RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(432 letters)
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 497 bits (1282), Expect = e-141
Identities = 165/432 (38%), Positives = 235/432 (54%), Gaps = 11/432 (2%)
Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60
V ++G QWGDEGKGKI+D LSE +D+ RF GG NAGHT+ VND Y L LLP GV+
Sbjct: 14 GNVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTISVNDKKYALHLLPCGVL 73
Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120
+ +S++G+ +V+ + + EIES+ + + + L ++N A ++ IH+ +D ++E
Sbjct: 74 YDNNISVLGNGMVIHVKSLMEEIESVGGKLL----DRLYLSNKAHILFDIHQIIDSIQET 129
Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGE 180
G IGTT+RGIGP Y + R IR+ L + E+ +L+ H L
Sbjct: 130 KKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMDLYN---I 186
Query: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240
E + L K+ + + S + +L EGA +LD D GTYP+V
Sbjct: 187 TEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFGTYPYV 246
Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300
TSS T G GI L V+GVVK+Y TRVG GPF TEL N G +L+E G E+G
Sbjct: 247 TSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYG 306
Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGR----EV 356
T T R RRCGWLD+ + IN + I LTKLDVL GL+E+ +CV ++ E
Sbjct: 307 TTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKKTGELLEK 366
Query: 357 DFLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSI 416
P + +EPVY GWK+ + F +LP A+ YI IE+ L+ P+ + +
Sbjct: 367 GCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKTPIVWIGV 426
Query: 417 GPERENTLIMSN 428
GP R+N ++ N
Sbjct: 427 GPNRKNMIVKKN 438
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 457 bits (1178), Expect = e-129
Identities = 205/433 (47%), Positives = 291/433 (67%), Gaps = 5/433 (1%)
Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60
NVVV+G QWGDEGKGK+VD L+E A +VR+QGG+NAGHTL +N L L+PSG++
Sbjct: 2 GKNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGIL 61
Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120
R + +SIIG+ VV+ P A + E+ L +G+ L ++ LIL H LD RE
Sbjct: 62 RENVISIIGNGVVLAPDALMKEMTELEARGVP-VRERLLLSEACPLILPYHVALDNAREK 120
Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFG- 179
A IGTT RGIGPAYED+V RR +RV DL + E + K+++++ +HN +
Sbjct: 121 ARG--AKAIGTTGRGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVEYHNFQLVHYYK 178
Query: 180 EKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPF 239
E V Y+ +L++++ + + + + LL+ ++G I+FEGAQG LLD DHGTYP+
Sbjct: 179 EAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPY 238
Query: 240 VTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEF 299
VTSSNT + + GSG+ P + YVLG+VKAY+TRVG GPFPTEL ++TG+FL++ G E+
Sbjct: 239 VTSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEY 298
Query: 300 GTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVDF 358
G T R RR GWLD+ +VRR+V IN + G +TKLDVLDGL E+K+CVGYRM DGREVD
Sbjct: 299 GATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDT 358
Query: 359 LPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGP 418
P + EP+Y + GW ++T G++ + LP A NYI+++EE+ VP+ ++S GP
Sbjct: 359 TPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAALNYIQRVEELTGVPIDIISTGP 418
Query: 419 ERENTLIMSNPFE 431
+R+ T+I+ +PF+
Sbjct: 419 DRDETMILRDPFD 431
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 439 bits (1131), Expect = e-124
Identities = 165/426 (38%), Positives = 243/426 (57%), Gaps = 6/426 (1%)
Query: 5 VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDK 64
VV+G QWGDEGKGK+VD L+++AD++ R QGGNNAGHT+ V+ + Y LLPSG++ P+
Sbjct: 35 VVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNV 94
Query: 65 MSIIGSSVVVDPHAFISEIESLAHQGICV--TPNNLRIANNASLILSIHRDLDMLREGAL 122
+ IG+ VV+ E E +G + L I++ A ++ H+ D ++E
Sbjct: 95 TAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQR 154
Query: 123 SPCGA-HIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGEK 181
++GTT++GIGP Y + R +R+ DL + ++L + + +
Sbjct: 155 QEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQY--KSIYPTL 212
Query: 182 EVLYKTILEELMYAREKILPFMDVIWSLLERESR-KGAHILFEGAQGFLLDNDHGTYPFV 240
E+ + L++L EKI P + L IL EGA LLD D GTYPFV
Sbjct: 213 EIDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDFGTYPFV 272
Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300
TSSN G G+ P ++G V GVVKAYTTRVG G FPTE N+ G+ L+ G+EFG
