||++|+..+++++++++++||||||||+|||+|||||| T Consensus 175 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~g~~ILfEGAQG~lLDid~GtYP 254 (443) T 1dj2_A 175 TLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 254 (443) T ss_dssp THHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHTTTEECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCEEEECCCEEEEECCCCCCC T ss_conf 79999999999999986335677042599999999999982223333099999999779947987154168713678466 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 33433574310134215587887649999960423237842213566842225343078877864556766654779988 Q gi|254780613|r 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVR 318 (432) Q Consensus 239 ~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lk 318 (432) |||||||+++++++|+|++|+.+++|+||+|||+||||+||||||++++.+++||+.|+||||||||||||||||+|++| T Consensus 255 ~VTSSntta~ga~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~~~~lr~~g~E~GttTGRpRR~GW~D~v~lr 334 (443) T 1dj2_A 255 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALK 334 (443) T ss_dssp SSCSSCCSTHHHHHTTTCCTTTCCCEEEEEESEEEESSSSCCTTBCCSHHHHHHHHHHTCBCTTTCCBCEEEEEEHHHHH T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 40027846877775338887631239999985443116888887665112223413211027888875125733399999 Q ss_pred HHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEE-CCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHH Q ss_conf 999874874000010022135776213523631-8878503899935761577799887788865111669888549999 Q gi|254780613|r 319 RSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 (432) Q Consensus 319 ya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~-~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~ 397 (432) ||+++||+|+|+||||||||+|++||||++|+. ||+.++.||++...+++|+||||+||||+++++++++|++||++|| T Consensus 335 ya~~ing~~~l~lTklDvLd~~~~ikvC~~Y~~~dG~~~~~~P~~~~~~~~~~pvye~~~GW~~~~~~~~~~~~LP~~a~ 414 (443) T 1dj2_A 335 FSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQ 414 (443) T ss_dssp HHHHHHTCSEEEEECGGGGGGCSEEEEEEEEECSSSCBCCSCCSCHHHHHHCEEEEEEEECCCSCCTTCCSSTTSCHHHH T ss_pred HHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCHHHH T ss_conf 99985699769997310047988356887777479968114887946744665899977898762116888478669999 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCEEEEE Q ss_conf 99999999978957999756985317980 Q gi|254780613|r 398 NYIRKIEEVLEVPVALLSIGPERENTLIM 426 (432) Q Consensus 398 ~yi~~IE~~~gvpI~~Is~GP~R~~~I~~ 426 (432) +||++||+++||||++||+||+|+|||++ T Consensus 415 ~yi~~IE~~~g~pv~~is~GP~R~~~I~r 443 (443) T 1dj2_A 415 QYVERIEELVGVPIHYIGIGPGRDALIYK 443 (443) T ss_dssp HHHHHHHHHHCSCEEEEECSSSSSCEEEC T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCEEEC T ss_conf 99999999989998999738895537629 No 5 >2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=0 Score=975.03 Aligned_cols=337 Identities=38% Similarity=0.643 Sum_probs=322.9 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHC--CCCCEEEEECCCCCCCCEEEECCEEEEEEECCCCEECCCCCEEECCCEEECHHH Q ss_conf 963999957758676056665531--578889995776877765998989999810324203598825977938967999 Q gi|254780613|r 1 MTNVVVVGLQWGDEGKGKIVDWLS--ENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVVDPHA 78 (432) Q Consensus 1 M~~~vVvG~qwGDEGKGkivd~La--~~~d~vvR~~GG~NAGHTVv~~~~~~~~hllPSG~~~p~~~~~ig~GvVidp~~ 78 (432) |+++||+|+||||||||||||||| .