Query gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Match_columns 135 No_of_seqs 108 out of 1581 Neff 7.1 Searched_HMMs 33803 Date Wed Jun 1 15:51:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780614.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1aqt_A ATP synthase; hydrolas 100.0 9.2E-31 2.7E-35 212.4 18.2 121 4-124 1-121 (138) 2 >2e5y_A ATP synthase epsilon c 100.0 3.2E-30 9.5E-35 209.0 14.8 117 4-121 1-117 (133) 3 >2hld_H ATP synthase delta cha 100.0 4E-30 1.2E-34 208.4 9.7 115 2-116 5-120 (138) 4 >2qe7_H ATP synthase subunit e 100.0 2.9E-30 8.5E-35 209.3 1.5 110 4-114 1-110 (135) 5 >2rq6_A ATP synthase epsilon c 99.9 1.4E-23 4E-28 167.6 10.0 85 6-91 2-86 (86) 6 >2w6j_H F1-ATPase delta subuni 99.9 6.1E-25 1.8E-29 176.0 -0.7 89 2-90 33-123 (123) 7 >2ck3_H ATP synthase delta cha 99.9 3E-24 8.8E-29 171.7 -0.5 88 2-89 11-100 (100) 8 >3hqx_A UPF0345 protein aciad0 88.7 1.8 5.3E-05 23.2 7.3 82 1-83 4-99 (111) 9 >3eo6_A Protein of unknown fun 50.6 18 0.00053 16.9 7.7 69 8-77 10-89 (106) 10 >1vq8_E 50S ribosomal protein 41.2 25 0.00075 16.0 4.3 57 8-64 3-59 (79) 11 >1u8s_A Glycine cleavage syste 26.7 29 0.00087 15.6 1.4 17 1-17 1-17 (86) No 1 >>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} (A:) Probab=99.98 E-value=9.2e-31 Score=212.38 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=113.3 Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998 Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135) Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135) +++|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++++..++.+..|+|+|||++|.+|+|+|++ T Consensus 1 a~~l~l~IvtP~~~~~~~~v~~v~~~t~~G~~gILp~H~p~it~L~~G~i~i~~~~~~~~~~~v~gG~~~v~~~~v~I~~ 80 (138) T 1aqt_A 1 GSTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLA 80 (138) T ss_dssp -CCEEEEEEESSCEEEEEEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEE T ss_pred CCEEEEEEECCCCEEEECEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEEECCCCEEEEEEECCEEEECCCEEEEEH T ss_conf 96599999989855882457899997694375776898240231436579999859979999984889996699599992 Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 11220768599999999999999965078889999999999 Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 (135) Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~~~~ 124 (135) ++|++.++||.+++++.++++++.+++..+..++..++..+ T Consensus 81 ~~a~~~~~id~~~~~~~~~~a~~~l~~~~~~~~~~~~e~~l 121 (138) T 1aqt_A 81 DTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121 (138) T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHH T ss_pred HHEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 14075502999999999999999987087708999999999 No 2 >>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A (A:) Probab=99.97 E-value=3.2e-30 Score=209.01 Aligned_cols=117 Identities=17% Similarity=0.328 Sum_probs=108.1 Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998 Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135) Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135) |++|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|+||+++|+.+ +.++.|+|+|||++|.+|.|+|++ T Consensus 1 M~~l~l~IvtP~~~~~~~~v~~v~~~~~~G~~gILp~H~p~i~~L~~G~i~i~~~-~~~~~~~v~gG~~~v~~~~v~Il~ 79 (133) T 2e5y_A 1 MKTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKG-GKTQYIAVSGGFLEVRPDKVTILA 79 (133) T ss_dssp CCCEEEEEEETTEEEEEEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEETTEEEEEE T ss_pred CCEEEEEEECCCCEEEEEEEEEEEEECCCCCEEECCCCCCCEEECCCEEEEEEEC-CCEEEEEEECCEEEEECCEEEEEE T ss_conf 9758999996985388445889999669538154479824111214507999844-766999975640388558589998 Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 11220768599999999999999965078889999999 Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQME 121 (135) Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~~~~~~ 121 (135) +.|++.++||.+++++.++++++.+++..+..+.+.