BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] (432 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 432 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/432 (100%), Positives = 432/432 (100%) Query: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV Sbjct: 1 MTNVVVVGLQWGDEGKGKIVDWLSENADVIVRFQGGNNAGHTLKVNDIVYKLSLLPSGVV 60 Query: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG Sbjct: 61 RPDKMSIIGSSVVVDPHAFISEIESLAHQGICVTPNNLRIANNASLILSIHRDLDMLREG 120 Query: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGE 180 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGE Sbjct: 121 ALSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSFGE 180 Query: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV Sbjct: 181 KEVLYKTILEELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFV 240 Query: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG Sbjct: 241 TSSNTMSAQASIGSGISPGSLGYVLGVVKAYTTRVGGGPFPTELKNQTGDFLKEVGKEFG 300 Query: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP 360 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP Sbjct: 301 TVTNRQRRCGWLDLASVRRSVIINGVKGIALTKLDVLDGLDELKICVGYRMDGREVDFLP 360 Query: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER Sbjct: 361 DDSIYHTRFEPVYMILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPER 420 Query: 421 ENTLIMSNPFED 432 ENTLIMSNPFED Sbjct: 421 ENTLIMSNPFED 432 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 27.3 bits (59), Expect = 0.45, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 374 MILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPE-----RENTLIMSN 428 +L+ W + VFAD + N + K+ + +P + IGPE E + S Sbjct: 154 FLLKNWDHNC--QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 Query: 429 PF 430 PF Sbjct: 212 PF 213 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 24.3 bits (51), Expect = 3.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 179 GEKEVLYKTILEELMYARE----KILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDH 234 G+ E+ ++ +++ RE I+ FMD I ++E ++ + E +Q L +ND Sbjct: 1077 GKLEISLDSVNQKIQKCREFFGDNIVAFMDEISKVMEISEKRISQRTQEISQQLLQNNDV 1136 Query: 235 GTYPFVTSSNTMSAQ 249 T + S++ + + Sbjct: 1137 ITNQIIDSTSRVRGE 1151 >gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178 L P G+ I T IG VG++A+ + + V+H KK L +H ++ SF Sbjct: 213 LPPSGSPILTDDIEIG-TLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASF 268 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.139 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,234 Number of Sequences: 1233 Number of extensions: 11992 Number of successful extensions: 31 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 6 length of query: 432 length of database: 328,796 effective HSP length: 77 effective length of query: 355 effective length of database: 233,855 effective search space: 83018525 effective search space used: 83018525 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)