HHsearch alignment for GI: 254780614 and conserved domain: CHL00063
>CHL00063 atpE ATP synthase CF1 epsilon subunit.
Probab=100.00 E-value=7.8e-33 Score=225.75 Aligned_cols=115 Identities=23% Similarity=0.425 Sum_probs=107.3
Q ss_pred EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC
Q ss_conf 02699984886375221319999605733577689800266706880799626884035422675699949969999811
Q gi|254780614|r 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET 85 (135)
Q Consensus 6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~ 85 (135)
T Consensus 2 t~~l~IvTP~~~~~~~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~ev~~~~V~ILad~ 80 (133)
T CHL00063 2 TLNLCVLTPNRIVWDSEVDEIILPTNSGQIGILPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVND 80 (133)
T ss_pred EEEEEEECCCCEEEECEEEEEEEECCCCCHHHHHCCHHHHCCCCCCEEEEEE-CCEEEEEEECCCEEEEECCEEEEEEEE
T ss_conf 5899999599638804788999956851850121874242024585699998-991999998674999939989999705
Q ss_pred CEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 220768599999999999999965078889999999
Q gi|254780614|r 86 ILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME 121 (135)
Q Consensus 86 a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~ 121 (135)
T Consensus 81 ae~~~~ID~~rA~~a~~~Ae~~L~~~~~~~e~~~A~ 116 (133)
T CHL00063 81 AEKGSDIDPQEAQQTLEIAEANLNKAEGKKQKIEAN 116 (133)
T ss_pred EECHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 481555899999999999999986087737899999