+. T Consensus 80 ~~a~~~~~id~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 117 (133) T 2e5y_A 80 QAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAE 117 (133) T ss_dssp SSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHH T ss_pred EEEEEHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 01888401899999999999999987086629999999 No 3 >>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H (H:) Probab=99.96 E-value=4e-30 Score=208.39 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=108.7 Q ss_pred CCCCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEE Q ss_conf 84440269998488637522-13199996057335776898002667068807996268840354226756999499699 Q gi|254780614|r 2 SLVNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCT 80 (135) Q Consensus 2 ~M~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~ 80 (135) +|+++|+|+|+||++.+|+| +|++|++||.+|+|||||||+|+|+.|+||+++|+.+++.+..|+++||++.+.++.|+ T Consensus 5 ~m~~~l~l~ivTP~~~~~~~~~V~~v~~~t~~G~~gILp~H~p~it~L~~G~i~i~~~~~~~~~~~~~gg~~~~~~~~v~ 84 (138) T 2hld_H 5 AASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLC 84 (138) T ss_dssp ------CEEEECSSCBCCC--CCSEEEEECSSSEEEECSSCCCCEEEECSSEEEEEETTEEEEEECCCEEEEECTTSCEE T ss_pred CCCCCEEEEEECCCCCEECCCCEEEEEEECCCCCEEECCCCCCEEEEEECCEEEEEECCCEEEEEECCCEEEEECCCEEE T ss_conf 66884699998696406778846999996685274575898350234107747984035515787406629993583799 Q ss_pred EEEECCEEHHHCCHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 998112207685999999999999999650788899 Q gi|254780614|r 81 VLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQ 116 (135) Q Consensus 81 Il~~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~~~ 116 (135) |+++.|++.++||.+++++.++++++++++..+.+. T Consensus 85 Il~~~a~~~~~id~~~a~~~~~~a~~~l~~~~~~~~ 120 (138) T 2hld_H 85 VTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREA 120 (138) T ss_dssp EEESCC-CHHHHC-CHHHHHHHGGGTTTTTC--CHH T ss_pred EEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 995130025455999999999999988706988899 No 4 >>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} (H:) Probab=99.96 E-value=2.9e-30 Score=209.31 Aligned_cols=110 Identities=23% Similarity=0.383 Sum_probs=103.3 Q ss_pred CCEEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEE Q ss_conf 44026999848863752213199996057335776898002667068807996268840354226756999499699998 Q gi|254780614|r 4 VNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLS 83 (135) Q Consensus 4 ~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~ 83 (135) |++|+|+|+||++.+|+++|++|++||.+|+|||||||+|+|+.|.||+++|+.+++ ++.|||+|||++|.+|.|+|++ T Consensus 1 M~~l~l~ivtP~~~~~~~~v~~v~~~~~~G~~gIlp~H~p~it~L~~G~i~i~~~~~-~~~~~v~gG~~~v~~~~v~Il~ 79 (135) T 2qe7_H 1 MATVQVDIVTPERKVFQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDK-ETLIAVSGGFLEVRPDKVNILA 79 (135) T ss_dssp CCCCEEEEBCSSCBCCCSCCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCTTSC-CBCCBCCSCCEEECSSEEEECC T ss_pred CCEEEEEEECCCCEEEECEEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEECCCC-EEEEEECCCEEEECCCEEEEEE T ss_conf 973799999798448824578999966943756658980427881378333221565-1567614786998599799997 Q ss_pred ECCEEHHHCCHHHHHHHHHHHHHHHHHCCCH Q ss_conf 1122076859999999999999996507888 Q gi|254780614|r 84 ETILPMDNACLQALEKRIDEVCSDLNNICDV 114 (135) Q Consensus 84 ~~a~~~~~iD~~~a~~~~e~a~~~l~~~~~~ 114 (135) +.|++.++||.+++++.++++++++++..+. T Consensus 80 ~~a~~~~~id~~~a~~~~~~a~~~l~~~~~~ 110 (135) T 2qe7_H 80 DTAELPEEIDVERAKKAKARHETILKRLDKT 110 (135) T ss_dssp SSCBCTTTSCHHHHHHHHHTTTTTTTTCCSS T ss_pred HHEEEHHHCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 3068840189999999999999998645624 No 5 >>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A (A:1-86) Probab=99.90 E-value=1.4e-23 Score=167.62 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=80.8 Q ss_pred EEEEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEEC Q ss_conf 02699984886375221319999605733577689800266706880799626884035422675699949969999811 Q gi|254780614|r 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSET 85 (135) Q Consensus 6 ~~~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~~~~v~Il~~~ 85 (135) +|+|+|+||++.