RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(432 letters)
>gnl|CDD|144347 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 593 bits (1532), Expect = e-170
Identities = 236/423 (55%), Positives = 301/423 (71%), Gaps = 4/423 (0%)
Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62
+VVVG QWGDEGKGKIVD L+E+ADV+VRFQGGNNAGHT+ V+ YKL LLPSG++ P
Sbjct: 1 VIVVVGAQWGDEGKGKIVDLLAEDADVVVRFQGGNNAGHTVVVDGKKYKLHLLPSGILNP 60
Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122
+++IG+ VVVDP A + EIE L +G+ V + L I++ A LIL HR LD LRE A
Sbjct: 61 GVINVIGNGVVVDPEALLEEIEELEKKGVDV-RDRLFISDRAHLILPYHRALDRLREEAR 119
Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNA-LRRSFGEK 181
IGTT RGIGPAY D+V RR IRV DL D E + +K+EQLL NA L + +G +
Sbjct: 120 G--KGKIGTTGRGIGPAYADKVARRGIRVGDLLDEEVLREKLEQLLEEKNAILEKLYGAE 177
Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241
+ + ILEE + E++ P++ LL R ++G +LFEGAQG LLD DHGTYP+VT
Sbjct: 178 PLDVEEILEEYLEYAERLRPYITDTSELLNRALKEGKKVLFEGAQGTLLDIDHGTYPYVT 237
Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301
SSNT + A GSGI P + +VLGVVKAYTTRVG GPFPTEL ++ G+ L+E G EFGT
Sbjct: 238 SSNTTAGGACTGSGIGPRKIDHVLGVVKAYTTRVGEGPFPTELFDELGEKLREKGHEFGT 297
Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPD 361
T R RRCGWLDL ++R + INGV +ALTKLDVLDGLDE+K+CV YR DG+E+D+ P
Sbjct: 298 TTGRPRRCGWLDLVALRYAARINGVTSLALTKLDVLDGLDEIKVCVAYRYDGKEIDYFPA 357
Query: 362 DSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPERE 421
+ EPVY L GWK+ G+R F DLP A+ YI++IEE++ VPV+L+S+GP+RE
Sbjct: 358 SLEDLEKVEPVYETLPGWKEDITGVRSFEDLPENAKKYIKRIEELVGVPVSLISVGPDRE 417
Query: 422 NTL 424
T+
Sbjct: 418 QTI 420
>gnl|CDD|30453 COG0104, PurA, Adenylosuccinate synthase [Nucleotide transport and
metabolism].
Length = 430
Score = 574 bits (1482), Expect = e-164
Identities = 231/432 (53%), Positives = 304/432 (70%), Gaps = 3/432 (0%)
Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60
M NVVVVG QWGDEGKGKIVD+L++ ADV+VR+QGG+NAGHT+ VN YKL L+PSG++
Sbjct: 1 MMNVVVVGAQWGDEGKGKIVDYLADRADVVVRYQGGHNAGHTVVVNGEKYKLHLIPSGIL 60
Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120
RP +IG+ VVVDP + EIE L +G+ V + LRI++ A LIL H +LD RE
Sbjct: 61 RPGATLVIGNGVVVDPEVLLKEIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREK 120
Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNA-LRRSFG 179
AL IGTT RGIGPAYED+V RR IRV DL D E + +K+E+LL + N L + +G
Sbjct: 121 ALG--KKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYG 178
Query: 180 EKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPF 239
+ V ++ IL+E E++ P++ + LL G +LFEGAQG LLD DHGTYP+
Sbjct: 179 AEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLLDIDHGTYPY 238
Query: 240 VTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEF 299
VTSSNT + + GSG+ P + YV+GV KAYTTRVG GPFPTEL ++ G+ L+EVG E+
Sbjct: 239 VTSSNTTAGGVATGSGVGPTKIDYVIGVFKAYTTRVGEGPFPTELFDEVGEKLREVGHEY 298
Query: 300 GTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFL 359
GT T R RRCGW D +R +V ING+ G+A+TKLDVLDGLDE+KICV Y +DG+ +D+
Sbjct: 299 GTTTGRPRRCGWFDAVLLRYAVRINGITGLAITKLDVLDGLDEIKICVAYEIDGKRIDYF 358
Query: 360 PDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPE 419
P D R EP+Y L GW + T G++ + DLP AR YI++IEE++ VPV ++S GPE
Sbjct: 359 PADLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIEELVGVPVTIISTGPE 418
Query: 420 RENTLIMSNPFE 431
RE+T+I+ +PF
Sbjct: 419 REDTIILRDPFA 430
>gnl|CDD|73337 cd03108, AdSS, Adenylosuccinate synthetase (AdSS) catalyzes the
first step in the de novo biosynthesis of AMP. IMP and
L-aspartate are conjugated in a two-step reaction
accompanied by the hydrolysis of GTP to GDP in the
presence of Mg2+. In the first step, the r-phosphate
group of GTP is transferred to the 6-oxygen atom of IMP.
