HHsearch alignment for GI: 254780614 and conserved domain: CHL00063

>CHL00063 atpE ATP synthase CF1 epsilon subunit.
Probab=100.00  E-value=7.8e-33  Score=225.75  Aligned_cols=115  Identities=23%  Similarity=0.425  Sum_probs=107.3

Q ss_pred             EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC
Q ss_conf             02699984886375221319999605733577689800266706880799626884035422675699949969999811
Q gi|254780614|r    6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET   85 (135)
Q Consensus         6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~   85 (135)
T Consensus         2 t~~l~IvTP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~ev~~~~V~ILad~   80 (133)
T CHL00063          2 TLNLCVLTPNRIVWDSEVDEIILPTNSGQIGILPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVND   80 (133)
T ss_pred             EEEEEEECCCCEEEECEEEEEEEECCCCCHHHHHCCHHHHCCCCCCEEEEEE-CCEEEEEEECCCEEEEECCEEEEEEEE
T ss_conf             5899999599638804788999956851850121874242024585699998-991999998674999939989999705


Q ss_pred             CEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             220768599999999999999965078889999999
Q gi|254780614|r   86 ILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME  121 (135)
Q Consensus        86 a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~  121 (135)
T Consensus        81 ae~~~~ID~~rA~~a~~~Ae~~L~~~~~~~e~~~A~  116 (133)
T CHL00063         81 AEKGSDIDPQEAQQTLEIAEANLNKAEGKKQKIEAN  116 (133)
T ss_pred             EECHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             481555899999999999999986087737899999