HHsearch alignment for GI: 254780614 and conserved domain: PRK13444

>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=100.00  E-value=2.5e-32  Score=222.57  Aligned_cols=110  Identities=25%  Similarity=0.444  Sum_probs=104.2

Q ss_pred             CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf             44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r    3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL   82 (135)
Q Consensus         3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il   82 (135)
T Consensus         2 Ma~~~~l~IVTP~~~~~~~~v~~V~~p~~~G~~GILp~H~Plit~L~~G~v~i~~~-~~~~~~~V~gGf~eV~~n~v~IL   80 (127)
T PRK13444          2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKG-EKLKRISVEGGFCEVKDNQISIL   80 (127)
T ss_pred             CCCCCEEEEECCCCEEEECEEEEEEEECCCCCCCCCCCCHHHHEEECCCEEEEEEC-CCEEEEEECCCEEEEECCEEEEE
T ss_conf             85662999998984288246589999778528300007612310313617999989-91899999560999979999999


Q ss_pred             EECCEEHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8112207685999999999999999650788
Q gi|254780614|r   83 SETILPMDNACLQALEKRIDEVCSDLNNICD  113 (135)
Q Consensus        83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~  113 (135)
T Consensus        81 ae~ae~~~dID~e~a~~a~~rAe~~l~~~~~  111 (127)
T PRK13444         81 TDHGALKEDIDHEHEKKLLAEAEKLPPSDSK  111 (127)
T ss_pred             EEEEEEHHHCCHHHHHHHHHHHHHHHHCCCH
T ss_conf             7055804348999999999999756646850