RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] (432 letters) >gnl|CDD|144347 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase. Length = 420 Score = 593 bits (1532), Expect = e-170 Identities = 236/423 (55%), Positives = 301/423 (71%), Gaps = 4/423 (0%) Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62 +VVVG QWGDEGKGKIVD L+E+ADV+VRFQGGNNAGHT+ V+ YKL LLPSG++ P Sbjct: 1 VIVVVGAQWGDEGKGKIVDLLAEDADVVVRFQGGNNAGHTVVVDGKKYKLHLLPSGILNP 60 Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122 +++IG+ VVVDP A + EIE L +G+ V + L I++ A LIL HR LD LRE A Sbjct: 61 GVINVIGNGVVVDPEALLEEIEELEKKGVDV-RDRLFISDRAHLILPYHRALDRLREEAR 119 Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNA-LRRSFGEK 181 IGTT RGIGPAY D+V RR IRV DL D E + +K+EQLL NA L + +G + Sbjct: 120 G--KGKIGTTGRGIGPAYADKVARRGIRVGDLLDEEVLREKLEQLLEEKNAILEKLYGAE 177 Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 + + ILEE + E++ P++ LL R ++G +LFEGAQG LLD DHGTYP+VT Sbjct: 178 PLDVEEILEEYLEYAERLRPYITDTSELLNRALKEGKKVLFEGAQGTLLDIDHGTYPYVT 237 Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301 SSNT + A GSGI P + +VLGVVKAYTTRVG GPFPTEL ++ G+ L+E G EFGT Sbjct: 238 SSNTTAGGACTGSGIGPRKIDHVLGVVKAYTTRVGEGPFPTELFDELGEKLREKGHEFGT 297 Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPD 361 T R RRCGWLDL ++R + INGV +ALTKLDVLDGLDE+K+CV YR DG+E+D+ P Sbjct: 298 TTGRPRRCGWLDLVALRYAARINGVTSLALTKLDVLDGLDEIKVCVAYRYDGKEIDYFPA 357 Query: 362 DSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPERE 421 + EPVY L GWK+ G+R F DLP A+ YI++IEE++ VPV+L+S+GP+RE Sbjct: 358 SLEDLEKVEPVYETLPGWKEDITGVRSFEDLPENAKKYIKRIEELVGVPVSLISVGPDRE 417 Query: 422 NTL 424 T+ Sbjct: 418 QTI 420 >gnl|CDD|30453 COG0104, PurA, Adenylosuccinate synthase [Nucleotide transport and metabolism]. Length = 430 Score = 574 bits (1482), Expect = e-164 Identities = 231/432 (53%), Positives = 304/432 (70%), Gaps = 3/432 (0%) Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60 M NVVVVG QWGDEGKGKIVD+L++ ADV+VR+QGG+NAGHT+ VN YKL L+PSG++ Sbjct: 1 MMNVVVVGAQWGDEGKGKIVDYLADRADVVVRYQGGHNAGHTVVVNGEKYKLHLIPSGIL 60 Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120 RP +IG+ VVVDP + EIE L +G+ V + LRI++ A LIL H +LD RE Sbjct: 61 RPGATLVIGNGVVVDPEVLLKEIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREK 120 Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNA-LRRSFG 179 AL IGTT RGIGPAYED+V RR IRV DL D E + +K+E+LL + N L + +G Sbjct: 121 ALG--KKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYG 178 Query: 180 EKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPF 239 + V ++ IL+E E++ P++ + LL G +LFEGAQG LLD DHGTYP+ Sbjct: 179 AEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLLDIDHGTYPY 238 Query: 240 VTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEF 299 VTSSNT + + GSG+ P + YV+GV KAYTTRVG GPFPTEL ++ G+ L+EVG E+ Sbjct: 239 VTSSNTTAGGVATGSGVGPTKIDYVIGVFKAYTTRVGEGPFPTELFDEVGEKLREVGHEY 298 Query: 300 GTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFL 359 GT T R RRCGW D +R +V ING+ G+A+TKLDVLDGLDE+KICV Y +DG+ +D+ Sbjct: 299 GTTTGRPRRCGWFDAVLLRYAVRINGITGLAITKLDVLDGLDEIKICVAYEIDGKRIDYF 358 Query: 360 PDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPE 419 P D R EP+Y L GW + T G++ + DLP AR YI++IEE++ VPV ++S GPE Sbjct: 359 PADLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIEELVGVPVTIISTGPE 418 Query: 420 RENTLIMSNPFE 431 RE+T+I+ +PF Sbjct: 419 REDTIILRDPFA 430 >gnl|CDD|73337 cd03108, AdSS, Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.. Length = 363 Score = 493 bits (1272), Expect = e-140 Identities = 207/416 (49%), Positives = 260/416 (62%), Gaps = 53/416 (12%) Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62 VVVG QWGDEGKGKIVD L+E AD++VRFQGGNNAGHT+ VN +KL LLPSG++ P Sbjct: 1 VTVVVGAQWGDEGKGKIVDLLAERADIVVRFQGGNNAGHTVVVNGKKFKLHLLPSGILNP 60 Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122 +IG+ VV+DP A EI+ L +G L I++ A L+ H LD LRE A Sbjct: 61 GVTCVIGNGVVIDPPALFEEIDELEKKGG-DVTGRLFISDRAHLVFPYHILLDGLREEAR 119 Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEKE 182 IGTT+RGIGPAYED+ RR IRV DL I++ I+ Sbjct: 120 G--KKKIGTTKRGIGPAYEDKAARRGIRVGDLDTSYLINEAIQA---------------- 161 Query: 183 VLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVTS 242 G +LFEGAQG LLD D GTYPFVTS Sbjct: 162 ----------------------------------GKKVLFEGAQGTLLDIDFGTYPFVTS 187 Query: 243 SNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTV 302 SNT + A G GI P +G V+GVVKAYTTRVG GPFPTEL ++TGD L+E G EFGT Sbjct: 188 SNTTAGGACTGLGIPPRKIGRVIGVVKAYTTRVGSGPFPTELFDETGDKLREAGHEFGTT 247 Query: 303 TNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDD 362 T R RRCGWLDL +++ +V INGV +ALTKLDVLDGLDE+K+CV Y +DG+E+D+ P D Sbjct: 248 TGRPRRCGWLDLVALKYAVRINGVTELALTKLDVLDGLDEIKVCVAYELDGKEIDYFPAD 307 Query: 363 SIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGP 418 + EPVY L GWK+ +G+R + DLP A+NYI++IEE++ VP++++S+GP Sbjct: 308 LEDLEKVEPVYETLPGWKEDISGVRSYDDLPENAQNYIKRIEELVGVPISIISVGP 363 >gnl|CDD|36569 KOG1355, KOG1355, KOG1355, Adenylosuccinate synthase [Nucleotide transport and metabolism]. Length = 455 Score = 370 bits (951), Expect = e-103 Identities = 177/424 (41%), Positives = 251/424 (59%), Gaps = 8/424 (1%) Query: 5 VVVGLQWGDEGKGKIVDWLSENA--DVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62 VV+G QWGDEGKGK+VD L+++A D++ R QGGNNAGHT+ V+ + Y LLPSG++ P Sbjct: 33 VVLGAQWGDEGKGKVVDLLAQDAKVDIVARCQGGNNAGHTVVVDGVEYDFHLLPSGIINP 92 Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122 + + IG+ VV+ E+E L +G+ L I++ A L+ H+ +D L+E L Sbjct: 93 NCTNFIGNGVVIHLPGLFEELEKLEAKGL-KWEKRLIISDRAHLVFDFHQAVDGLQEQEL 151 Query: 123 SP-CGAHIGTTQRGIGPAYEDRVGRRAIRVMDL-TDVEHISKKIEQLLLHHNALRRSFGE 180 G +IGTT++GIGPAY + R +RV DL +D + S++ + L + + F Sbjct: 152 QEQSGKNIGTTKKGIGPAYSSKAARSGLRVCDLVSDFDEFSERFKVLAEQY---KSRFPT 208 Query: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240 E+ + L EK+ P + + IL EGA +LD D GTYPFV Sbjct: 209 LEIDIEGELARYKGYAEKLKPMVRDTVYFMYEALHGKKKILVEGANAAMLDIDFGTYPFV 268 Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300 TSSN G GI P ++G V+GVVKAYTTRVG GPFPTE N+ G+ L+ G+EFG Sbjct: 269 TSSNCTVGGVCTGLGIPPQNIGEVIGVVKAYTTRVGIGPFPTEQLNEIGELLQTRGREFG 328 Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP 360 T R+RRCGWLDL ++ S +ING +ALTKLD+LD E+K+ V Y+++G+ + P Sbjct: 329 VTTGRKRRCGWLDLVLLKYSHMINGFTALALTKLDILDTFPEIKVGVAYKLNGKIIPHFP 388 Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 + + E Y L GWK T G+R F DLP A+ Y+R IE+ + VPV + +G R Sbjct: 389 ANQEVLGKVEVEYKTLPGWKTDTTGVRNFKDLPENAQQYVRFIEDFVGVPVKWIGVGKGR 448 Query: 421 ENTL 424 E+ + Sbjct: 449 ESMI 452 >gnl|CDD|38827 KOG3621, KOG3621, KOG3621, WD40 repeat-containing protein [General function prediction only]. Length = 726 Score = 30.4 bits (68), Expect = 0.96 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 77 HAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGI 136 A ISE E A + L I+ + L LRE A +PCG H+G GI Sbjct: 577 LAHISEEELHARDDVTPQITLLLISCYPT-HLEEASIQTPLREDASNPCGYHVGEAVDGI 635 Query: 137 GPA 139 Sbjct: 636 RSF 638 >gnl|CDD|145001 pfam01628, HrcA, HrcA protein C terminal domain. HrcA is found to negatively regulate the transcription of heat shock genes. HrcA contains an amino terminal helix-turn-helix domain, however this corresponds to the carboxy terminal domain. Length = 224 Score = 27.9 bits (63), Expect = 5.0 Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 376 LEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPERENTLIMS 427 L G S ++ A+LP + + Y ++EVL++ A+LS E E L + Sbjct: 83 LVGLTLSEIREKLRAELPQELQEYDELLDEVLDLLEAVLSFLEEDEERLYVG 134 >gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 Score = 27.0 bits (60), Expect = 9.2 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 20 VDWLSENADVIVRFQGGNNAGHTLKVNDI-VYKLSL 54 +DWLS N +VI F GN K I + L+ Sbjct: 115 LDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAY 150 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.139 0.408 Gapped Lambda K H 0.267 0.0831 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,306,498 Number of extensions: 290392 Number of successful extensions: 684 Number of sequences better than 10.0: 1 Number of HSP's gapped: 674 Number of HSP's successfully gapped: 14 Length of query: 432 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 335 Effective length of database: 4,167,664 Effective search space: 1396167440 Effective search space used: 1396167440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.3 bits)