Sbjct: 273 TSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFG 332
Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP 360
T R+RRCGWLDL ++ + +ING +ALTKLD+LD E+K+ V Y++DG + +P
Sbjct: 333 VTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKLDGEIIPHIP 392
Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420
+ + E Y L GW + R F +LP+ A+NY+R IE+ L++PV + +G R
Sbjct: 393 ANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYVRFIEDELQIPVKWIGVGKSR 452
Query: 421 ENTLIM 426
E+ + +
Sbjct: 453 ESMIQL 458
>1dj2_A Adenylosuccinate synthetase; GDP; HET: GDP; 2.90A {Arabidopsis
thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 419 bits (1078), Expect = e-118
Identities = 162/428 (37%), Positives = 237/428 (55%), Gaps = 6/428 (1%)
Query: 1 MTNV-VVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVND-IVYKLSLLPSG 58
++ V V+G QWGDEGKGK+VD L+++ D++ R QGG NAGHT+ ++ + L L+PSG
Sbjct: 18 LSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSG 77
Query: 59 VVRPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLR 118
++ D +IG+ VVV EI+ L G+ L L +
Sbjct: 78 ILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRE 137
Query: 119 EGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178
+ IGTT+RGIGPAY +V R IRV DL ++ + +K++ LL A + F
Sbjct: 138 S---ELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGF 194
Query: 179 GEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238
+ + +E +++ P++ + + +L EG Q +LD D GTYP
Sbjct: 195 KYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYP 254
Query: 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKE 298
FVTSS+ + G GI+P +G ++GVVKAYTTRVG GPFPTE GD L+ G+E
Sbjct: 255 FVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQE 314
Query: 299 FGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRM-DGREVD 357
FGT T R RRCGWLD+ +++ S ING + LTKLDVL L+E+++ V Y+ DG V
Sbjct: 315 FGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVK 374
Query: 358 FLPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIG 417
P D Y +L GWK + +R ++DLP A+ Y+ +IEE++ VP+ + IG
Sbjct: 375 SFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIG 434
Query: 418 PERENTLI 425
P R+ +
Sbjct: 435 PGRDALIY 442
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved
hypothetical protein, NPPSFA; 2.50A {Pyrococcus
horikoshii OT3}
Length = 339
Score = 303 bits (778), Expect = 4e-83
Identities = 129/430 (30%), Positives = 193/430 (44%), Gaps = 95/430 (22%)
Query: 1 MTNVVVVGLQWGDEGKGKIVDWLS--ENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSG 58
M +V+VVG QWGDEGKG IV +LS + ++I R G NAGH++ +N Y + +P+G
Sbjct: 1 MPSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTG 60
Query: 59 VVRPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLR 118
++ +IG+ V+VDP F E+E L + + + I ++I H+ LD
Sbjct: 61 FMQTKARLLIGAGVLVDPEVFFHELEQLKDFNVK---DRVGIDYRCAIIEEKHKQLDR-- 115
Query: 119 EGALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178
IGTT G GPA DRV R+A + D+ ++E
Sbjct: 116 --TNGYLHGKIGTTGSGCGPANADRVMRKAKQAKDVKELE-------------------- 153
Query: 179 GEKEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYP 238
P++ + + +G+ +L EG QGF L +GTYP
Sbjct: 154 ----------------------PYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYP 191
Query: 239 FVTSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKE 298
+VTS + ++ + GI P + V+ V K++ TRVG GPFPTE+ + D L E
Sbjct: 192 YVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADRLGL--VE 249
Query: 299 FGTVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDF 358
+GTVT R+RR GW D R S ING +A+T LD D
Sbjct: 250 YGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDKYD-------------------- 289
Query: 359 LPDDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGP 418
+ G+ + LP +A+ +I +IEE + VPV L+ GP
Sbjct: 290 ----------------------KEAFGVTDYDKLPRKAKEFIEEIEERVGVPVGLIKTGP 327
Query: 419 ERENTLIMSN 428
E E+ + +
Sbjct: 328 ELEHIIDRRD 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.6 bits (118), Expect = 1e-06
Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 84/257 (32%)
Query: 207 WSLLERESRKGAHILFE-GAQGFLLDNDHGTYPFVTSSNTMSAQASIGSGISPGSLGYVL 265
W RK +LF G + + YP + ++ + S+ + G +L
Sbjct: 289 WESFFVSVRKAITVLFFIGVRC------YEAYPNTSLPPSIL-EDSLENN--EGVPSPML 339
Query: 266 GVVKAYTTRVGGGPFPT--ELKNQTGDFLKEVGKEFGTVTNRQRRCGWLDLASV--RRSV 321
+ + N+T L +Q ++++ V +++