++|+|||||||+||||||+++++||+|||||||+|+|++.++||+|||+||.+ T Consensus 1 M~~~vVvG~qwGDEGKGkivD~La~~~~~~~vvR~~GG~NAGHTVv~~g~~~~~h~lPSG~~~~~~~~~ig~G~vi~p~~ 80 (339) T 2d7u_A 1 MPSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEV 80 (339) T ss_dssp CCCEEEEESSSSCSSHHHHHHHHHHHTCCSEEEECSSSSSCCEEEEETTEEEEESSSCTTTTCSSSBEEECTTSCBCHHH T ss_pred CCEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCEEEEEEECCCEEECCCCEEEECCCEEECHHH T ss_conf 97189993883667721455423257888999983676788868998999999960783750599518988907856899 Q ss_pred HHHHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99999999982898881110440332013700078759988762013465676310135677766654567788750989 Q gi|254780613|r 79 FISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVE 158 (432) Q Consensus 79 L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgrGIGpaY~Dk~~R~giR~~DL~~~~ 158 (432) |++||++|++.|+. +||+||+|||||+|||+++|++.|..++ +||||+|||||||+||++|+|+|+.|+.+ T Consensus 81 l~~Ei~~L~~~gv~---~~l~Is~ra~vi~p~h~~~d~~~e~~~~----~iGtTg~GiGpay~dk~~r~g~r~~d~~~-- 151 (339) T 2d7u_A 81 FFHELEQLKDFNVK---DRVGIDYRCAIIEEKHKQLDRTNGYLHG----KIGTTGSGCGPANADRVMRKAKQAKDVKE-- 151 (339) T ss_dssp HHHHHHHTGGGTGG---GTEEEETTCBBCCHHHHC--------------------CCHHHHHHHHTTTCSCBGGGCSS-- T ss_pred HHHHHHHHHHCCCC---CCEEECCCCEECCHHHHHHHHHHHHCCC----CCCCCCCCCCHHHHHHHCCCCCCCHHHHH-- T ss_conf 99999976532667---7679638763455767777666665178----87778885635345344254534313443-- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEEECCCCCEEECCCCCCC Q ss_conf 99999999999988887523876578899999988888743010202499999884007879998665310101368775 Q gi|254780613|r 159 HISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 (432) Q Consensus 159 ~l~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILfEGAQG~lLDid~GtYP 238 (432) +.|+++|+..+|+++++++++||||||||+|||+|||||| T Consensus 152 ----------------------------------------~~~~v~d~~~~l~~a~~~g~~iLfEGAQG~lLDid~GtYP 191 (339) T 2d7u_A 152 ----------------------------------------LEPYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYP 191 (339) T ss_dssp ----------------------------------------SSTTEECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTT T ss_pred ----------------------------------------HHHHHCHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCC T ss_conf ----------------------------------------2000031899999998769849985034632654668755 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 33433574310134215587887649999960423237842213566842225343078877864556766654779988 Q gi|254780613|r 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVR 318 (432) Q Consensus 239 ~VTSS~T~~~~a~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFPTEl~~~~~~~lr~~g~E~GttTgR~RR~GWlDlv~lk 318 (432) |||||||+++++++++|++|+.+++|+||+|||+||||+||||||++++.