+|+++|++|++|+.+|++||||||+|+++.|.||+++++. +++++.|+|+|||+++.+|+|+|+++. T Consensus 2 t~~l~IvtP~~~~~~~~v~~v~~~t~~G~~gIl~~H~p~i~~L~~g~~~i~~-~~~~~~~~v~gG~l~v~~n~v~Ila~~ 80 (86) T 2rq6_A 2 VMTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAIALMGGFAEVENNEVTILVNG 80 (86) T ss_dssp CEEEEEECSSSEEEEEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEES-SSCEEEEEECSEEEEECSSCEEEEESC T ss_pred EEEEEEECCCCEEEECEEEEEEEECCCCCEEECCCCCCEEEEEECCEEEEEE-CCCEEEEEEECCEEEEECCEEEEEEEE T ss_conf 7899999699558834468999987944726658981646773177899997-895899999578899979999999705 Q ss_pred CEEHHH Q ss_conf 220768 Q gi|254780614|r 86 ILPMDN 91 (135) Q Consensus 86 a~~~~~ 91 (135) |+++|+ T Consensus 81 a~~~en 86 (86) T 2rq6_A 81 AERGDT 86 (86) T ss_dssp EECSTT T ss_pred EEECCC T ss_conf 787111 No 6 >>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H (H:1-123) Probab=99.89 E-value=6.1e-25 Score=176.01 Aligned_cols=89 Identities=24% Similarity=0.492 Sum_probs=84.7 Q ss_pred CCCCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE-CCEE Q ss_conf 84440269998488637522-131999960573357768980026670688079962688403542267569994-9969 Q gi|254780614|r 2 SLVNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIV-PSHC 79 (135) Q Consensus 2 ~M~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~-~~~v 79 (135) .||++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++++.++++++.|+|+|||++|. +|+| T Consensus 33 ~m~~~l~L~IvTP~~~~~~g~~V~~V~~~t~~G~~gILpnH~p~it~L~~G~i~i~~~~~~~~~~~V~gG~l~V~~~n~v 112 (123) T 2w6j_H 33 AGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 112 (123) T ss_dssp ------CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC--------- T ss_pred CCCCEEEEEEECCCCCEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCEEECCCCEE T ss_conf 99874899997587405647856899997684474666898151467328826899379970332444782565279849 Q ss_pred EEEEECCEEHH Q ss_conf 99981122076 Q gi|254780614|r 80 TVLSETILPMD 90 (135) Q Consensus 80 ~Il~~~a~~~~ 90 (135) +|++++|+++| T Consensus 113 ~Ila~~a~~~E 123 (123) T 2w6j_H 113 QLLAEEAVTLD 123 (123) T ss_dssp CEEBSSBCCSS T ss_pred EEEEEEEEEHH T ss_conf 99871026643 No 7 >>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (H:1-100) Probab=99.88 E-value=3e-24 Score=171.74 Aligned_cols=88 Identities=23% Similarity=0.480 Sum_probs=82.8 Q ss_pred CCCCEEEEEEECCCCEEECC-EEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE-CCEE Q ss_conf 84440269998488637522-131999960573357768980026670688079962688403542267569994-9969 Q gi|254780614|r 2 SLVNDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIV-PSHC 79 (135) Q Consensus 2 ~M~~~~~l~ivtP~~~i~~~-~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~~~V~gG~~~v~-~~~v 79 (135) .||++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+.+|++++.|+|+|||++|. +|.| T Consensus 11 ~m~~~~~l~IvtP~~~~~~~~~v~~v~~~~~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~v~gG~~~v~~~n~v 90 (100) T 2ck3_H 11 AGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 90 (100) T ss_dssp ------CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC--------- T ss_pred CCCCEEEEEEECCCCEEECCCCEEEEEEECCCCCEEECCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCEEECCCCEE T ss_conf 99986899998698005678857999986685365676898252576128868999379970333543782576379969 Q ss_pred EEEEECCEEH Q ss_conf 9998112207 Q gi|254780614|r 80 TVLSETILPM 89 (135) Q Consensus 80 ~Il~~~a~~~ 89 (135) +|++++|++. T Consensus 91 ~Il~~~a~~i 100 (100) T 2ck3_H 91 QLLAEEAVTL 100 (100) T ss_dssp CEEBSSBCCS T ss_pred EEEEEEEEEH T ss_conf 9987213763 No 8 >>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} (A:) Probab=88.75 E-value=1.8 Score=23.15 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=62.5 Q ss_pred CCCCCEEEEEEECCCCEEECCEEEEEEEEECCCE---EEE-CCC--------CCEEEEECCCCEEEEEECCC-CEEEEEC Q ss_conf 9844402699984886375221319999605733---577-689--------80026670688079962688-4035422 Q gi|254780614|r 1 MSLVNDLHFELVSPEKCVFSGEVQSVVLPSELGD---ITV-LVG--------HAPVLTTIKSGIVTISLSCE-EIHRYVV 67 (135) Q Consensus 1 m~M~~~~~l~ivtP~~~i~~~~v~~v~~p~~~G~---~gI-Lp~--------H~p~i~~L~~G~i~i~~~~~-~~~~~~V 67 (135) |+|+.