RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] (432 letters) >1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} (A:) Length = 442 Score = 534 bits (1377), Expect = e-153 Identities = 165/436 (37%), Positives = 236/436 (54%), Gaps = 11/436 (2%) Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60 V ++G QWGDEGKGKI+D LSE +D+ RF GG NAGHT+ VND Y L LLP GV+ Sbjct: 14 GNVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVL 73 Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120 + +S++G+ +V+ + + EIES+ + + L ++N A ++ IH+ +D ++E Sbjct: 74 YDNNISVLGNGMVIHVKSLMEEIESVGGKLLD----RLYLSNKAHILFDIHQIIDSIQET 129 Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGE 180 G IGTT+RGIGP Y + R IR+ L + E+ +L+ H L + Sbjct: 130 KKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDL---YNI 186 Query: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240 E + L K+ + + S + +L EGA +LD D GTYP+V Sbjct: 187 TEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYV 246 Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300 TSS T G GI L V+GVVK+Y TRVG GPF TEL N G +L+E G E+G Sbjct: 247 TSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYG 306 Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMD----GREV 356 T T R RRCGWLD+ + IN + I LTKLDVL GL+E+ +CV ++ E Sbjct: 307 TTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEK 366 Query: 357 DFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSI 416 P + +EPVY GWK+ + F +LP A+ YI IE+ L+ P+ + + Sbjct: 367 GCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGV 426 Query: 417 GPERENTLIMSNPFED 432 GP R+N ++ N + Sbjct: 427 GPNRKNMIVKKNFNLN 442 >2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A* (A:) Length = 459 Score = 524 bits (1350), Expect = e-149 Identities = 170/429 (39%), Positives = 252/429 (58%), Gaps = 8/429 (1%) Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRP 62 VV+G QWGDEGKGK+VD L+++AD++ R QGGNNAGHT+ V+ + Y LLPSG++ P Sbjct: 33 VTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINP 92 Query: 63 DKMSIIGSSVVVDPHAFISEIESLAHQGICV--TPNNLRIANNASLILSIHRDLDMLREG 120 + + IG+ VV+ E E +G + L I++ A ++ H+ D ++E Sbjct: 93 NVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQ 152 Query: 121 ALS-PCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLT-DVEHISKKIEQLLLHHNALRRSF 178 G ++GTT++GIGP Y + R +R+ DL D + S++ + L + ++ + Sbjct: 153 QRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKSI---Y 209 Query: 179 GEKEVLYKTILEELMYAREKILPFM-DVIWSLLERESRKGAHILFEGAQGFLLDNDHGTY 237 E+ + L++L EKI P + D ++ L E IL EGA LLD D GTY Sbjct: 210 PTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDFGTY 269 Query: 238 PFVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGK 297 PFVTSSN G G+ P ++G V GVVKAYTTRVG G FPTE N+ G+ L+ G+ Sbjct: 270 PFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGR 329 Query: 298 EFGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVD 357 EFG T R+RRCGWLDL ++ + +ING +ALTKLD+LD E+K+ V Y++DG + Sbjct: 330 EFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIP 389 Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417 +P + + E Y L GW + R F +LP+ A+NY+R IE+ L++PV + +G Sbjct: 390 HIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYVRFIEDELQIPVKWIGVG 449 Query: 418 PERENTLIM 426 RE+ + + Sbjct: 450 KSRESMIQL 458 >1dj2_A Adenylosuccinate synthetase; GDP; HET: GDP; 2.90A {Arabidopsis thaliana} (A:) Length = 443 Score = 519 bits (1338), Expect = e-148 Identities = 167/425 (39%), Positives = 248/425 (58%), Gaps = 5/425 (1%) Query: 3 NVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVND-IVYKLSLLPSGVVR 61 V+G QWGDEGKGK+VD L+++ D++ R QGG NAGHT+ ++ + L L+PSG++ Sbjct: 21 VSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILN 80 Query: 62 PDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGA 121 D +IG+ VVV EI+ L G+ + +++ A L+ H+++D LRE Sbjct: 81 EDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGR-ILVSDRAHLLFDFHQEVDGLRESE 139 Query: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEK 181 L+ + IGTT+RGIGPAY +V R IRV DL ++ + +K++ LL A + F Sbjct: 140 LA--KSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGFKYT 197 Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVT 241 + + +E +++ P++ + + +L EG Q +LD D GTYPFVT Sbjct: 198 PEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYPFVT 257 Query: 242 SSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFGT 301 SS+ + G GI+P +G ++GVVKAYTTRVG GPFPTE GD L+ G+EFGT Sbjct: 258 SSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGT 317 Query: 302 VTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDFLP 360 T R RRCGWLD+ +++ S ING + LTKLDVL L+E+++ V Y+ DG V P Sbjct: 318 TTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFP 377 Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 D Y +L GWK + +R ++DLP A+ Y+ +IEE++ VP+ + IGP R Sbjct: 378 GDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGR 437 Query: 421 ENTLI 425 + + Sbjct: 438 DALIY 442 >2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii OT3} (A:) Length = 339 Score = 389 bits (1001), Expect = e-109 Identities = 127/432 (29%), Positives = 192/432 (44%), Gaps = 95/432 (21%) Query: 1 MTNVVVVGLQWGDEGKGKIVDWLS--ENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSG 58 M +V+VVG QWGDEGKG IV +LS + ++I R G NAGH++ +N Y + +P+G Sbjct: 1 MPSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTG 60 Query: 59 VVRPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLR 118 ++ +IG+ V+VDP F E+E L + + + I ++I H+ LD Sbjct: 61 FMQTKARLLIGAGVLVDPEVFFHELEQLKDFNV---KDRVGIDYRCAIIEEKHKQLDRTN 117 Query: 119 EGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178 IGTT G GPA DRV R+A + D Sbjct: 118 GYLHGK----IGTTGSGCGPANADRVMRKAKQAKD------------------------- 148 Query: 179 GEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238 +++ P++ + + +G+ +L EG QGF L +GTYP Sbjct: 149 -----------------VKELEPYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYP 191 Query: 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKE 298 +VTS + ++ + GI P + V+ V K++ TRVG GPFPTE+ + D L E Sbjct: 192 YVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADRLG--LVE 249 Query: 299 FGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDF 358 +GTVT R+RR GW D R S ING +A+T LD Sbjct: 250 YGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDK---------------------- 287 Query: 359 LPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGP 418 + + G+ + LP +A+ +I +IEE + VPV L+ GP Sbjct: 288 --------------------YDKEAFGVTDYDKLPRKAKEFIEEIEERVGVPVGLIKTGP 327 Query: 419 ERENTLIMSNPF 430 E E+ + + Sbjct: 328 ELEHIIDRRDTI 339 >3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ... (A:1-71,A:217-432) Length = 287 Score = 307 bits (787), Expect = 3e-84 Identities = 116/214 (54%), Positives = 158/214 (73%), Gaps = 1/214 (0%) Query: 219 HILFEGAQGFLLDNDHGTYPFVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGG 278 I+FEGAQG LLD DHGTYP+VTSSNT + + GSG+ P + YVLG+VKAY+TRVG G Sbjct: 73 LIMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAG 132 Query: 279 PFPTELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLD 338 PFPTEL ++TG+FL++ G E+G T R RR GWLD+ +VRR+V IN + G +TKLDVLD Sbjct: 133 PFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLD 192 Query: 339 GLDELKICVGYRM-DGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQAR 397 GL E+K+CVGYRM DGREVD P + EP+Y + GW ++T G++ + LP A Sbjct: 193 GLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAAL 252 Query: 398 NYIRKIEEVLEVPVALLSIGPERENTLIMSNPFE 431 NYI+++EE+ VP+ ++S GP+R+ T+I+ +PF+ Sbjct: 253 NYIQRVEELTGVPIDIISTGPDRDETMILRDPFD 286 Score = 117 bits (295), Expect = 2e-27 Identities = 41/73 (56%), Positives = 57/73 (78%) Query: 2 TNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVR 61 NVVV+G QWGDEGKGK+VD L+E A +VR+QGG+NAGHTL +N L L+PSG++R Sbjct: 3 KNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILR 62 Query: 62 PDKMSIIGSSVVV 74 + +SIIG+ +++ Sbjct: 63 ENVISIIGNELIM 75 >3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ... (A:72-203) Length = 132 Score = 133 bits (335), Expect = 7e-32 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 72 VVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREGALSPCGAHIGT 131 VV+ P A + E+ L +G+ V L ++ LIL H LD RE A IGT Sbjct: 2 VVLAPDALMKEMTELEARGVPVRER-LLLSEACPLILPYHVALDNAREKARG--AKAIGT 