Sbjct: 340 SI------S--NLTQEQVQDYVNKTNSHLPA---------GKQ-----VEISLVNGAKNL 377
Query: 322 IING----VKGIALT--KLDVLDGLDELKICVGYRMDGREVD----FLPDDSIYHTRF-E 370
+++G + G+ LT K GLD+ +I R++ FLP S +H+
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI----PFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 371 PVY-MILE-------GWKQSTAGMRVF-----ADLPIQARNY--------IRKI------ 403
P +I + + + V+ +DL R + I
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGSISERIVDCIIRLPVK 489
Query: 404 -EEVLEVPVA-LLSIGP 418
E + +L GP
Sbjct: 490 WETTTQFKATHILDFGP 506
Score = 38.0 bits (88), Expect = 0.004
Identities = 49/283 (17%), Positives = 82/283 (28%), Gaps = 105/283 (37%)
Query: 97 NLRIANNASLILSIHRDLDMLREGALS-PCGAHIGTTQ------RGIGPAYEDRVGR--- 146
+ R L LS H L E L P + +Q + + E
Sbjct: 5 STR-----PLTLS-HGSL----EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 147 --------RAIR-VMDLTDVEHISKKIEQLLLHHNALRRSF-GEKEV------LY----- 185
+ + V L + + + + L L + ++ L
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 186 -----KTILEELMYAREKI-LPFMDVIWSLLERESRKG-AHI--LFEGAQGFLLDND--- 233
K +++ + AR PF S L R +G A + +F G QG + D
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-GGQG---NTDDYF 170
Query: 234 ------HGTY-PFVT-------------SSNTMSAQASIGSGI-----------SPGSLG 262
+ TY V T+ A+ G+ +P
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-D 229
Query: 263 YVL---------GVVK----AYTTRVGG---GPFPTELKNQTG 289
Y+L GV++ T ++ G G + LK TG
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Score = 29.1 bits (65), Expect = 1.9
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 33/107 (30%)
Query: 70 SSVVVDPHAFISEIESLAHQGICVTPNNLRI------------ANNASLILSIHRDLDML 117
S ++V I + L + +++I + S+ I +D +
Sbjct: 429 SHLLVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI---VDCI 483
Query: 118 R------EGALSPCGAHI------GTTQRGIGP-AYEDRVGRRAIRV 151
E HI G + G+G + ++ G +RV
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGAS--GLGVLTHRNKDG-TGVRV 527
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.10
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 9/26 (34%)
Query: 380 KQS----TAGMRVFAD-----LPIQA 396
KQ+ A ++++AD L I+A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
Score = 30.4 bits (67), Expect = 0.86
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 180 EKEVLYKTILE-EL-MYAREKILPFMDVIWSLLE 211
EK+ L K L+ L +YA + P + I + +E
Sbjct: 18 EKQALKK--LQASLKLYADDSA-PAL-AIKATME 47
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Length = 213
Score = 28.9 bits (65), Expect = 2.4
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 16 KGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVVRPDKMSIIGSSVVV 74
KI + + G++ T ++ I K + V + S I V +
Sbjct: 130 DMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTIKDHVFM 188
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein
structural and functional analyses; 2.30A {Pyrococcus
horikoshii OT3}
Length = 207
Score = 27.4 bits (61), Expect = 7.0
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 336 VLDGLDELKICVGY-RMDGREVDFLPDDSIYHTRFEPVYMILEGWKQSTAGM--RV-FAD 391
V D LD ++ G +V L + V +I G + + R+ +
Sbjct: 45 VDDILDTYYEFYTRLKVAGFDVAPLEN----------VQVIKMGGTKDIGRVIGRLNISK 94
Query: 392 LPIQARNYIRKIEEVLEVPVALLSIGPERENTLIMSNPFED 432
I + Y+ + ++ + PV +G + LI+ +
Sbjct: 95 YVISEQEYMEIVSQLKDYPVINPVLGLHK---LILLGNTFE 132
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
bundle, endocytosis/exocytosis complex; 2.40A {Loligo
pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Length = 591
Score = 27.3 bits (60), Expect = 7.6
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 67 IIGSSVVVDPHAFISEIESL 86
I+GS+ ++ P + ++ +
Sbjct: 569 ILGSTHILTPEGLLRDLRKI 588
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: e.25.1.1
Length = 671
Score = 27.0 bits (59), Expect = 9.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 67 IIGSSVVVDPHAFISEIESL 86
+ GS+ + P F++EI L
Sbjct: 642 MYGSTAITTPAEFLNEISRL 661
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.139 0.408
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,856,048
Number of extensions: 188106
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 23
Length of query: 432
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 337
Effective length of database: 3,390,050
Effective search space: 1142446850
Effective search space used: 1142446850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)