+++++ ++||||||||||||||||++++| T Consensus 192 ~VTSS~tt~~~~~~g~Gi~p~~i~~vigV~KAY~TRVG~GPfptE~~~~~~~~l~--~~E~GttTgR~RR~GwlD~v~lr 269 (339) T 2d7u_A 192 YVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADRLG--LVEYGTVTGRRRRVGWFDFEMAR 269 (339) T ss_dssp SSCSSCCSHHHHHHHHTCCGGGCCEEEEEEESSCEECSSSCCTTBCCHHHHHHTT--CCCBCTTTCCBCEEBCCCHHHHH T ss_pred CCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCHHHHHCCC--CCCCCCCCCCCCCCCCCCHHHHH T ss_conf 5555876413111127888431004788841253112478887545505652065--75899372787550225468741 Q ss_pred HHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCCCHHCCCCHHHHHHHHHH Q ss_conf 99987487400001002213577621352363188785038999357615777998877888651116698885499999 Q gi|254780613|r 319 RSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARN 398 (432) Q Consensus 319 ya~~ing~~~l~lTKlDvL~~~~~ikvC~~Y~~~g~~~~~~P~~~~~~~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~~ 398 (432) ||+++||+|+|||||||+|| ++++++++|++||.+|++ T Consensus 270 ~a~~ing~~~laiTklD~ld------------------------------------------~~~~~~~~~~~LP~~a~~ 307 (339) T 2d7u_A 270 YSARINGATMLAVTMLDKYD------------------------------------------KEAFGVTDYDKLPRKAKE 307 (339) T ss_dssp HHHHHTTCSEEEEECGGGTC------------------------------------------GGGTTCCSGGGSCHHHHH T ss_pred HHHECCCCCEEEEECCCCCC------------------------------------------CCCCCCCCHHHCCHHHHH T ss_conf 50110377469997124567------------------------------------------500168675885899999 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEEECCCC Q ss_conf 99999999789579997569853179805867 Q gi|254780613|r 399 YIRKIEEVLEVPVALLSIGPERENTLIMSNPF 430 (432) Q Consensus 399 yi~~IE~~~gvpI~~Is~GP~R~~~I~~~~~f 430 (432) ||++||+++++||++||+||+|+|||+++|.+ T Consensus 308 yi~~IE~~~gvpv~~is~GP~R~~~I~~~~~i 339 (339) T 2d7u_A 308 FIEEIEERVGVPVGLIKTGPELEHIIDRRDTI 339 (339) T ss_dssp HHHHHHHHHSSCEEEEECSSBSSCEEECCC-- T ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEEEECCC T ss_conf 99999999798989998387975178831369 No 6 >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Probab=72.83 E-value=4.6 Score=19.10 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=19.1 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEE Q ss_conf 99999997895799975698531798 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTLI 425 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I~ 425 (432) +--+-..+++||.+||+|..-++... T Consensus 273 ~lsi~~~~~~Pi~fig~Ge~v~Dl~~ 298 (320) T 1zu4_A 273 GLAIKELLNIPIKMIGVGEKVDDLLA 298 (320) T ss_dssp HHHHHHHHCCCEEEEECSSSTTCEEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 99999998979799966989745755 No 7 >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Probab=69.95 E-value=5.3 Score=18.67 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=19.7 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEE Q ss_conf 99999997895799975698531798 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTLI 425 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I~ 425 (432) +--+-..++.||.+||+|..-++... T Consensus 265 ~lsi~~~~~~PI~~ig~Ge~v~Dl~~ 290 (302) T 3b9q_A 265 VVSVVEELGIPVKFIGVGEAVEDLQP 290 (302) T ss_dssp HHHHHHHHCCCEEEEECSSSGGGEEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 99999998949799958998403655 No 8 >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A Probab=68.73 E-value=5.6 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=7.6 Q ss_pred HHCCCCCCEECCCCC Q ss_conf 874874000010022 Q gi|254780613|r 322 IINGVKGIALTKLDV 336 (432) Q Consensus 322 ~ing~~~l~lTKlDv 336 (432) ..