An aspartate then displaces this 6-phosphate group to
form the product adenylosuccinate. Because of its
critical role in purine biosynthesis, AdSS is a target
of antibiotics, herbicides and antitumor drugs..
Length = 363
Score = 493 bits (1272), Expect = e-140
Identities = 207/416 (49%), Positives = 260/416 (62%), Gaps = 53/416 (12%)
Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62
VVVG QWGDEGKGKIVD L+E AD++VRFQGGNNAGHT+ VN +KL LLPSG++ P
Sbjct: 1 VTVVVGAQWGDEGKGKIVDLLAERADIVVRFQGGNNAGHTVVVNGKKFKLHLLPSGILNP 60
Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122
+IG+ VV+DP A EI+ L +G L I++ A L+ H LD LRE A
Sbjct: 61 GVTCVIGNGVVIDPPALFEEIDELEKKGG-DVTGRLFISDRAHLVFPYHILLDGLREEAR 119
Query: 123 SPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEKE 182
IGTT+RGIGPAYED+ RR IRV DL I++ I+
Sbjct: 120 G--KKKIGTTKRGIGPAYEDKAARRGIRVGDLDTSYLINEAIQA---------------- 161
Query: 183 VLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVTS 242
G +LFEGAQG LLD D GTYPFVTS
Sbjct: 162 ----------------------------------GKKVLFEGAQGTLLDIDFGTYPFVTS 187
Query: 243 SNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGTV 302
SNT + A G GI P +G V+GVVKAYTTRVG GPFPTEL ++TGD L+E G EFGT
Sbjct: 188 SNTTAGGACTGLGIPPRKIGRVIGVVKAYTTRVGSGPFPTELFDETGDKLREAGHEFGTT 247
Query: 303 TNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLPDD 362
T R RRCGWLDL +++ +V INGV +ALTKLDVLDGLDE+K+CV Y +DG+E+D+ P D
Sbjct: 248 TGRPRRCGWLDLVALKYAVRINGVTELALTKLDVLDGLDEIKVCVAYELDGKEIDYFPAD 307
Query: 363 SIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGP 418
+ EPVY L GWK+ +G+R + DLP A+NYI++IEE++ VP++++S+GP
Sbjct: 308 LEDLEKVEPVYETLPGWKEDISGVRSYDDLPENAQNYIKRIEELVGVPISIISVGP 363
>gnl|CDD|36569 KOG1355, KOG1355, KOG1355, Adenylosuccinate synthase [Nucleotide
transport and metabolism].