58 Query: 132 TQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNA-LRRSFGEKEVLYKTILE 190 T RGIGPAYED+V RR +RV DL + E + K+++++ +HN L + E V Y+ +L+ Sbjct: 59 TGRGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVEYHNFQLVHYYKEAAVDYQKVLD 118 Query: 191 ELMYAREKILPFM 203 +++ + + + Sbjct: 119 DVLAIADILTAMV 131 >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin- beta family, alternative splicing, cytoplasm, nucleus, phosphoprotein; HET: GTP; 2.92A {Homo sapiens} (A:131-241) Length = 111 Score = 27.9 bits (62), Expect = 2.7 Identities = 6/22 (27%), Positives = 12/22 (54%) Query: 79 FISEIESLAHQGICVTPNNLRI 100 + E+++L+ QG T + I Sbjct: 5 MLIELDTLSKQGETQTELVMFI 26 >1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} (A:) Length = 213 Score = 27.1 bits (59), Expect = 5.0 Identities = 8/66 (12%), Positives = 19/66 (28%) Query: 146 RRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEKEVLYKTILEELMYAREKILPFMDV 205 + ++ D ++ L H L E +++L+ + + Sbjct: 17 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEE 76 Query: 206 IWSLLE 211 I L Sbjct: 77 IQQRLA 82 >3gqn_A Preneck appendage protein; coiled coil, beta helix, beta barrel, ATP binding, viral protein; HET: ATP; 2.15A {Bacillus phage PHI29} (A:467-604) Length = 138 Score = 26.8 bits (59), Expect = 5.2 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Query: 225 AQGFLLDNDHGTYP------FVTSSNTMSAQ-----ASIGSGISPGSLGYVLGVVKAYTT 273 ++GF++ + G +TSS++ ++ A + + G+ +LG + A Sbjct: 18 SEGFIMGSTSGCEASVSKSGVLTSSSSKTSSERSLIAGSSTSEAKGTYNTILGSLGAVAD 77 Query: 274 RVG 276 Sbjct: 78 EQF 80 >3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} (A:1-107,A:160-274) Length = 222 Score = 27.0 bits (59), Expect = 5.2 Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 18 KIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLP 56 K+ D I+ F G N+ ++ ++ + L+ L Sbjct: 80 KLKKEHGGEVDAILVFXGTNDYNSSVPIDKQIVLLTPLH 118 >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Bacteriophage T7} (A:241-348) Length = 108 Score = 26.5 bits (58), Expect = 7.4 Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 3/19 (15%) Query: 5 VVVGLQWGDEGK---GKIV 20 ++ GL WG +G GK++ Sbjct: 7 IIQGLVWGTKGLANEGKVI 25 >1z9t_A Hypothetical UPF0124 protein YFIH; NP_417084.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: CIT; 1.54A {Escherichia coli} PDB: 1xaf_A 1u05_A 1rw0_A (A:1-170,A:206-255) Length = 220 Score = 26.0 bits (57), Expect = 9.1 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Query: 266 GVVKAYTTRVGG---GPFPT-ELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDL 314 GV +TR+GG P+ + L GD V + NR+R +L Sbjct: 26 GVAACSSTRIGGVSLPPYDSLNLGAHCGDNPDHVEE------NRKRLFAAGNL 72 >2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functional analyses; 2.30A {Pyrococcus horikoshii OT3} (A:) Length = 207 Score = 26.2 bits (58), Expect = 9.5 Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Query: 389 FADLPIQARNYIRKIEEVLEVPVALLSIGPERENTLIMSNPFED 432 + I + Y + ++ + PV +G + LI+ + Sbjct: 92 ISKYVISEQEYXEIVSQLKDYPVINPVLGLHK---LILLGNTFE 132 >2bdd_A ACP-synthase; structural genomics, structural genomics consortium, SGC, transferase; 2.28A {Plasmodium yoelii yoelii} (A:) Length = 182 Score = 25.8 bits (56), Expect = 10.0 Identities = 10/67 (14%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 155 TDVEHISKKIEQLLLHHNALRRSFGEKEV-LYKTILEELMYAREKILPFMDVIWSLLERE 213 TD+ +++ + L + N +++ E+ ++T ++L K + + ++ Sbjct: 29 TDILCVNRIYKILEKNINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLAIYVSKKF 88 Query: 214 SRKGAHI 220 + K A + Sbjct: 89 AAKEAIL 95 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.139 0.408 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,401,170 Number of extensions: 161112 Number of successful extensions: 471 Number of sequences better than 10.0: 1 Number of HSP's gapped: 453 Number of HSP's successfully gapped: 27 Length of query: 432 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 341 Effective length of database: 1,879,794 Effective search space: 641009754 Effective search space used: 641009754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.9 bits)