-+++++++||||= T Consensus 236 ~~~~~~giIlTKlD~ 250 (433) T 3kl4_A 236 QASPIGSVIITKMDG 250 (433) T ss_dssp HHCSSEEEEEECGGG T ss_pred CCCCCCEEEEEEECC T ss_conf 357765268863237 No 9 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Probab=63.79 E-value=6.9 Score=17.87 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=18.6 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEEE Q ss_conf 99999997895799975698531798 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTLI 425 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I~ 425 (432) +--+-..++.||.+|++|..-++... T Consensus 263 ~ls~~~~~~~Pi~fig~Ge~v~Dl~~ 288 (309) T 2qy9_A 263 IFSVADQFGIPIRYIGVGERIEDLRP 288 (309) T ss_dssp HHHHHHHHCCCEEEEECSSSGGGEEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 99999998979799968999513642 No 10 >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Probab=53.33 E-value=10 Score=16.69 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=19.8 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEE Q ss_conf 9999999789579997569853179 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTL 424 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I 424 (432) +--|-..+++||.+||+|..-++.. T Consensus 322 ~lsi~~~~~~Pi~fig~Ge~v~DL~ 346 (359) T 2og2_A 322 VVSVVEELGIPVKFIGVGEAVEDLQ 346 (359) T ss_dssp HHHHHHHHCCCEEEEECSSSGGGEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCC T ss_conf 9999999895979994798811164 No 11 >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D* Probab=48.86 E-value=12 Score=16.22 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=17.0 Q ss_pred HHHHHHCCCEEEEEECCCCCEEE Q ss_conf 99999789579997569853179 Q gi|254780613|r 402 KIEEVLEVPVALLSIGPERENTL 424 (432) Q Consensus 402 ~IE~~~gvpI~~Is~GP~R~~~I 424 (432) -+-..++.||++||+|..-++.. T Consensus 268 s~~~~~~~Pi~~i~~Gq~p~Dl~ 290 (304) T 1rj9_A 268 PIVRTLKVPIKFVGVGEGPDDLQ 290 (304) T ss_dssp HHHHHHCCCEEEEECSSSTTCEE T ss_pred HHHHHHCCCEEEEECCCCHHHCC T ss_conf 99999897979995899957485 No 12 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Probab=44.26 E-value=14 Score=15.75 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=18.4 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEE Q ss_conf 9999999789579997569853179 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTL 424 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I 424 (432) +--+-..++.||.+|++|+.-++.- T Consensus 258 ~ls~~~~~~~Pi~fig~Gq~v~DL~ 282 (297) T 1j8m_F 258 ALSAVAATGATIKFIGTGEKIDELE 282 (297) T ss_dssp HHHHHHTTTCCEEEEECSSSTTCEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCC T ss_conf 9999999896979994699851364 No 13 >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Probab=36.32 E-value=18 Score=14.93 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=18.9 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEE Q ss_conf 9999999789579997569853179 Q gi|254780613|r 400 IRKIEEVLEVPVALLSIGPERENTL 424 (432) Q Consensus 400 i~~IE~~~gvpI~~Is~GP~R~~~I 424 (432) +--+-..+++||.+||+|..-++.- T Consensus 268 ~lsi~~~~~~PI~fig~Ge~v~Dl~ 292 (306) T 1vma_A 268 TLAIARELGIPIKFIGVGEKAEDLR 292 (306) T ss_dssp HHHHHHHHCCCEEEEECSSSGGGEE T ss_pred HHHHHHHHCCCEEEEECCCCHHHCC T ss_conf 9999999898979994799946385 No 14 >2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Probab=33.45 E-value=20 Score=14.66 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=6.3 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 137000787599887 Q gi|254780613|r 106 LILSIHRDLDMLREG 120 (432) Q Consensus 106 ii~P~H~~~D~~~E~ 120 (432) |+=|--..