HHsearch alignment for GI: 254780614 and conserved domain: PRK13444
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional.
Probab=100.00 E-value=2.5e-32 Score=222.57 Aligned_cols=110 Identities=25% Similarity=0.444 Sum_probs=104.2
Q ss_pred CCCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEE
Q ss_conf 44402699984886375221319999605733577689800266706880799626884035422675699949969999
Q gi|254780614|r 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVL 82 (135)
Q Consensus 3 M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il 82 (135)
T Consensus 2 Ma~~~~l~IVTP~~~~~~~~v~~V~~p~~~G~~GILp~H~Plit~L~~G~v~i~~~-~~~~~~~V~gGf~eV~~n~v~IL 80 (127)
T PRK13444 2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKG-EKLKRISVEGGFCEVKDNQISIL 80 (127)
T ss_pred CCCCCEEEEECCCCEEEECEEEEEEEECCCCCCCCCCCCHHHHEEECCCEEEEEEC-CCEEEEEECCCEEEEECCEEEEE
T ss_conf 85662999998984288246589999778528300007612310313617999989-91899999560999979999999
Q ss_pred EECCEEHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8112207685999999999999999650788
Q gi|254780614|r 83 SETILPMDNACLQALEKRIDEVCSDLNNICD 113 (135)
Q Consensus 83 ~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~ 113 (135)
T Consensus 81 ae~ae~~~dID~e~a~~a~~rAe~~l~~~~~ 111 (127)
T PRK13444 81 TDHGALKEDIDHEHEKKLLAEAEKLPPSDSK 111 (127)
T ss_pred EEEEEEHHHCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 7055804348999999999999756646850