HHsearch alignment for GI: 254780614 and conserved domain: TIGR03166
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.89 E-value=7.5e-22 Score=157.14 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=95.0
Q ss_pred EEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf 69998488637522-13199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r 8 HFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI 86 (135)
Q Consensus 8 ~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a 86 (135)
T Consensus 1 kL~I~tP~~v~~~~~~V~~v~ae~~~G~fGILP~H~d~vt~L~pgil~~~~~~G~e~~~Av~~GiLv~~g~~V~V~~r~A 80 (122)
T TIGR03166 1 RLKILTPFRVFLDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVEVSVRNA 80 (122)
T ss_pred CCEEECCCEEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCEEEEEEECCCCEEEEEECCEEEEEECCEEEEEEEEE
T ss_conf 94997888578816886999997588625675798674756454799999789968999987729998699999998102
Q ss_pred EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 207685999999999999999650788899999999999999998
Q gi|254780614|r 87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLR 131 (135)
Q Consensus 87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r 131 (135)
T Consensus 81 v~g~--dL~~L~~~V~~~f~~~d---e~er~~R~~~~rLe~~~vR 120 (122)
T TIGR03166 81 VGGT--ELEELEEAVRQEFLTLD---EQERSARSAMARLESDFIR 120 (122)
T ss_pred ECCC--CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 1689--99999999999998676---8888888999998876764