+.++++. T Consensus 22 IiGPrG~t~k~le~e 36 (140) T 2bl5_A 22 ILGPRGLTAKQLEAE 36 (140) T ss_dssp HTTTTHHHHHHHHHH T ss_pred EECCCCCHHHHHHHH T ss_conf 888997279999998 No 15 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Probab=33.27 E-value=6.7 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=16.8 Q ss_pred HHHHHHCCCEEEEEECCCC-CEEE Q ss_conf 9999978957999756985-3179 Q gi|254780613|r 402 KIEEVLEVPVALLSIGPER-ENTL 424 (432) Q Consensus 402 ~IE~~~gvpI~~Is~GP~R-~~~I 424 (432) -+-...+.||.++|+|+.- ++.. T Consensus 260 ~~~~~~~lpi~~it~Gq~vpdDl~ 283 (296) T 2px0_A 260 NILAESKIGVGFMTNGQNVPEDIQ 283 (296) T ss_dssp HHHHTCSCCCSEECCSSCTTTSCB T ss_pred HHHHHHCCCEEEEECCCCCHHHHH T ss_conf 999998949799968999710175 No 16 >1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Probab=32.96 E-value=17 Score=15.13 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=12.9 Q ss_pred EEEECCEEEEEEECCCC---EECCCCCEEEC Q ss_conf 59989899998103242---03598825977 Q gi|254780613|r 42 TLKVNDIVYKLSLLPSG---VVRPDKMSIIG 69 (432) Q Consensus 42 TVv~~~~~~~~hllPSG---~~~p~~~~~ig 69 (432) +|+-.+..++.=+|||| .++++|...|| T Consensus 103 ~ii~k~~~~~~vkLpSg~~r~i~~~c~AtIG 133 (137) T 1rl2_A 103 QVLGKEGKYVIVRLASGEVRMILGKCRATVG 133 (137) T ss_dssp EEEEEETTEEEEECTTSCEEEEETTSEEEES T ss_pred EEEEECCCEEEEECCCCCEEEECCCCEEEEE T ss_conf 9999719999998899797899975809998 No 17 >3db7_A Putative calcium-regulated periplasmic protein; NP_809836.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} PDB: 3due_A* Probab=32.37 E-value=21 Score=14.50 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 885499999999999997895799975 Q gi|254780613|r 390 ADLPIQARNYIRKIEEVLEVPVALLSI 416 (432) Q Consensus 390 ~~LP~~a~~yi~~IE~~~gvpI~~Is~ 416 (432) ..||+..++||.. ++-+..|.=|.- T Consensus 75 ~~lP~~V~~~i~~--~yp~~~I~~ie~ 99 (127) T 3db7_A 75 AIIPAAIQKYVTT--NYPDAKVLKIER 99 (127) T ss_dssp GGSCHHHHHHHHH--HCTTCCEEEEEE T ss_pred HHCCHHHHHHHHH--HCCCCEEEEEEE T ss_conf 8878999999997--789984999996 No 18 >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Probab=30.66 E-value=22 Score=14.44 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 549999999999999789579997569853 Q gi|254780613|r 392 LPIQARNYIRKIEEVLEVPVALLSIGPERE 421 (432) Q Consensus 392 LP~~a~~yi~~IE~~~gvpI~~Is~GP~R~ 421 (432) +|..+ ..++.|-+.++++--++|..-=|+ T Consensus 274 i~~g~-~il~~il~~~~~~~i~vs~~gLre 302 (315) T 1t6c_A 274 ILAGI-GIFLKTLEIFEKDCLIVSDWGLRE 302 (315) T ss_dssp HHHHH-HHHHHHHHHHTCSEEEEESCCHHH T ss_pred HHHHH-HHHHHHHHHHCCCEEEECCCHHHH T ss_conf 99999-999999997193979999963899 No 19 >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Probab=29.62 E-value=23 Score=14.20 Aligned_cols=30 Identities=7% Similarity=0.043 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 8854999999999999978957999756985 Q gi|254780613|r 390 ADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 (432) Q Consensus 390 ~~LP~~a~~yi~~IE~~~gvpI~~Is~GP~R 420 (432) +-+|..+. -+..|-+.++++--++|..