Length = 455
Score = 370 bits (951), Expect = e-103
Identities = 177/424 (41%), Positives = 251/424 (59%), Gaps = 8/424 (1%)
Query: 5 VVVGLQWGDEGKGKIVDWLSENA--DVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62
VV+G QWGDEGKGK+VD L+++A D++ R QGGNNAGHT+ V+ + Y LLPSG++ P
Sbjct: 33 VVLGAQWGDEGKGKVVDLLAQDAKVDIVARCQGGNNAGHTVVVDGVEYDFHLLPSGIINP 92
Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGAL 122
+ + IG+ VV+ E+E L +G+ L I++ A L+ H+ +D L+E L
Sbjct: 93 NCTNFIGNGVVIHLPGLFEELEKLEAKGL-KWEKRLIISDRAHLVFDFHQAVDGLQEQEL 151
Query: 123 SP-CGAHIGTTQRGIGPAYEDRVGRRAIRVMDL-TDVEHISKKIEQLLLHHNALRRSFGE 180
G +IGTT++GIGPAY + R +RV DL +D + S++ + L + + F
Sbjct: 152 QEQSGKNIGTTKKGIGPAYSSKAARSGLRVCDLVSDFDEFSERFKVLAEQY---KSRFPT 208
Query: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240
E+ + L EK+ P + + IL EGA +LD D GTYPFV
Sbjct: 209 LEIDIEGELARYKGYAEKLKPMVRDTVYFMYEALHGKKKILVEGANAAMLDIDFGTYPFV 268
Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300
TSSN G GI P ++G V+GVVKAYTTRVG GPFPTE N+ G+ L+ G+EFG
Sbjct: 269 TSSNCTVGGVCTGLGIPPQNIGEVIGVVKAYTTRVGIGPFPTEQLNEIGELLQTRGREFG 328
Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP 360
T R+RRCGWLDL ++ S +ING +ALTKLD+LD E+K+ V Y+++G+ + P
Sbjct: 329 VTTGRKRRCGWLDLVLLKYSHMINGFTALALTKLDILDTFPEIKVGVAYKLNGKIIPHFP 388
Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420
+ + E Y L GWK T G+R F DLP A+ Y+R IE+ + VPV + +G R
Sbjct: 389 ANQEVLGKVEVEYKTLPGWKTDTTGVRNFKDLPENAQQYVRFIEDFVGVPVKWIGVGKGR 448
Query: 421 ENTL 424
E+ +
Sbjct: 449 ESMI 452
>gnl|CDD|38827 KOG3621, KOG3621, KOG3621, WD40 repeat-containing protein [General
function prediction only].
Length = 726
Score = 30.4 bits (68), Expect = 0.96
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 77 HAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGTTQRGI 136
A ISE E A + L I+ + L LRE A +PCG H+G GI
Sbjct: 577 LAHISEEELHARDDVTPQITLLLISCYPT-HLEEASIQTPLREDASNPCGYHVGEAVDGI 635
Query: 137 GPA 139
Sbjct: 636 RSF 638
>gnl|CDD|145001 pfam01628, HrcA, HrcA protein C terminal domain. HrcA is found to
negatively regulate the transcription of heat shock
genes. HrcA contains an amino terminal helix-turn-helix
domain, however this corresponds to the carboxy terminal
domain.
Length = 224
Score = 27.9 bits (63), Expect = 5.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 376 LEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPERENTLIMS 427
L G S ++ A+LP + + Y ++EVL++ A+LS E E L +
Sbjct: 83 LVGLTLSEIREKLRAELPQELQEYDELLDEVLDLLEAVLSFLEEDEERLYVG 134
>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain,
uncharacterized subfamily 2. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 27.0 bits (60), Expect = 9.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 20 VDWLSENADVIVRFQGGNNAGHTLKVNDI-VYKLSL 54
+DWLS N +VI F GN K I + L+
Sbjct: 115 LDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAY 150
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.139 0.408
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,306,498
Number of extensions: 290392
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 14
Length of query: 432
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 335
Effective length of database: 4,167,664
Effective search space: 1396167440
Effective search space used: 1396167440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)