HHsearch alignment for GI: 254780614 and conserved domain: TIGR03166

>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.89  E-value=7.5e-22  Score=157.14  Aligned_cols=119  Identities=17%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             EEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEECC
Q ss_conf             69998488637522-13199996057335776898002667068807996268840354226756999499699998112
Q gi|254780614|r    8 HFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETI   86 (135)
Q Consensus         8 ~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~a   86 (135)
T Consensus         1 kL~I~tP~~v~~~~~~V~~v~ae~~~G~fGILP~H~d~vt~L~pgil~~~~~~G~e~~~Av~~GiLv~~g~~V~V~~r~A   80 (122)
T TIGR03166         1 RLKILTPFRVFLDKLPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVEVSVRNA   80 (122)
T ss_pred             CCEEECCCEEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCEEEEEEECCCCEEEEEECCEEEEEECCEEEEEEEEE
T ss_conf             94997888578816886999997588625675798674756454799999789968999987729998699999998102


Q ss_pred             EEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             207685999999999999999650788899999999999999998
Q gi|254780614|r   87 LPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLR  131 (135)
Q Consensus        87 ~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~~~l~~~r  131 (135)
T Consensus        81 v~g~--dL~~L~~~V~~~f~~~d---e~er~~R~~~~rLe~~~vR  120 (122)
T TIGR03166        81 VGGT--ELEELEEAVRQEFLTLD---EQERSARSAMARLESDFIR  120 (122)
T ss_pred             ECCC--CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf             1689--99999999999998676---8888888999998876764