-=| T Consensus 271 d~i~~g~~-Il~~i~~~~~~~~i~vs~~glR 300 (315) T 3mdq_A 271 DMVVVAIC-LIEHVLKLVSTNAITVSTYSLK 300 (315) T ss_dssp HHHHHHHH-HHHHHHHHSCCSEEEEESCCHH T ss_pred HHHHHHHH-HHHHHHHHCCCCEEEECCCHHH T ss_conf 98999999-9999999729298999986289 No 20 >1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, ribose, enzyme/product complex; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Probab=27.38 E-value=26 Score=13.94 Aligned_cols=14 Identities=14% Similarity=0.098 Sum_probs=9.3 Q ss_pred CCC--CCHHHHHHHHH Q ss_conf 665--47799889998 Q gi|254780613|r 309 CGW--LDLASVRRSVI 322 (432) Q Consensus 309 ~GW--lDlv~lkya~~ 322 (432) -+| .|.+++-+++. T Consensus 246 ~~~~l~D~lA~a~~~~ 261 (322) T 1yoe_A 246 VGAPLHDPCTIAWLLK 261 (322) T ss_dssp SSEECCTHHHHHHHHC T ss_pred CCCCCCCHHHHHHHCC T ss_conf 8986778777277618 No 21 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=26.99 E-value=26 Score=13.89 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=8.4 Q ss_pred HCCCCCCEECCCCC Q ss_conf 74874000010022 Q gi|254780613|r 323 INGVKGIALTKLDV 336 (432) Q Consensus 323 ing~~~l~lTKlDv 336 (432) .-+++++++||+|- T Consensus 236 ~~~i~gvIlTKlD~ 249 (425) T 2ffh_A 236 KVGVTGLVLTKLDG 249 (425) T ss_dssp HTCCCEEEEESGGG T ss_pred HCCCCCEEEECCCC T ss_conf 46998547632467 No 22 >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Probab=26.68 E-value=22 Score=14.34 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.9 Q ss_pred CCCCEEECCCCC Q ss_conf 653101013687 Q gi|254780613|r 225 AQGFLLDNDHGT 236 (432) Q Consensus 225 AQG~lLDid~Gt 236 (432) ++++..|+=-|. T Consensus 146 ~~~lv~DIGGGS 157 (343) T 3cer_A 146 APYLVVDLGGGS 157 (343) T ss_dssp SSEEEEEECSSC T ss_pred CCEEEEECCCCC T ss_conf 771899818984 No 23 >2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus} Probab=26.06 E-value=18 Score=15.05 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=17.7 Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCCCC Q ss_conf 213566842225343078877864556766 Q gi|254780613|r 280 FPTELKNQTGDFLKEVGKEFGTVTNRQRRC 309 (432) Q Consensus 280 FPTEl~~~~~~~lr~~g~E~GttTgR~RR~ 309 (432) |.+||..+.+..|+- -|-+||||. T Consensus 18 ~isELPs~~g~kLqH------~tKgRPrr~ 41 (85) T 2kz7_C 18 LISELPSEEGRRLEH------FTKLRPKRN 41 (85) T ss_dssp CCSSCTTCCCCCSCC------CSCSSSCCC T ss_pred CEEECCCCCCCCCEE------HHCCCCCCC T ss_conf 000177766642200------112687877 No 24 >3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae} Probab=25.11 E-value=28 Score=13.66 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=8.9 Q ss_pred CCEEEEECCCCC-EEEC Q ss_conf 787999866531-0101 Q gi|254780613|r 217 GAHILFEGAQGF-LLDN 232 (432) Q Consensus 217 g~~ILfEGAQG~-lLDi 232 (432) ..+|++|...-+ .||+ T Consensus 41 p~~ivyEde~~~afld~ 57 (161) T 3lb5_A 41 PSVRVYEDDDVIAFMDI 57 (161) T ss_dssp CCCEEEECSSEEEEECS T ss_pred CCCEEEECCCEEEEECC T ss_conf 88879879979999788 No 25 >1ryl_A Hypothetical protein YFBM; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Escherichia coli} SCOP: d.276.1.1 Probab=23.31 E-value=30 Score=13.43 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=23.1 Q ss_pred CHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEE Q ss_conf 889999998888874301020249999988400787999 Q gi|254780613|r 184 LYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILF 222 (432) Q Consensus 184 ~~~~~~~~~~~~~~~l~~~v~d~~~~l~~a~~~g~~ILf 222 (432) ..++..++++.+.+.|+ .+..++.++|..