-=.+.|+.--.+.|+|.|.+..+-..||. +|| +|+ ++|=+..+..|.+.++.++. +|+ -+- T Consensus 4 ~~m~~f~nVsv~kkaNvYFDGkv~S~~~~~~dG~~kTlGVm~pGe~~Y~F~T~~~E~MevvsG~l~VkLpg~~ew~-~~~ 82 (111) T 3hqx_A 4 XSSAQFDHVTVIKKSNVYFGGLCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERXEIISGECRVKIADSTESE-LFR 82 (111) T ss_dssp --CCCCCSCEECSSCEEETTTTEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCE-EEE T ss_pred CCHHHCCCEEEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCE-EEC T ss_conf 5874647789999947789887899999918999888999915751278759996899999618999989986557-957 Q ss_pred CCCEEEEECC-EEEEEE Q ss_conf 6756999499-699998 Q gi|254780614|r 68 IGGICDIVPS-HCTVLS 83 (135) Q Consensus 68 ~gG~~~v~~~-~v~Il~ 83 (135) .|-..+|-.| +-.|-+ T Consensus 83 aGesF~VpanssF~i~v 99 (111) T 3hqx_A 83 AGQSFYVPGNSLFKIET 99 (111) T ss_dssp TTCEEEECTTCEEEEEC T ss_pred CCCEEEECCCCEEEEEE T ss_conf 99758968999899998 No 9 >>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270} (A:) Probab=50.59 E-value=18 Score=16.91 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=53.7 Q ss_pred EEEEECCCCEEECCEEEEEEEEECCCE---EEEC-CC------CCEEEEECCCCEEEEEECCCC-EEEEECCCCEEEEEC Q ss_conf 699984886375221319999605733---5776-89------800266706880799626884-035422675699949 Q gi|254780614|r 8 HFELVSPEKCVFSGEVQSVVLPSELGD---ITVL-VG------HAPVLTTIKSGIVTISLSCEE-IHRYVVIGGICDIVP 76 (135) Q Consensus 8 ~l~ivtP~~~i~~~~v~~v~~p~~~G~---~gIL-p~------H~p~i~~L~~G~i~i~~~~~~-~~~~~V~gG~~~v~~ 76 (135) .+.++.--.+.|+|.|.+..+-..+|. +||+ || ++|=+..+..|.+.++.++.. |+ -+-.|-..+|-. T Consensus 10 nVtv~kkaNvYFdGkV~S~~~~~~dG~~kTlGVm~pGeY~F~T~~~E~MevvsG~l~V~Lpg~~ew~-~~~aG~sF~Vpa 88 (106) T 3eo6_A 10 ATALGKSSRISLDGRRSERSVILADGSXHSLTLLHPGVYTLSSEVAETIRVLSGXAYYHAEGANDVQ-ELHAGDSXVIPA 88 (106) T ss_dssp EEEEESCCEEETTTTEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCE-EEETTCEEEECS T ss_pred CEEEEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCEEEECCCCCEEEEEEEEEEEEECCCCCCCE-EECCCCEEEECC T ss_conf 5078678779999858999999089986689999620688759994899998518999989985427-946998799789 Q ss_pred C Q ss_conf 9 Q gi|254780614|r 77 S 77 (135) Q Consensus 77 ~ 77 (135) | T Consensus 89 n 89 (106) T 3eo6_A 89 N 89 (106) T ss_dssp S T ss_pred C T ss_conf 9 No 10 >>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:1-79) Probab=41.16 E-value=25 Score=16.00 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=47.1 Q ss_pred EEEEECCCCEEECCEEEEEEEEECCCEEEECCCCCEEEEECCCCEEEEEECCCCEEE Q ss_conf 699984886375221319999605733577689800266706880799626884035 Q gi|254780614|r 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 (135) Q Consensus 8 ~l~ivtP~~~i~~~~v~~v~~p~~~G~~gILp~H~p~i~~L~~G~i~i~~~~~~~~~ 64 (135) +..|--|+++=.+-+-..|++.|..|++..-=.|.+.-..+..+.+.+...++..+. T Consensus 3 ripI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~v~i~~~~~~i~v~~~~~~k~~ 59 (79) T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKT 59 (79) T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHH T ss_pred CCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCCHH T ss_conf 665618999789997999999848989999914885799983988998427664236 No 11 >>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} (A:1-86) Probab=26.65 E-value=29 Score=15.59 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=12.4 Q ss_pred CCCCCEEEEEEECCCCE Q ss_conf 98444026999848863 Q gi|254780614|r 1 MSLVNDLHFELVSPEKC 17 (135) Q Consensus 1 m~M~~~~~l~ivtP~~~ 17 (135) |+|.+++-++++.|++. T Consensus 1 Ms~~~~~vitv~g~Drp 17 (86) T 1u8s_A 1 MSLTQHLVITAVGTDRP 17 (86) T ss_dssp -CCCEEEEEEEEEECCT T ss_pred CCCCEEEEEEEEECCCC T ss_conf 99741899999926988 Done!