||| T Consensus 132 ~~ee~~e~l~~~f~~L~-------~Fy~~Aa~~~~~vl~ 163 (167) T 1ryl_A 132 LEGQLFASIMLDMEKLI-------SAYRRMLRQGNHALT 163 (167) T ss_dssp GHHHHHHHHHHHHHHHH-------HHHHHHHHTTCEEEE T ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHCCCEEEE T ss_conf 04789999999999999-------999999987992899 No 26 >1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 1p9p_A* Probab=22.82 E-value=31 Score=13.37 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=25.0 Q ss_pred ECCCEEECHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCC Q ss_conf 7793896799999999999982898881110440332013 Q gi|254780613|r 68 IGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLI 107 (432) Q Consensus 68 ig~GvVidp~~L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii 107 (432) =|+|||+-|+.+.+-++.+++..-.. ..-++.|++-... T Consensus 76 GG~GMVm~~ePl~~ai~~~~~~~~~~-~~VI~lSP~Gk~f 114 (274) T 1ual_A 76 GGPGMLMMVQPLRDAIHTAKAAAGEG-AKVIYLSPQGRKL 114 (274) T ss_dssp CCSCCEECHHHHHHHHHHHHHHHCTT-CEEEEEEEEEEEC T ss_pred CCCCCEEECHHHHHHHHHHHHCCCCC-CEEEEECCCCHHH T ss_conf 99852664488899999977415887-4399878750766 No 27 >1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Probab=22.62 E-value=31 Score=13.34 Aligned_cols=61 Identities=10% Similarity=-0.065 Sum_probs=35.4 Q ss_pred CEEECCCEEECHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 2597793896799999999999982898881110440332013700078759988762013465676310 Q gi|254780613|r 65 MSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQR 134 (432) Q Consensus 65 ~~~ig~GvVidp~~L~~Ei~~l~~~Gv~~~~~rL~Is~ra~ii~P~H~~~D~~~E~~rg~~~~~iGTTgr 134 (432) +.==|+|||+-|+.+.+-++.+++..-. ...++.|++-...+ .+.+.|.++.+ .-+=-||| T Consensus 56 PyGGGpGMVm~~epl~~ai~~~~~~~~~--~~vI~lSP~G~~~~-----Q~~a~eLs~~~--~liliCGR 116 (257) T 1oy5_A 56 PYGGLPGMVLKPEPIYEAYDYVVENYGK--PFVLITEPWGEKLN-----QKLVNELSKKE--RIMIICGR 116 (257) T ss_dssp BSSCCSSCEECHHHHHHHHHHHHHHHCC--CEEEEECTTBCCCC-----HHHHHHHHTCS--EEEEEECB T ss_pred CCCCCCCEEEEEHHHHHHHHHHHHCCCC--CEEEEECCCCCCHH-----HHHHHHHHCCC--CEEEEECC T ss_conf 5589995088506999999998750699--74997275310123-----78778762599--77999646 No 28 >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Probab=21.88 E-value=32 Score=13.25 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHCCCEEEE Q ss_conf 4999999999999978957999 Q gi|254780613|r 393 PIQARNYIRKIEEVLEVPVALL 414 (432) Q Consensus 393 P~~a~~yi~~IE~~~gvpI~~I 414 (432) .+.+++-.+.+++.+|.++.++ T Consensus 485 ~~~~~~r~~~l~~~~g~~~~~~ 506 (508) T 3hi0_A 485 GERLDGRLQQLAKLTGKRLAFV 506 (508) T ss_dssp CHHHHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999999999999969984899 No 29 >1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5 Probab=21.03 E-value=0.52 Score=25.63 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=17.3 Q ss_pred CCHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 101356777666--5456778875098999999999999988887 Q gi|254780613|r 133 QRGIGPAYEDRV--GRRAIRVMDLTDVEHISKKIEQLLLHHNALR 175 (432) Q Consensus 133 grGIGpaY~Dk~--~R~giR~~DL~~~~~l~~kl~~~~~~~~~~~ 175 (432) +-|-=|.|.|+. +|+-+ ++ +++.+++-+...+.....+. T Consensus 58 ~IGAHPsypD~~gFGRr~~---~~-s~~el~~~i~~Qi~al~~~a 98 (255) T 1v6t_A 58 QVGAHPGYPDLMGFGRRYM---KL-TPEEARNYILYQVGALYAFA 98 (255) T ss_dssp EEEEECCCSCTTTTTCSCC---CC-CHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCC---CC-CHHHHHHHHHHHHHHHHHHH T ss_conf 7826899776579999989---99-98999999999999999999 Done!